Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01605 and HGI48_RS01610 are separated by 59 nucleotides HGI48_RS01610 and HGI48_RS01620 are separated by 599 nucleotides
HGI48_RS01605: HGI48_RS01605 - penicillin-binding protein activator, at 353,723 to 355,756
_RS01605
HGI48_RS01610: HGI48_RS01610 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 355,816 to 356,685
_RS01610
HGI48_RS01620: HGI48_RS01620 - 4,5-DOPA dioxygenase extradiol, at 357,285 to 358,073
_RS01620
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 355.076 kb on + strand, within HGI48_RS01605 at 355.076 kb on + strand, within HGI48_RS01605 at 355.279 kb on - strand at 355.335 kb on + strand, within HGI48_RS01605 at 355.335 kb on + strand, within HGI48_RS01605 at 355.336 kb on - strand, within HGI48_RS01605 at 355.550 kb on + strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.570 kb on + strand at 355.571 kb on - strand at 355.571 kb on - strand at 355.571 kb on - strand at 355.602 kb on + strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.605 kb on + strand at 355.605 kb on + strand at 355.605 kb on + strand at 355.606 kb on - strand at 355.606 kb on - strand at 355.634 kb on + strand at 355.634 kb on + strand at 355.634 kb on + strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.756 kb on + strand at 355.756 kb on + strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.762 kb on - strand at 355.762 kb on - strand at 355.777 kb on - strand at 355.777 kb on - strand at 355.789 kb on + strand at 355.789 kb on + strand at 355.790 kb on - strand at 355.790 kb on - strand at 355.792 kb on + strand at 355.793 kb on - strand at 355.858 kb on + strand at 355.858 kb on + strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.876 kb on - strand at 355.935 kb on + strand, within HGI48_RS01610 at 355.935 kb on + strand, within HGI48_RS01610 at 355.936 kb on - strand, within HGI48_RS01610 at 355.936 kb on - strand, within HGI48_RS01610 at 355.951 kb on - strand, within HGI48_RS01610 at 355.951 kb on - strand, within HGI48_RS01610 at 355.959 kb on + strand, within HGI48_RS01610 at 355.960 kb on - strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.973 kb on + strand, within HGI48_RS01610 at 355.973 kb on + strand, within HGI48_RS01610 at 355.973 kb on + strand at 355.989 kb on + strand, within HGI48_RS01610 at 356.122 kb on + strand, within HGI48_RS01610 at 356.122 kb on + strand at 356.236 kb on + strand, within HGI48_RS01610 at 356.236 kb on + strand, within HGI48_RS01610 at 356.236 kb on + strand, within HGI48_RS01610 at 356.237 kb on - strand at 356.237 kb on - strand, within HGI48_RS01610 at 356.256 kb on + strand, within HGI48_RS01610 at 356.277 kb on + strand, within HGI48_RS01610 at 356.278 kb on - strand at 356.321 kb on - strand, within HGI48_RS01610 at 356.346 kb on + strand, within HGI48_RS01610 at 356.346 kb on + strand at 356.347 kb on - strand, within HGI48_RS01610 at 356.386 kb on + strand at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.432 kb on - strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.647 kb on + strand