Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03775 and HGI48_RS03780 are separated by 383 nucleotides HGI48_RS03780 and HGI48_RS03785 are separated by 268 nucleotides
HGI48_RS03775: HGI48_RS03775 - 5-deoxy-glucuronate isomerase, at 805,238 to 806,065
_RS03775
HGI48_RS03780: HGI48_RS03780 - lytic murein transglycosylase B, at 806,449 to 807,552
_RS03780
HGI48_RS03785: HGI48_RS03785 - nucleoside recognition family protein, at 807,821 to 808,753
_RS03785
Position (kb) 806
807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 805.453 kb on + strand, within HGI48_RS03775 at 805.465 kb on + strand, within HGI48_RS03775 at 805.465 kb on + strand, within HGI48_RS03775 at 805.465 kb on + strand, within HGI48_RS03775 at 805.465 kb on + strand, within HGI48_RS03775 at 805.466 kb on - strand, within HGI48_RS03775 at 805.466 kb on - strand, within HGI48_RS03775 at 805.466 kb on - strand at 805.502 kb on + strand, within HGI48_RS03775 at 805.502 kb on + strand, within HGI48_RS03775 at 805.646 kb on - strand, within HGI48_RS03775 at 805.663 kb on + strand, within HGI48_RS03775 at 805.664 kb on - strand, within HGI48_RS03775 at 805.664 kb on - strand, within HGI48_RS03775 at 805.715 kb on + strand, within HGI48_RS03775 at 805.715 kb on + strand, within HGI48_RS03775 at 805.716 kb on - strand, within HGI48_RS03775 at 805.716 kb on - strand, within HGI48_RS03775 at 805.716 kb on - strand, within HGI48_RS03775 at 805.732 kb on + strand, within HGI48_RS03775 at 805.732 kb on + strand at 805.802 kb on + strand, within HGI48_RS03775 at 805.802 kb on + strand, within HGI48_RS03775 at 805.803 kb on - strand, within HGI48_RS03775 at 805.803 kb on - strand, within HGI48_RS03775 at 805.803 kb on - strand, within HGI48_RS03775 at 805.803 kb on - strand, within HGI48_RS03775 at 805.805 kb on + strand, within HGI48_RS03775 at 805.805 kb on + strand, within HGI48_RS03775 at 805.806 kb on - strand, within HGI48_RS03775 at 805.806 kb on - strand, within HGI48_RS03775 at 805.850 kb on + strand at 805.851 kb on - strand, within HGI48_RS03775 at 805.889 kb on + strand, within HGI48_RS03775 at 805.889 kb on + strand, within HGI48_RS03775 at 805.890 kb on - strand, within HGI48_RS03775 at 805.950 kb on - strand, within HGI48_RS03775 at 805.958 kb on + strand, within HGI48_RS03775 at 805.958 kb on + strand, within HGI48_RS03775 at 805.958 kb on + strand, within HGI48_RS03775 at 805.958 kb on + strand, within HGI48_RS03775 at 805.959 kb on - strand, within HGI48_RS03775 at 805.959 kb on - strand, within HGI48_RS03775 at 805.959 kb on - strand, within HGI48_RS03775 at 805.959 kb on - strand, within HGI48_RS03775 at 805.961 kb on + strand, within HGI48_RS03775 at 805.961 kb on + strand, within HGI48_RS03775 at 805.961 kb on + strand, within HGI48_RS03775 at 805.961 kb on + strand, within HGI48_RS03775 at 805.961 kb on + strand, within HGI48_RS03775 at 805.962 kb on - strand, within HGI48_RS03775 at 805.962 kb on - strand at 805.962 kb on - strand at 805.962 kb on - strand, within HGI48_RS03775 at 805.962 kb on - strand, within HGI48_RS03775 at 805.966 kb on + strand, within HGI48_RS03775 at 806.002 kb on + strand at 806.112 kb on + strand at 806.113 kb on - strand at 806.113 kb on - strand at 806.113 kb on - strand at 806.113 kb on - strand at 806.113 kb on - strand