Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01475 and HGI48_RS01480 are separated by 280 nucleotides HGI48_RS01480 and HGI48_RS01485 are separated by 3 nucleotides HGI48_RS01485 and HGI48_RS01490 are separated by 4 nucleotides
HGI48_RS01475: HGI48_RS01475 - calcium/sodium antiporter, at 325,652 to 326,614
_RS01475
HGI48_RS01480: HGI48_RS01480 - phospholipid ABC transporter ATP-binding protein MlaF, at 326,895 to 327,704
_RS01480
HGI48_RS01485: HGI48_RS01485 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 327,708 to 328,490
_RS01485
HGI48_RS01490: HGI48_RS01490 - outer membrane lipid asymmetry maintenance protein MlaD, at 328,495 to 329,109
_RS01490
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1
2 at 326.000 kb on - strand, within HGI48_RS01475 at 326.003 kb on - strand, within HGI48_RS01475 at 326.008 kb on - strand, within HGI48_RS01475 at 326.008 kb on - strand, within HGI48_RS01475 at 326.062 kb on + strand, within HGI48_RS01475 at 326.084 kb on + strand, within HGI48_RS01475 at 326.084 kb on + strand at 326.085 kb on - strand, within HGI48_RS01475 at 326.197 kb on + strand, within HGI48_RS01475 at 326.198 kb on - strand, within HGI48_RS01475 at 326.198 kb on - strand, within HGI48_RS01475 at 326.375 kb on - strand, within HGI48_RS01475 at 326.375 kb on - strand, within HGI48_RS01475 at 326.397 kb on - strand, within HGI48_RS01475 at 326.481 kb on - strand, within HGI48_RS01475 at 326.481 kb on - strand at 326.544 kb on + strand at 326.545 kb on - strand at 326.545 kb on - strand at 326.545 kb on - strand at 326.545 kb on - strand at 326.591 kb on + strand at 326.626 kb on + strand at 326.635 kb on - strand at 326.635 kb on - strand at 326.635 kb on - strand at 326.636 kb on + strand at 326.637 kb on - strand at 326.637 kb on - strand at 326.637 kb on - strand at 326.637 kb on - strand at 326.637 kb on - strand at 326.637 kb on - strand at 326.680 kb on + strand at 326.680 kb on + strand at 326.681 kb on - strand at 326.683 kb on + strand at 326.684 kb on - strand at 326.715 kb on + strand at 326.716 kb on - strand at 326.743 kb on - strand at 326.779 kb on + strand at 326.779 kb on + strand at 326.780 kb on - strand at 326.780 kb on - strand at 326.780 kb on - strand at 326.794 kb on - strand at 326.794 kb on - strand at 326.808 kb on - strand at 326.889 kb on + strand at 326.889 kb on + strand at 326.889 kb on + strand at 326.889 kb on + strand at 326.890 kb on - strand at 326.890 kb on - strand at 326.890 kb on - strand at 326.890 kb on - strand at 326.890 kb on - strand at 327.101 kb on + strand, within HGI48_RS01480 at 327.130 kb on - strand, within HGI48_RS01480 at 327.227 kb on + strand, within HGI48_RS01480 at 327.227 kb on + strand, within HGI48_RS01480 at 327.228 kb on - strand, within HGI48_RS01480 at 327.228 kb on - strand, within HGI48_RS01480 at 327.228 kb on - strand, within HGI48_RS01480 at 327.228 kb on - strand, within HGI48_RS01480 at 327.230 kb on - strand, within HGI48_RS01480 at 327.528 kb on + strand, within HGI48_RS01480 at 327.529 kb on - strand at 327.529 kb on - strand at 327.529 kb on - strand, within HGI48_RS01480 at 327.529 kb on - strand at 327.534 kb on + strand, within HGI48_RS01480 at 327.534 kb on + strand, within HGI48_RS01480 at 327.534 kb on + strand, within HGI48_RS01480 at 327.534 kb on + strand, within HGI48_RS01480 at 327.534 kb on + strand, within HGI48_RS01480 at 327.535 kb on - strand, within HGI48_RS01480 at 327.535 kb on - strand, within HGI48_RS01480 at 327.539 kb on + strand, within HGI48_RS01480 at 327.539 kb on + strand, within HGI48_RS01480 at 327.540 kb on - strand, within HGI48_RS01480 at 327.540 kb on - strand at 327.698 kb on + strand at 327.699 kb on - strand at 327.699 kb on - strand at 327.699 kb on - strand at 327.702 kb on + strand at 327.702 kb on + strand at 327.702 kb on + strand at 327.703 kb on - strand at 327.703 kb on - strand at 327.703 kb on - strand at 327.703 kb on - strand at 327.703 kb on - strand at 327.703 kb on - strand at 327.703 kb on - strand at 327.703 kb on - strand at 327.703 kb on - strand