at 356.683 kb on + strand at 357.213 kb on - strand at 357.226 kb on + strand at 357.226 kb on + strand at 357.226 kb on + strand at 357.227 kb on - strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.233 kb on - strand at 357.233 kb on - strand at 357.237 kb on + strand at 357.237 kb on + strand at 357.237 kb on + strand at 357.237 kb on + strand at 357.237 kb on + strand at 357.238 kb on - strand at 357.238 kb on - strand at 357.250 kb on + strand at 357.250 kb on + strand at 357.251 kb on - strand at 357.254 kb on + strand at 357.254 kb on + strand at 357.254 kb on + strand at 357.254 kb on + strand at 357.254 kb on + strand at 357.254 kb on + strand at 357.255 kb on - strand at 357.272 kb on + strand at 357.278 kb on + strand at 357.278 kb on + strand at 357.278 kb on + strand at 357.357 kb on + strand at 357.358 kb on - strand at 357.375 kb on - strand, within HGI48_RS01620 at 357.432 kb on + strand, within HGI48_RS01620 at 357.432 kb on + strand, within HGI48_RS01620 at 357.432 kb on + strand, within HGI48_RS01620 at 357.432 kb on + strand, within HGI48_RS01620 at 357.432 kb on + strand, within HGI48_RS01620 at 357.433 kb on - strand, within HGI48_RS01620 at 357.433 kb on - strand, within HGI48_RS01620 at 357.433 kb on - strand, within HGI48_RS01620 at 357.433 kb on - strand, within HGI48_RS01620 at 357.434 kb on + strand, within HGI48_RS01620 at 357.464 kb on + strand, within HGI48_RS01620 at 357.588 kb on + strand, within HGI48_RS01620 at 357.588 kb on + strand, within HGI48_RS01620 at 357.680 kb on + strand, within HGI48_RS01620 at 357.681 kb on - strand, within HGI48_RS01620 at 357.681 kb on - strand, within HGI48_RS01620 at 357.681 kb on - strand, within HGI48_RS01620 at 357.681 kb on - strand, within HGI48_RS01620 at 357.681 kb on - strand, within HGI48_RS01620
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 355,076 + HGI48_RS01605 0.67 +1.8 355,076 + HGI48_RS01605 0.67 -0.7 355,279 - +1.8 355,335 + HGI48_RS01605 0.79 -2.2 355,335 + HGI48_RS01605 0.79 +0.9 355,336 - HGI48_RS01605 0.79 -1.9 355,550 + HGI48_RS01605 0.90 -1.7 355,551 - HGI48_RS01605 0.90 -1.1 355,551 - HGI48_RS01605 0.90 -0.4 355,551 - HGI48_RS01605 0.90 -0.6 355,570 + -0.9 355,571 - -1.3 355,571 - +1.2 355,571 - -1.5 355,602 + -0.3 355,603 - -0.1 355,603 - -0.7 355,603 - -1.1 355,603 - -2.3 355,603 - +2.0 355,605 + -0.1 355,605 + +1.3 355,605 + +0.0 355,606 - +0.5 355,606 - -0.3 355,634 + -1.3 355,634 + +1.7 355,634 + -1.9 355,635 - +1.6 355,635 - -1.3 355,635 - +1.5 355,635 - -1.1 355,635 - -0.3 355,756 + -1.1 355,756 + -0.1 355,757 - +2.3 355,757 - +0.0 355,757 - -0.3 355,757 - -0.3 355,757 - +1.5 355,757 - -1.3 355,757 - -0.1 355,757 - -0.6 355,757 - -2.5 355,757 - +1.3 355,757 - -2.1 355,757 - -0.7 355,757 - +0.5 355,762 - -0.7 355,762 - -0.1 355,777 - +0.7 355,777 - -0.3 355,789 + -0.7 355,789 + -0.5 355,790 - -1.3 355,790 - -0.5 355,792 + -1.3 355,793 - -0.4 355,858 + +0.5 355,858 + -1.8 355,859 - +0.7 355,859 - -1.7 355,859 - -1.4 355,859 - -1.1 355,859 - +0.5 355,859 - -0.9 355,859 - +2.4 355,859 - -1.3 355,859 - -0.4 355,859 - -0.8 