at 806.145 kb on + strand at 806.145 kb on + strand at 806.145 kb on + strand at 806.146 kb on - strand at 806.172 kb on + strand at 806.172 kb on + strand at 806.172 kb on + strand at 806.173 kb on - strand at 806.173 kb on - strand at 806.250 kb on + strand at 806.415 kb on + strand at 806.416 kb on - strand at 806.419 kb on + strand at 806.419 kb on + strand at 806.419 kb on + strand at 806.420 kb on - strand at 806.450 kb on + strand at 806.450 kb on + strand at 806.451 kb on - strand at 806.451 kb on - strand at 806.512 kb on + strand at 806.513 kb on - strand at 806.513 kb on - strand at 806.513 kb on - strand at 806.513 kb on - strand at 806.513 kb on - strand at 806.513 kb on - strand at 806.513 kb on - strand at 806.513 kb on - strand at 806.513 kb on - strand at 806.526 kb on - strand at 806.540 kb on + strand at 806.541 kb on - strand at 806.570 kb on + strand, within HGI48_RS03780 at 806.571 kb on - strand, within HGI48_RS03780 at 806.571 kb on - strand, within HGI48_RS03780 at 806.573 kb on + strand at 806.574 kb on - strand, within HGI48_RS03780 at 806.574 kb on - strand, within HGI48_RS03780 at 806.669 kb on + strand at 806.762 kb on + strand at 806.763 kb on - strand, within HGI48_RS03780 at 806.763 kb on - strand, within HGI48_RS03780 at 806.837 kb on + strand at 806.837 kb on + strand, within HGI48_RS03780 at 806.838 kb on - strand, within HGI48_RS03780 at 806.870 kb on + strand, within HGI48_RS03780 at 806.871 kb on - strand, within HGI48_RS03780 at 806.945 kb on + strand, within HGI48_RS03780 at 806.945 kb on + strand, within HGI48_RS03780 at 806.966 kb on + strand, within HGI48_RS03780 at 807.128 kb on + strand, within HGI48_RS03780 at 807.329 kb on + strand, within HGI48_RS03780 at 807.330 kb on - strand, within HGI48_RS03780 at 807.495 kb on + strand at 807.501 kb on + strand at 807.501 kb on + strand at 807.502 kb on - strand at 807.502 kb on - strand at 807.563 kb on + strand at 807.563 kb on + strand at 807.563 kb on + strand at 807.564 kb on - strand at 807.565 kb on + strand at 807.565 kb on + strand at 807.565 kb on + strand at 807.566 kb on - strand at 807.566 kb on - strand at 807.566 kb on - strand at 807.597 kb on + strand at 807.688 kb on + strand at 807.688 kb on + strand at 807.689 kb on - strand at 807.689 kb on - strand at 807.689 kb on - strand at 807.689 kb on - strand at 807.697 kb on + strand at 807.697 kb on + strand at 807.732 kb on + strand at 807.769 kb on - strand at 807.769 kb on - strand at 807.818 kb on + strand at 807.818 kb on + strand at 807.818 kb on + strand at 807.818 kb on + strand at 807.819 kb on - strand at 807.819 kb on - strand at 807.819 kb on - strand at 807.819 kb on - strand at 807.819 kb on - strand at 807.819 kb on - strand at 807.819 kb on - strand at 807.819 kb on - strand at 807.819 kb on - strand at 807.878 kb on + strand at 807.878 kb on + strand at 807.878 kb on + strand at 807.879 kb on - strand at 807.879 kb on - strand at 807.879 kb on - strand at 807.879 kb on - strand at 807.879 kb on - strand at 807.880 kb on + strand at 807.880 kb on + strand at 807.880 kb on + strand at 807.881 kb on - strand at 807.881 kb on - strand at 807.881 kb on - strand at 807.881 kb on - strand at 807.881 kb on - strand at 807.881 kb on - strand at 807.896 kb on - strand at 