at 327.713 kb on - strand at 327.852 kb on + strand, within HGI48_RS01485 at 327.852 kb on + strand, within HGI48_RS01485 at 327.853 kb on - strand, within HGI48_RS01485 at 327.853 kb on - strand, within HGI48_RS01485 at 327.853 kb on - strand, within HGI48_RS01485 at 327.853 kb on - strand, within HGI48_RS01485 at 327.853 kb on - strand, within HGI48_RS01485 at 327.853 kb on - strand, within HGI48_RS01485 at 327.853 kb on - strand, within HGI48_RS01485 at 327.853 kb on - strand, within HGI48_RS01485 at 327.853 kb on - strand, within HGI48_RS01485 at 327.853 kb on - strand at 327.854 kb on + strand at 327.949 kb on - strand, within HGI48_RS01485 at 328.118 kb on - strand at 328.530 kb on - strand at 328.556 kb on + strand at 328.565 kb on + strand, within HGI48_RS01490 at 328.566 kb on - strand, within HGI48_RS01490 at 328.566 kb on - strand, within HGI48_RS01490 at 328.622 kb on - strand, within HGI48_RS01490 at 328.622 kb on - strand, within HGI48_RS01490 at 328.622 kb on - strand, within HGI48_RS01490 at 328.651 kb on - strand, within HGI48_RS01490 at 328.685 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 326,000 - HGI48_RS01475 0.36 +0.0 326,003 - HGI48_RS01475 0.36 -1.1 326,008 - HGI48_RS01475 0.37 +1.3 326,008 - HGI48_RS01475 0.37 +0.4 326,062 + HGI48_RS01475 0.43 -1.4 326,084 + HGI48_RS01475 0.45 -1.3 326,084 + -0.3 326,085 - HGI48_RS01475 0.45 -0.7 326,197 + HGI48_RS01475 0.57 +0.0 326,198 - HGI48_RS01475 0.57 +0.5 326,198 - HGI48_RS01475 0.57 +0.3 326,375 - HGI48_RS01475 0.75 -1.1 326,375 - HGI48_RS01475 0.75 -2.2 326,397 - HGI48_RS01475 0.77 -0.0 326,481 - HGI48_RS01475 0.86 -1.7 326,481 - +0.7 326,544 + +1.0 326,545 - -0.7 326,545 - -0.7 326,545 - -1.9 326,545 - -0.9 326,591 + -0.2 326,626 + -0.8 326,635 - +0.3 326,635 - +0.3 326,635 - +0.3 326,636 + +1.0 326,637 - -0.0 326,637 - -1.7 326,637 - +0.2 326,637 - +0.9 326,637 - -0.7 326,637 - -0.4 326,680 + -1.5 326,680 + -0.8 326,681 - +0.3 326,683 + +0.0 326,684 - -1.1 326,715 + -1.3 326,716 - -1.2 326,743 - -2.2 326,779 + -0.1 326,779 + -1.7 326,780 - -0.3 326,780 - +0.7 326,780 - -0.1 326,794 - +1.1 326,794 - +0.5 326,808 - +1.5 326,889 + -1.0 326,889 + +0.0 326,889 + -0.3 326,889 + +0.1 326,890 - +0.8 326,890 - -0.3 326,890 - +0.3 326,890 - -2.3 326,890 - -1.0 327,101 + HGI48_RS01480 0.25 +0.5 327,130 - HGI48_RS01480 0.29 -1.3 327,227 + HGI48_RS01480 0.41 -1.3 327,227 + HGI48_RS01480 0.41 -2.1 327,228 - HGI48_RS01480 0.41 +0.5 327,228 - HGI48_RS01480 0.41 -0.5 327,228 - HGI48_RS01480 0.41 -1.1 327,228 - HGI48_RS01480 0.41 -1.7 327,230 - HGI48_RS01480 0.41 -0.9 327,528 + HGI48_RS01480 0.78 +0.4 327,529 - +0.3 327,529 - +0.3 327,529 - HGI48_RS01480 0.78 -0.7 327,529 - -0.3 327,534 + HGI48_RS01480 0.79 -1.1 327,534 + HGI48_RS01480 0.79 -2.7 327,534 + HGI48_RS01480 0.79 -1.5 327,534 + HGI48_RS01480 0.79 -0.5 327,534 + HGI48_RS01480 0.79 +0.3 327,535 - HGI48_RS01480 0.79 -0.1 327,535 - HGI48_RS01480 0.79 -1.5 327,539 + HGI48_RS01480 0.80 -1.3 327,539 + HGI48_RS01480 0.80 -2.3 327,540 - HGI48_RS01480 0.80 +0.9 327,540 - +0.7 327,698 + +0.7 327,699 - -2.2 327,699 - -0.5 327,699 - +0.3 327,702 + -1.9 327,702 + +0.9 327,702 + -2.1 327,703 - -1.1 327,703 - +1.3 327,703 - -1.3 327,703 - +0.3 327,703 - -0.3 327,703 - +1.3 327,703 - -1.7 327,703 - -1.4 327,703 - -0.7 327,713 - -0.5 327,852 + HGI48_RS01485 0.18 -0.3 327,852 + HGI48_RS01485 0.18 -0.1 327,853 - HGI48_RS01485 0.19 +0.7 327,853 - HGI48_RS01485 0.19 -1.1 327,853 - HGI48_RS01485 0.19 +1.9 327,853 - HGI48_RS01485 0.19 -1.7 327,853 - HGI48_RS01485 0.19 -0.7 327,853 - HGI48_RS01485 0.19 +0.5 327,853 - HGI48_RS01485 0.19 +0.5 327,853 - HGI48_RS01485 0.19 -0.9 327,853 - HGI48_RS01485 0.19 +0.3 327,853 - +0.7 327,854 + +1.9 327,949 - HGI48_RS01485 0.31 -0.2 328,118 - +0.7 328,530 - -0.3 328,556 + -1.5 328,565 + HGI48_RS01490 0.11 +0.7 328,566 - HGI48_RS01490 0.12 -1.9 328,566 - HGI48_RS01490 0.12 -0.5 328,622 - HGI48_RS01490 0.21 -1.1 328,622 - HGI48_RS01490 0.21 -0.7 328,622 - HGI48_RS01490 0.21 -1.2 328,651 - HGI48_RS01490 0.25 -0.2 328,685 + -0.3
Or see this region's nucleotide sequence