Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01890 and HGI48_RS01895 are separated by 113 nucleotides HGI48_RS01895 and HGI48_RS01900 are separated by 16 nucleotides HGI48_RS01900 and HGI48_RS01905 are separated by 411 nucleotides
HGI48_RS01890: HGI48_RS01890 - 2-iminobutanoate/2-iminopropanoate deaminase, at 419,386 to 419,772
_RS01890
HGI48_RS01895: HGI48_RS01895 - aspartate carbamoyltransferase regulatory subunit, at 419,886 to 420,350
_RS01895
HGI48_RS01900: HGI48_RS01900 - aspartate carbamoyltransferase, at 420,367 to 421,302
_RS01900
HGI48_RS01905: HGI48_RS01905 - YhcH/YjgK/YiaL family protein, at 421,714 to 422,181
_RS01905
Position (kb) 420
421
422 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 419.502 kb on - strand at 419.723 kb on + strand, within HGI48_RS01890 at 419.723 kb on + strand, within HGI48_RS01890 at 419.724 kb on - strand, within HGI48_RS01890 at 419.786 kb on + strand at 419.786 kb on + strand at 419.787 kb on - strand at 419.787 kb on - strand at 419.787 kb on - strand at 419.787 kb on - strand at 419.852 kb on - strand at 419.932 kb on + strand at 419.933 kb on - strand, within HGI48_RS01895 at 419.933 kb on - strand, within HGI48_RS01895 at 420.085 kb on + strand, within HGI48_RS01895 at 420.086 kb on - strand, within HGI48_RS01895 at 420.121 kb on + strand, within HGI48_RS01895 at 420.121 kb on + strand, within HGI48_RS01895 at 420.121 kb on + strand, within HGI48_RS01895 at 420.121 kb on + strand at 420.122 kb on - strand, within HGI48_RS01895 at 420.122 kb on - strand, within HGI48_RS01895 at 420.265 kb on - strand, within HGI48_RS01895 at 420.324 kb on + strand at 420.324 kb on + strand at 420.325 kb on - strand at 420.325 kb on - strand at 420.325 kb on - strand at 420.325 kb on - strand at 420.325 kb on - strand at 420.331 kb on - strand at 420.335 kb on + strand at 420.335 kb on + strand at 420.355 kb on + strand at 420.355 kb on + strand at 420.355 kb on + strand at 420.355 kb on + strand at 420.355 kb on + strand at 420.355 kb on + strand at 420.355 kb on + strand at 420.355 kb on + strand at 420.355 kb on + strand at 420.356 kb on - strand at 420.356 kb on - strand at 420.356 kb on - strand at 420.356 kb on - strand at 420.356 kb on - strand at 420.356 kb on - strand at 420.356 kb on - strand at 420.356 kb on - strand at 420.356 kb on - strand at 420.363 kb on + strand at 420.363 kb on + strand at 420.419 kb on + strand at 420.423 kb on + strand at 420.423 kb on + strand at 420.424 kb on - strand at 420.424 kb on - strand at 420.424 kb on - strand at 420.424 kb on - strand at 420.424 kb on - strand at 420.446 kb on + strand at 420.446 kb on + strand at 420.447 kb on - strand at 420.447 kb on - strand at 420.447 kb on - strand at 420.447 kb on - strand at 420.447 kb on - strand at 420.449 kb on + strand at 420.559 kb on - strand, within HGI48_RS01900 at 420.581 kb on + strand, within HGI48_RS01900 at 420.581 kb on + strand at 420.581 kb on + strand, within HGI48_RS01900 at 420.582 kb on - strand, within HGI48_RS01900 at 420.623 kb on + strand, within HGI48_RS01900 at 420.623 kb on + strand, within HGI48_RS01900 at 420.623 kb on + strand, within HGI48_RS01900 