808.146 kb on + strand, within HGI48_RS03785 at 808.146 kb on + strand, within HGI48_RS03785 at 808.146 kb on + strand, within HGI48_RS03785 at 808.146 kb on + strand, within HGI48_RS03785 at 808.146 kb on + strand, within HGI48_RS03785 at 808.146 kb on + strand, within HGI48_RS03785 at 808.146 kb on + strand, within HGI48_RS03785 at 808.147 kb on - strand, within HGI48_RS03785 at 808.147 kb on - strand, within HGI48_RS03785 at 808.151 kb on + strand, within HGI48_RS03785 at 808.196 kb on - strand, within HGI48_RS03785 at 808.235 kb on + strand, within HGI48_RS03785 at 808.235 kb on + strand, within HGI48_RS03785 at 808.235 kb on + strand, within HGI48_RS03785 at 808.235 kb on + strand, within HGI48_RS03785 at 808.235 kb on + strand, within HGI48_RS03785 at 808.235 kb on + strand, within HGI48_RS03785 at 808.236 kb on - strand, within HGI48_RS03785 at 808.236 kb on - strand, within HGI48_RS03785 at 808.236 kb on - strand, within HGI48_RS03785 at 808.236 kb on - strand, within HGI48_RS03785 at 808.236 kb on - strand, within HGI48_RS03785 at 808.253 kb on - strand, within HGI48_RS03785 at 808.257 kb on + strand, within HGI48_RS03785 at 808.333 kb on + strand, within HGI48_RS03785 at 808.334 kb on - strand, within HGI48_RS03785 at 808.334 kb on - strand, within HGI48_RS03785 at 808.337 kb on - strand, within HGI48_RS03785 at 808.337 kb on - strand at 808.396 kb on + strand, within HGI48_RS03785 at 808.396 kb on + strand, within HGI48_RS03785 at 808.396 kb on + strand, within HGI48_RS03785
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 805,453 + HGI48_RS03775 0.26 -0.4 805,465 + HGI48_RS03775 0.27 +0.2 805,465 + HGI48_RS03775 0.27 -0.2 805,465 + HGI48_RS03775 0.27 -2.2 805,465 + HGI48_RS03775 0.27 -2.1 805,466 - HGI48_RS03775 0.28 -0.5 805,466 - HGI48_RS03775 0.28 +0.1 805,466 - -0.5 805,502 + HGI48_RS03775 0.32 -0.7 805,502 + HGI48_RS03775 0.32 +0.1 805,646 - HGI48_RS03775 0.49 -1.5 805,663 + HGI48_RS03775 0.51 -1.2 805,664 - HGI48_RS03775 0.51 -0.9 805,664 - HGI48_RS03775 0.51 -1.7 805,715 + HGI48_RS03775 0.58 -2.5 805,715 + HGI48_RS03775 0.58 -0.3 805,716 - HGI48_RS03775 0.58 +0.1 805,716 - HGI48_RS03775 0.58 +0.4 805,716 - HGI48_RS03775 0.58 +1.1 805,732 + HGI48_RS03775 0.60 -0.7 805,732 + +2.1 805,802 + HGI48_RS03775 0.68 -1.2 805,802 + HGI48_RS03775 0.68 -0.2 805,803 - HGI48_RS03775 0.68 -0.2 805,803 - HGI48_RS03775 0.68 -2.1 805,803 - HGI48_RS03775 0.68 -0.9 805,803 - HGI48_RS03775 0.68 -0.0 805,805 + HGI48_RS03775 0.68 +0.4 805,805 + HGI48_RS03775 0.68 +2.2 805,806 - HGI48_RS03775 0.69 -0.8 805,806 - HGI48_RS03775 0.69 -0.3 805,850 + -0.5 805,851 - HGI48_RS03775 0.74 +0.8 805,889 + HGI48_RS03775 0.79 +0.1 805,889 + HGI48_RS03775 0.79 +1.3 805,890 - HGI48_RS03775 0.79 +1.4 805,950 - HGI48_RS03775 0.86 -1.9 805,958 + HGI48_RS03775 0.87 -0.7 805,958 + HGI48_RS03775 0.87 +0.3 805,958 + HGI48_RS03775 0.87 -0.3 805,958 + HGI48_RS03775 0.87 -0.1 805,959 - HGI48_RS03775 0.87 -0.6 805,959 - HGI48_RS03775 0.87 -0.6 805,959 - HGI48_RS03775 0.87 -1.0 805,959 - HGI48_RS03775 0.87 -1.2 805,961 + HGI48_RS03775 0.87 -0.2 805,961 + HGI48_RS03775 0.87 -0.1 805,961 + HGI48_RS03775 0.87 -0.9 805,961 + HGI48_RS03775 0.87 -0.8 805,961 + HGI48_RS03775 0.87 -0.4 805,962 - HGI48_RS03775 0.87 -0.8 805,962 - +0.5 805,962 - +0.5 805,962 - HGI48_RS03775 