355,859 - +0.3 355,859 - +0.8 355,876 - +0.5 355,935 + HGI48_RS01610 0.14 -0.3 355,935 + HGI48_RS01610 0.14 -1.8 355,936 - HGI48_RS01610 0.14 -1.4 355,936 - HGI48_RS01610 0.14 -0.3 355,951 - HGI48_RS01610 0.16 -0.2 355,951 - HGI48_RS01610 0.16 -1.1 355,959 + HGI48_RS01610 0.16 -0.9 355,960 - HGI48_RS01610 0.17 -0.2 355,967 + HGI48_RS01610 0.17 +1.0 355,967 + HGI48_RS01610 0.17 -0.5 355,967 + HGI48_RS01610 0.17 +0.0 355,967 + HGI48_RS01610 0.17 +0.9 355,968 - HGI48_RS01610 0.17 -0.7 355,968 - HGI48_RS01610 0.17 -1.4 355,968 - HGI48_RS01610 0.17 -0.5 355,968 - HGI48_RS01610 0.17 -1.7 355,968 - HGI48_RS01610 0.17 -1.3 355,973 + HGI48_RS01610 0.18 -1.3 355,973 + HGI48_RS01610 0.18 -1.7 355,973 + +1.3 355,989 + HGI48_RS01610 0.20 +0.2 356,122 + HGI48_RS01610 0.35 -0.1 356,122 + +1.3 356,236 + HGI48_RS01610 0.48 -1.4 356,236 + HGI48_RS01610 0.48 -2.1 356,236 + HGI48_RS01610 0.48 -0.1 356,237 - -0.3 356,237 - HGI48_RS01610 0.48 -2.1 356,256 + HGI48_RS01610 0.51 -0.1 356,277 + HGI48_RS01610 0.53 -1.0 356,278 - -0.3 356,321 - HGI48_RS01610 0.58 -1.1 356,346 + HGI48_RS01610 0.61 -0.0 356,346 + -0.3 356,347 - HGI48_RS01610 0.61 +0.3 356,386 + +1.3 356,386 + HGI48_RS01610 0.66 +0.5 356,386 + HGI48_RS01610 0.66 +0.5 356,386 + HGI48_RS01610 0.66 -0.6 356,386 + HGI48_RS01610 0.66 -0.6 356,432 - HGI48_RS01610 0.71 -0.8 356,559 + HGI48_RS01610 0.85 -1.5 356,559 + HGI48_RS01610 0.85 +0.9 356,559 + HGI48_RS01610 0.85 +0.9 356,559 + HGI48_RS01610 0.85 -1.3 356,559 + HGI48_RS01610 0.85 +1.3 356,559 + HGI48_RS01610 0.85 -1.7 356,559 + HGI48_RS01610 0.85 +0.6 356,560 - HGI48_RS01610 0.86 +0.1 356,560 - HGI48_RS01610 0.86 -0.3 356,560 - HGI48_RS01610 0.86 -1.0 356,560 - HGI48_RS01610 0.86 -1.1 356,560 - HGI48_RS01610 0.86 -1.3 356,560 - HGI48_RS01610 0.86 -1.0 356,560 - HGI48_RS01610 0.86 -1.3 356,560 - HGI48_RS01610 0.86 +1.3 356,647 + +2.3 356,683 + +0.5 357,213 - -1.6 357,226 + -0.3 357,226 + +0.3 357,226 + +0.8 357,227 - -0.7 357,232 + +0.5 357,232 + -0.6 357,232 + -0.8 357,232 + -0.8 357,233 - +0.0 357,233 - +0.1 357,237 + -0.7 357,237 + -1.1 357,237 + -1.1 357,237 + -0.5 357,237 + +0.5 357,238 - -1.6 357,238 - +0.5 357,250 + -0.1 357,250 + -0.7 357,251 - -1.4 357,254 + -0.1 357,254 + -2.3 357,254 + -2.2 357,254 + -0.7 357,254 + -0.1 357,254 + +0.0 357,255 - -3.1 357,272 + +0.7 357,278 + -0.1 357,278 + -2.2 357,278 + -0.6 357,357 + +0.8 357,358 - -1.1 357,375 - HGI48_RS01620 0.11 -0.1 357,432 + HGI48_RS01620 0.19 -0.4 357,432 + HGI48_RS01620 0.19 -0.9 357,432 + HGI48_RS01620 0.19 +0.8 357,432 + HGI48_RS01620 0.19 -0.5 357,432 + HGI48_RS01620 0.19 +1.4 357,433 - HGI48_RS01620 0.19 -1.6 357,433 - HGI48_RS01620 0.19 +0.0 357,433 - HGI48_RS01620 0.19 -1.3 357,433 - HGI48_RS01620 0.19 -0.6 357,434 + HGI48_RS01620 0.19 -2.4 357,464 + HGI48_RS01620 0.23 -1.1 357,588 + HGI48_RS01620 0.38 +0.1 357,588 + HGI48_RS01620 0.38 -2.6 357,680 + HGI48_RS01620 0.50 -1.1 357,681 - HGI48_RS01620 0.50 +0.7 357,681 - HGI48_RS01620 0.50 -1.3 357,681 - HGI48_RS01620 0.50 +0.7 357,681 - HGI48_RS01620 0.50 -0.7 357,681 - HGI48_RS01620 0.50 +0.3
Or see this region's nucleotide sequence