at 420.623 kb on + strand, within HGI48_RS01900 at 420.623 kb on + strand, within HGI48_RS01900 at 420.624 kb on - strand, within HGI48_RS01900 at 420.624 kb on - strand, within HGI48_RS01900 at 420.624 kb on - strand, within HGI48_RS01900 at 420.624 kb on - strand, within HGI48_RS01900 at 420.674 kb on + strand, within HGI48_RS01900 at 420.675 kb on - strand, within HGI48_RS01900 at 420.710 kb on + strand, within HGI48_RS01900 at 420.710 kb on + strand, within HGI48_RS01900 at 420.710 kb on + strand, within HGI48_RS01900 at 420.710 kb on + strand, within HGI48_RS01900 at 420.711 kb on - strand, within HGI48_RS01900 at 420.747 kb on - strand, within HGI48_RS01900 at 420.747 kb on - strand, within HGI48_RS01900 at 420.747 kb on - strand, within HGI48_RS01900 at 420.747 kb on - strand, within HGI48_RS01900 at 420.793 kb on + strand, within HGI48_RS01900 at 420.793 kb on + strand, within HGI48_RS01900 at 420.794 kb on - strand, within HGI48_RS01900 at 420.794 kb on - strand, within HGI48_RS01900 at 421.003 kb on + strand, within HGI48_RS01900 at 421.003 kb on + strand, within HGI48_RS01900 at 421.003 kb on + strand, within HGI48_RS01900 at 421.004 kb on - strand, within HGI48_RS01900 at 421.004 kb on - strand, within HGI48_RS01900 at 421.007 kb on + strand, within HGI48_RS01900 at 421.007 kb on + strand at 421.007 kb on + strand, within HGI48_RS01900 at 421.007 kb on + strand, within HGI48_RS01900 at 421.007 kb on + strand, within HGI48_RS01900 at 421.007 kb on + strand, within HGI48_RS01900 at 421.007 kb on + strand, within HGI48_RS01900 at 421.007 kb on + strand, within HGI48_RS01900 at 421.007 kb on + strand, within HGI48_RS01900 at 421.007 kb on + strand, within HGI48_RS01900 at 421.007 kb on + strand, within HGI48_RS01900 at 421.008 kb on - strand, within HGI48_RS01900 at 421.008 kb on - strand, within HGI48_RS01900 at 421.008 kb on - strand, within HGI48_RS01900 at 421.008 kb on - strand, within HGI48_RS01900 at 421.008 kb on - strand, within HGI48_RS01900 at 421.008 kb on - strand, within HGI48_RS01900 at 421.008 kb on - strand at 421.008 kb on - strand, within HGI48_RS01900 at 421.008 kb on - strand, within HGI48_RS01900 at 421.008 kb on - strand, within HGI48_RS01900 at 421.284 kb on + strand at 421.284 kb on + strand at 421.284 kb on + strand at 421.284 kb on + strand at 421.284 kb on + strand at 421.284 kb on + strand at 421.285 kb on - strand at 421.285 kb on - strand at 421.285 kb on - strand at 421.285 kb on - strand at 421.285 kb on - strand at 421.285 kb on - strand at 421.285 kb on - strand at 421.285 kb on - strand at 421.286 kb on + strand at 421.286 kb on + strand at 421.287 kb on - strand at 421.514 kb on + strand at 421.516 kb on + strand at 421.517 kb on - strand at 421.517 kb on - strand at 421.665 kb on + strand at 421.666 kb on - strand at 421.666 kb on - strand at 421.666 kb on - strand at 421.666 kb on - strand at 421.694 kb on - strand at 421.697 kb on + strand at 421.698 kb on - strand at 421.754 kb on - strand at 421.754 kb on - strand at 421.786 kb on + strand, within HGI48_RS01905 at 421.786 kb on + strand, within HGI48_RS01905 at 421.786 kb on + strand, within HGI48_RS01905 