Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03810 and HGI48_RS03815 are separated by 36 nucleotides HGI48_RS03815 and HGI48_RS03820 are separated by 277 nucleotides HGI48_RS03820 and HGI48_RS03825 are separated by 363 nucleotides HGI48_RS03825 and HGI48_RS03830 are separated by 255 nucleotides
HGI48_RS03810: HGI48_RS03810 - molybdopterin-dependent oxidoreductase, at 812,436 to 815,018
_RS03810
HGI48_RS03815: HGI48_RS03815 - molecular chaperone TorD family protein, at 815,055 to 815,714
_RS03815
HGI48_RS03820: HGI48_RS03820 - helix-turn-helix domain-containing protein, at 815,992 to 816,786
_RS03820
HGI48_RS03825: HGI48_RS03825 - IS630 family transposase, at 817,150 to 817,296
_RS03825
HGI48_RS03830: HGI48_RS03830 - HlyD family efflux transporter periplasmic adaptor subunit, at 817,552 to 818,694
_RS03830
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1 at 815.067 kb on + strand at 815.406 kb on + strand at 815.698 kb on - strand at 815.708 kb on - strand at 815.887 kb on + strand at 815.888 kb on - strand at 815.909 kb on + strand at 815.917 kb on - strand at 815.917 kb on - strand at 816.263 kb on - strand, within HGI48_RS03820 at 816.353 kb on - strand, within HGI48_RS03820 at 816.353 kb on - strand, within HGI48_RS03820 at 816.569 kb on + strand, within HGI48_RS03820 at 816.613 kb on + strand, within HGI48_RS03820 at 816.949 kb on - strand at 816.975 kb on + strand at 816.977 kb on + strand at 817.034 kb on - strand at 817.069 kb on - strand at 817.136 kb on + strand at 817.263 kb on + strand, within HGI48_RS03825 at 817.309 kb on - strand at 817.346 kb on + strand at 817.347 kb on - strand at 817.370 kb on - strand at 817.370 kb on - strand at 817.384 kb on + strand at 817.654 kb on + strand at 817.655 kb on - strand at 817.658 kb on + strand at 817.658 kb on + strand at 817.768 kb on + strand, within HGI48_RS03830 at 817.768 kb on + strand, within HGI48_RS03830
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 815,067 + -1.0 815,406 + -0.5 815,698 - -0.5 815,708 - +1.1 815,887 + +1.1 815,888 - +0.1 815,909 + -0.2 815,917 - +0.4 815,917 - -1.2 816,263 - HGI48_RS03820 0.34 -1.2 816,353 - HGI48_RS03820 0.45 -0.1 816,353 - HGI48_RS03820 0.45 -1.8 816,569 + HGI48_RS03820 0.73 +0.7 816,613 + HGI48_RS03820 0.78 -1.5 816,949 - -0.3 816,975 + -0.5 816,977 + -0.2 817,034 - -0.1 817,069 - -0.5 817,136 + -0.9 817,263 + HGI48_RS03825 0.77 -0.2 817,309 - +1.1 817,346 + +0.5 817,347 - +0.1 817,370 - -0.9 817,370 - -0.2 817,384 + -0.2 817,654 + +1.1 817,655 - -0.2 817,658 + -1.2 817,658 + +0.2 817,768 + HGI48_RS03830 0.19 -1.5 817,768 + HGI48_RS03830 0.19 +0.9
Or see this region's nucleotide sequence