0.87 -0.5 805,962 - HGI48_RS03775 0.87 -2.5 805,966 + HGI48_RS03775 0.88 +0.1 806,002 + +1.1 806,112 + -3.0 806,113 - -0.9 806,113 - -1.0 806,113 - -0.6 806,113 - -3.3 806,113 - -0.9 806,145 + -0.5 806,145 + -0.4 806,145 + -0.2 806,146 - +0.4 806,172 + +0.1 806,172 + -0.2 806,172 + -0.1 806,173 - +1.7 806,173 - -0.1 806,250 + -0.2 806,415 + +2.1 806,416 - -0.1 806,419 + -0.8 806,419 + -1.7 806,419 + -0.7 806,420 - +0.3 806,450 + -2.2 806,450 + -0.1 806,451 - +3.9 806,451 - -1.3 806,512 + +0.4 806,513 - +0.1 806,513 - +2.1 806,513 - -0.9 806,513 - -2.1 806,513 - -0.2 806,513 - +0.8 806,513 - -0.5 806,513 - +0.6 806,513 - +0.7 806,526 - -0.6 806,540 + -0.7 806,541 - +0.5 806,570 + HGI48_RS03780 0.11 +0.1 806,571 - HGI48_RS03780 0.11 +0.1 806,571 - HGI48_RS03780 0.11 -0.2 806,573 + +0.5 806,574 - HGI48_RS03780 0.11 +2.1 806,574 - HGI48_RS03780 0.11 -2.2 806,669 + +0.1 806,762 + +1.7 806,763 - HGI48_RS03780 0.28 -1.0 806,763 - HGI48_RS03780 0.28 +0.3 806,837 + +1.1 806,837 + HGI48_RS03780 0.35 +0.1 806,838 - HGI48_RS03780 0.35 -0.1 806,870 + HGI48_RS03780 0.38 -0.2 806,871 - HGI48_RS03780 0.38 -0.3 806,945 + HGI48_RS03780 0.45 +0.7 806,945 + HGI48_RS03780 0.45 +0.4 806,966 + HGI48_RS03780 0.47 -0.9 807,128 + HGI48_RS03780 0.62 +0.1 807,329 + HGI48_RS03780 0.80 -2.6 807,330 - HGI48_RS03780 0.80 +0.1 807,495 + -0.5 807,501 + -1.2 807,501 + -0.8 807,502 - -1.9 807,502 - -0.9 807,563 + +0.8 807,563 + +0.9 807,563 + -0.3 807,564 - +0.8 807,565 + +0.0 807,565 + +0.1 807,565 + +0.3 807,566 - -1.9 807,566 - +0.3 807,566 - -0.4 807,597 + +1.5 807,688 + -0.5 807,688 + +1.1 807,689 - +1.1 807,689 - -2.5 807,689 - -1.5 807,689 - -0.9 807,697 + -0.8 807,697 + -0.5 807,732 + +0.1 807,769 - -0.9 807,769 - -0.7 807,818 + -1.1 807,818 + -0.6 807,818 + +0.4 807,818 + +0.6 807,819 - -0.7 807,819 - -0.7 807,819 - -0.5 807,819 - +0.5 807,819 - +0.7 807,819 - -2.1 807,819 - -1.3 807,819 - -1.7 807,819 - -1.7 807,878 + -1.6 807,878 + -0.5 807,878 + +1.4 807,879 - -0.3 807,879 - -1.2 807,879 - +0.4 807,879 - +2.4 807,879 - +0.1 807,880 + -1.7 807,880 + -0.6 807,880 + -0.5 807,881 - +1.4 807,881 - +0.3 807,881 - +0.1 807,881 - -0.5 807,881 - +0.1 807,881 - -1.0 807,896 - +0.4 808,146 + HGI48_RS03785 0.35 -1.2 808,146 + HGI48_RS03785 0.35 -2.2 808,146 + HGI48_RS03785 0.35 -0.8 808,146 + HGI48_RS03785 0.35 +0.7 808,146 + HGI48_RS03785 0.35 -2.4 808,146 + HGI48_RS03785 0.35 -1.7 808,146 + HGI48_RS03785 0.35 -1.5 808,147 - HGI48_RS03785 0.35 +0.8 808,147 - HGI48_RS03785 0.35 -1.5 808,151 + HGI48_RS03785 0.35 -1.5 808,196 - HGI48_RS03785 0.40 -2.2 808,235 + HGI48_RS03785 0.44 -1.5 808,235 + HGI48_RS03785 0.44 -2.1 808,235 + HGI48_RS03785 0.44 -0.7 808,235 + HGI48_RS03785 0.44 -0.9 808,235 + HGI48_RS03785 0.44 -1.6 808,235 + HGI48_RS03785 0.44 -0.1 808,236 - HGI48_RS03785 0.44 +0.1 808,236 - HGI48_RS03785 0.44 -0.4 808,236 - HGI48_RS03785 0.44 +0.1 808,236 - HGI48_RS03785 0.44 -0.6 808,236 - HGI48_RS03785 0.44 -0.3 808,253 - HGI48_RS03785 0.46 +0.3 808,257 + HGI48_RS03785 0.47 +0.7 808,333 + HGI48_RS03785 0.55 +0.4 808,334 - HGI48_RS03785 0.55 -0.7 808,334 - HGI48_RS03785 0.55 -0.5 808,337 - HGI48_RS03785 0.55 -0.1 808,337 - +0.5 808,396 + HGI48_RS03785 0.62 +0.1 808,396 + HGI48_RS03785 0.62 -0.8 808,396 + HGI48_RS03785 0.62 -1.1
Or see this region's nucleotide sequence