at 421.786 kb on + strand, within HGI48_RS01905 at 421.786 kb on + strand, within HGI48_RS01905 at 421.787 kb on - strand at 421.790 kb on + strand, within HGI48_RS01905 at 421.790 kb on + strand, within HGI48_RS01905 at 421.790 kb on + strand, within HGI48_RS01905 at 421.790 kb on + strand, within HGI48_RS01905 at 421.791 kb on - strand, within HGI48_RS01905 at 421.791 kb on - strand at 421.791 kb on - strand, within HGI48_RS01905 at 421.800 kb on + strand, within HGI48_RS01905 at 421.800 kb on + strand, within HGI48_RS01905 at 421.800 kb on + strand, within HGI48_RS01905 at 421.800 kb on + strand, within HGI48_RS01905 at 421.800 kb on + strand, within HGI48_RS01905 at 421.800 kb on + strand, within HGI48_RS01905 at 421.801 kb on - strand, within HGI48_RS01905 at 421.801 kb on - strand, within HGI48_RS01905 at 421.801 kb on - strand, within HGI48_RS01905 at 421.846 kb on - strand, within HGI48_RS01905 at 421.846 kb on - strand, within HGI48_RS01905 at 421.907 kb on - strand, within HGI48_RS01905 at 421.919 kb on - strand, within HGI48_RS01905 at 421.919 kb on - strand, within HGI48_RS01905 at 422.099 kb on + strand, within HGI48_RS01905 at 422.100 kb on - strand, within HGI48_RS01905 at 422.138 kb on + strand at 422.138 kb on + strand at 422.138 kb on + strand at 422.139 kb on - strand at 422.139 kb on - strand at 422.139 kb on - strand at 422.139 kb on - strand at 422.139 kb on - strand at 422.139 kb on - strand at 422.139 kb on - strand at 422.139 kb on - strand at 422.167 kb on - strand at 422.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 419,502 - +1.6 419,723 + HGI48_RS01890 0.87 -1.4 419,723 + HGI48_RS01890 0.87 +1.2 419,724 - HGI48_RS01890 0.87 -2.1 419,786 + -0.1 419,786 + -0.5 419,787 - +0.2 419,787 - -1.6 419,787 - +0.4 419,787 - -0.6 419,852 - +0.1 419,932 + -1.1 419,933 - HGI48_RS01895 0.10 +0.2 419,933 - HGI48_RS01895 0.10 -1.6 420,085 + HGI48_RS01895 0.43 -1.6 420,086 - HGI48_RS01895 0.43 +0.7 420,121 + HGI48_RS01895 0.51 -1.4 420,121 + HGI48_RS01895 0.51 -1.1 420,121 + HGI48_RS01895 0.51 -1.6 420,121 + +0.2 420,122 - HGI48_RS01895 0.51 +1.9 420,122 - HGI48_RS01895 0.51 -0.3 420,265 - HGI48_RS01895 0.82 -1.1 420,324 + -1.6 420,324 + -0.8 420,325 - -0.8 420,325 - -1.9 420,325 - +1.0 420,325 - -0.1 420,325 - -1.7 420,331 - -1.1 420,335 + +0.6 420,335 + -0.8 420,355 + -0.8 420,355 + -0.8 420,355 + -0.9 420,355 + -1.0 420,355 + -2.5 420,355 + -1.8 420,355 + -1.6 420,355 + -1.4 420,355 + -0.8 420,356 - -0.8 420,356 - -1.9 420,356 - -0.3 420,356 - -1.4 420,356 - -1.1 420,356 - -1.0 420,356 - +0.2 420,356 - -2.4 420,356 - -0.5 420,363 + +0.6 420,363 + -0.4 420,419 + -2.2 420,423 + -1.6 420,423 + -0.9 420,424 - -1.4 420,424 - -1.8 420,424 - -1.4 420,424 - -1.1 420,424 - -1.4 420,446 + -1.4 420,446 + -0.8 420,447 - -1.2 420,447 - -0.8 420,447 - -0.0 420,447 - -3.1 420,447 - -2.2 420,449 + -2.0 420,559 - HGI48_RS01900 0.21 -0.2 420,581 + HGI48_RS01900 0.23 -2.8 420,581 + +0.6 420,581 + HGI48_RS01900 0.23 -1.4 420,582 - HGI48_RS01900 0.23 +0.2 420,623 + HGI48_RS01900 0.27 -1.4 420,623 + HGI48_RS01900 0.27 -1.4 420,623 + HGI48_RS01900 0.27 -1.4 420,623 + HGI48_RS01900 0.27 -1.4 420,623 + HGI48_RS01900 0.27 -1.6 420,624 - HGI48_RS01900 0.27 -1.4 420,624 - HGI48_RS01900 0.27 -1.7 420,624 - HGI48_RS01900 0.27 -2.6 420,624 - HGI48_RS01900 0.27 -0.8 420,674 + HGI48_RS01900 0.33 -2.9 420,675 - HGI48_RS01900 0.33 -2.4 420,710 + HGI48_RS01900 0.37 -0.6 420,710 + HGI48_RS01900 0.37 -1.4 420,710 + HGI48_RS01900 0.37 -2.1 420,710 + HGI48_RS01900 0.37 -1.8 420,711 - HGI48_RS01900 0.37 -0.8 420,747 - HGI48_RS01900 0.41 -0.1 420,747 - HGI48_RS01900 0.41 -1.7 420,747 - HGI48_RS01900 0.41 -1.1 420,747 - HGI48_RS01900 0.41 -0.8 420,793 + HGI48_RS01900 0.46 -0.2 420,793 + HGI48_RS01900 0.46 -2.4 420,794 - HGI48_RS01900 0.46 -0.8 420,794 - HGI48_RS01900 0.46 +1.2 421,003 + HGI48_RS01900 0.68 -0.5 421,003 + HGI48_RS01900 0.68 -0.8 421,003 + HGI48_RS01900 0.68 -1.4 421,004 - HGI48_RS01900 0.68 -1.1 421,004 - HGI48_RS01900 0.68 -0.2 421,007 + HGI48_RS01900 0.68 -1.4 421,007 + -0.4 421,007 + HGI48_RS01900 0.68 -0.8 421,007 + HGI48_RS01900 0.68 -4.5 421,007 + HGI48_RS01900 0.68 -1.9 421,007 + HGI48_RS01900 0.68 -1.8 421,007 + HGI48_RS01900 0.68 -1.1 421,007 + HGI48_RS01900 0.68 -1.7 421,007 + HGI48_RS01900 0.68 -0.9 421,007 + HGI48_RS01900 0.68 +0.0 421,007 + HGI48_RS01900 0.68 -0.8 421,008 - HGI48_RS01900 0.68 -2.1 421,008 - HGI48_RS01900 0.68 -2.7 421,008 - HGI48_RS01900 0.68 -1.8 421,008 - HGI48_RS01900 0.68 -2.6 421,008 - HGI48_RS01900 0.68 -1.8 421,008 - HGI48_RS01900 0.68 +0.9 421,008 - +0.2 421,008 - HGI48_RS01900 0.68 +0.1 421,008 - HGI48_RS01900 0.68 +0.1 421,008 - HGI48_RS01900 0.68 -0.8 421,284 + -1.9 421,284 + -1.1 421,284 + -0.4 421,284 + -0.4 421,284 + +0.2 421,284 + -1.6 421,285 - -1.6 421,285 - -1.4 421,285 - -1.5 421,285 - -0.8 421,285 - -1.1 421,285 - -1.0 421,285 - -2.3 421,285 - -1.8 421,286 + -1.1 421,286 + -3.1 421,287 - -0.4 421,514 + -0.8 421,516 + -2.7 421,517 - -0.7 421,517 - -0.5 421,665 + -0.1 421,666 - +0.2 421,666 - +1.8 421,666 - +1.0 421,666 - +1.6 421,694 - -1.2 421,697 + +0.5 421,698 - -0.6 421,754 - -0.8 421,754 - -0.2 421,786 + HGI48_RS01905 0.15 -0.7 421,786 + HGI48_RS01905 0.15 -2.4 421,786 + HGI48_RS01905 0.15 -0.8 421,786 + HGI48_RS01905 0.15 -1.9 421,786 + HGI48_RS01905 0.15 -0.4 421,787 - +2.8 421,790 + HGI48_RS01905 0.16 -0.4 421,790 + HGI48_RS01905 0.16 -1.0 421,790 + HGI48_RS01905 0.16 +0.0 421,790 + HGI48_RS01905 0.16 -0.4 421,791 - HGI48_RS01905 0.16 -1.8 421,791 - +1.2 421,791 - HGI48_RS01905 0.16 -0.1 421,800 + HGI48_RS01905 0.18 -1.6 421,800 + HGI48_RS01905 0.18 +1.2 421,800 + HGI48_RS01905 0.18 -0.4 421,800 + HGI48_RS01905 0.18 -2.4 421,800 + HGI48_RS01905 0.18 -0.9 421,800 + HGI48_RS01905 0.18 -0.6 421,801 - HGI48_RS01905 0.19 -0.8 421,801 - HGI48_RS01905 0.19 -1.4 421,801 - HGI48_RS01905 0.19 -2.1 421,846 - HGI48_RS01905 0.28 -1.2 421,846 - HGI48_RS01905 0.28 -1.1 421,907 - HGI48_RS01905 0.41 +0.1 421,919 - HGI48_RS01905 0.44 -0.7 421,919 - HGI48_RS01905 0.44 -0.4 422,099 + HGI48_RS01905 0.82 +0.2 422,100 - HGI48_RS01905 0.82 +1.5 422,138 + +0.6 422,138 + +0.1 422,138 + -1.1 422,139 - +0.4 422,139 - -0.4 422,139 - +0.2 422,139 - -1.8 422,139 - +0.5 422,139 - +0.2 422,139 - -1.1 422,139 - -1.9 422,167 - -0.2 422,228 - +0.4
Or see this region's nucleotide sequence