Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01095 and HGI48_RS01100 are separated by 320 nucleotides HGI48_RS01100 and HGI48_RS01105 are separated by 276 nucleotides HGI48_RS01105 and HGI48_RS01110 are separated by 224 nucleotides
HGI48_RS01095: HGI48_RS01095 - DNA-directed RNA polymerase subunit beta', at 245,758 to 249,981
_RS01095
HGI48_RS01100: HGI48_RS01100 - DUF1176 domain-containing protein, at 250,302 to 251,399
_RS01100
HGI48_RS01105: HGI48_RS01105 - DUF1127 domain-containing protein, at 251,676 to 251,858
_RS01105
HGI48_RS01110: HGI48_RS01110 - DUF1127 domain-containing protein, at 252,083 to 252,268
_RS01110
Position (kb) 250
251
252 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 249.980 kb on - strand at 250.039 kb on + strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.048 kb on - strand at 250.048 kb on - strand at 250.048 kb on - strand at 250.067 kb on + strand at 250.072 kb on - strand at 250.098 kb on + strand at 250.098 kb on + strand at 250.098 kb on + strand at 250.099 kb on - strand at 250.099 kb on - strand at 250.136 kb on + strand at 250.157 kb on + strand at 250.157 kb on + strand at 250.182 kb on + strand at 250.182 kb on + strand at 250.183 kb on - strand at 250.183 kb on - strand at 250.256 kb on + strand at 250.256 kb on + strand at 250.256 kb on + strand at 250.256 kb on + strand at 250.256 kb on + strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.257 kb on - strand at 250.265 kb on + strand at 250.266 kb on - strand at 250.266 kb on - strand at 250.266 kb on - strand at 250.267 kb on + strand at 250.267 kb on + strand at 250.267 kb on + strand at 250.268 kb on - strand at 250.289 kb on + strand at 250.289 kb on + strand at 250.313 kb on + strand at 250.314 kb on - strand at 250.314 kb on - strand at 250.408 kb on + strand at 250.409 kb on - strand at 250.409 kb on - strand at 250.427 kb on + strand, within HGI48_RS01100 at 250.427 kb on + strand, within HGI48_RS01100 at 250.428 kb on - strand, within HGI48_RS01100 at 250.428 kb on - strand, within HGI48_RS01100 at 250.428 kb on - strand, within HGI48_RS01100 at 250.433 kb on + strand, within HGI48_RS01100 at 250.433 kb on + strand at 250.433 kb on + strand, within HGI48_RS01100 at 250.433 kb on + strand, within HGI48_RS01100 at 250.433 kb on + strand, within HGI48_RS01100 at 250.433 kb on + strand, within HGI48_RS01100 at 250.433 kb on + strand, within HGI48_RS01100 at 250.434 kb on - strand, within HGI48_RS01100 at 250.434 kb on - strand, within HGI48_RS01100 at 250.434 kb on - strand, within HGI48_RS01100 at 250.473 kb on + strand, within HGI48_RS01100 at 250.544 kb on + strand, within HGI48_RS01100 at 250.560 kb on + strand, within HGI48_RS01100 at 250.560 kb on + strand, within HGI48_RS01100 at 250.560 kb on + strand at 250.629 kb on + strand, within HGI48_RS01100 at 250.630 kb on - strand, within HGI48_RS01100 at 250.637 kb on + strand, within HGI48_RS01100 at 250.730 kb on + strand, within HGI48_RS01100 at 250.822 kb on + strand, within HGI48_RS01100 at 250.822 kb on + strand, within HGI48_RS01100 at 250.893 kb on + strand, within HGI48_RS01100 at 250.893 kb on + strand, within HGI48_RS01100 at 251.073 kb on + strand, within HGI48_RS01100 at 251.074 kb on - strand, within HGI48_RS01100 at 251.205 kb on + strand, within HGI48_RS01100 at 251.205 kb on + strand, within HGI48_RS01100 at 251.205 kb on + strand, within HGI48_RS01100 at 251.206 kb on - strand, within HGI48_RS01100 at 251.206 kb on - strand, within HGI48_RS01100 at 251.229 kb on + strand, within HGI48_RS01100 at 251.229 kb on + strand, within HGI48_RS01100 at 251.229 kb on + strand, within HGI48_RS01100 at 251.229 kb on + strand, within HGI48_RS01100 at 251.230 kb on - strand, within HGI48_RS01100 at 251.230 kb on - strand, within HGI48_RS01100 at 251.230 kb on - strand at 251.230 kb on - strand, within HGI48_RS01100 at 251.316 kb on + strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.322 kb on + strand at 251.322 kb on + strand at 251.323 kb on - strand at 251.336 kb on + strand at 251.337 kb on - strand at 251.337 kb on - strand at 251.337 kb on - strand at 251.337 kb on - strand at 251.478 kb on + strand at 251.478 kb on + strand at 251.479 kb on - strand at 251.498 kb on - strand at 251.514 kb on + strand at 251.514 kb on + strand at 251.514 kb on + strand at 251.515 kb on - strand at 251.515 kb on - strand at 251.546 kb on + strand at 251.547 kb on - strand at 251.594 kb on + strand at 251.594 kb on + strand at 251.595 kb on - strand at 251.595 kb on - strand at 251.595 kb on - strand at 251.595 kb on - strand at 251.612 kb on + strand at 251.648 kb on + strand at 251.648 kb on + strand at 251.648 kb on + strand at 251.656 kb on - strand at 251.739 kb on - strand, within HGI48_RS01105 at 251.831 kb on + strand, within HGI48_RS01105 at 251.832 kb on - strand, within HGI48_RS01105 at 251.832 kb on - strand, within HGI48_RS01105 at 251.888 kb on + strand at 251.889 kb on - strand at 251.944 kb on + strand at 251.944 kb on + strand at 251.945 kb on - strand at 251.945 kb on - strand at 251.945 kb on - strand at 251.945 kb on - strand at 251.945 kb on - strand at 251.994 kb on - strand at 252.023 kb on - strand at 252.035 kb on + strand at 252.262 kb on + strand at 252.262 kb on + strand at 252.262 kb on + strand at 252.263 kb on - strand at 252.263 kb on - strand at 252.271 kb on + strand at 252.271 kb on + strand at 252.272 kb on - strand at 252.272 kb on - strand at 252.272 kb on - strand at 252.356 kb on + strand at 252.357 kb on - strand at 252.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 249,980 - -1.9 250,039 + -0.7 250,047 + -0.7 250,047 + +1.0 250,047 + +0.3 250,047 + +0.3 250,047 + -1.7 250,048 - -0.0 250,048 - -2.3 250,048 - +0.8 250,067 + +0.0 250,072 - +1.7 250,098 + -0.0 250,098 + +0.4 250,098 + -1.0 250,099 - -0.0 250,099 - -1.0 250,136 + +1.7 250,157 + -0.7 250,157 + -1.3 250,182 + +0.1 250,182 + -1.3 250,183 - -1.0 250,183 - -0.1 250,256 + -0.4 250,256 + -0.7 250,256 + -0.3 250,256 + -1.7 250,256 + +1.3 250,257 - -1.3 250,257 - +0.3 250,257 - +0.8 250,257 - +0.3 250,257 - -0.3 250,257 - -1.0 250,257 - -0.3 250,265 + -1.5 250,266 - +0.5 250,266 - +0.0 250,266 - +0.5 250,267 + +0.1 250,267 + -1.4 250,267 + +0.2 250,268 - -0.3 250,289 + -0.2 250,289 + +0.3 250,313 + -0.5 250,314 - +0.5 250,314 - -0.7 250,408 + -0.9 250,409 - -0.5 250,409 - -1.0 250,427 + HGI48_RS01100 0.11 -0.5 250,427 + HGI48_RS01100 0.11 +1.2 250,428 - HGI48_RS01100 0.11 +0.1 250,428 - HGI48_RS01100 0.11 +0.8 250,428 - HGI48_RS01100 0.11 -1.8 250,433 + HGI48_RS01100 0.12 -2.2 250,433 + +3.6 250,433 + HGI48_RS01100 0.12 +0.3 250,433 + HGI48_RS01100 0.12 -0.0 250,433 + HGI48_RS01100 0.12 +0.3 250,433 + HGI48_RS01100 0.12 -0.9 250,433 + HGI48_RS01100 0.12 -1.0 250,434 - HGI48_RS01100 0.12 +0.6 250,434 - HGI48_RS01100 0.12 +1.1 250,434 - HGI48_RS01100 0.12 -1.0 250,473 + HGI48_RS01100 0.16 +1.0 250,544 + HGI48_RS01100 0.22 -0.5 250,560 + HGI48_RS01100 0.23 +0.2 250,560 + HGI48_RS01100 0.23 -1.5 250,560 + +0.3 250,629 + HGI48_RS01100 0.30 -1.2 250,630 - HGI48_RS01100 0.30 +0.4 250,637 + HGI48_RS01100 0.31 -0.1 250,730 + HGI48_RS01100 0.39 -0.4 250,822 + HGI48_RS01100 0.47 +1.1 250,822 + HGI48_RS01100 0.47 +0.5 250,893 + HGI48_RS01100 0.54 -0.7 250,893 + HGI48_RS01100 0.54 -0.5 251,073 + HGI48_RS01100 0.70 -0.6 251,074 - HGI48_RS01100 0.70 +0.1 251,205 + HGI48_RS01100 0.82 +0.5 251,205 + HGI48_RS01100 0.82 -1.7 251,205 + HGI48_RS01100 0.82 +0.3 251,206 - HGI48_RS01100 0.82 -1.0 251,206 - HGI48_RS01100 0.82 +0.2 251,229 + HGI48_RS01100 0.84 -0.6 251,229 + HGI48_RS01100 0.84 +0.2 251,229 + HGI48_RS01100 0.84 -1.2 251,229 + HGI48_RS01100 0.84 -0.3 251,230 - HGI48_RS01100 0.85 -1.0 251,230 - HGI48_RS01100 0.85 -1.0 251,230 - +0.3 251,230 - HGI48_RS01100 0.85 +1.8 251,316 + -0.3 251,317 - +0.5 251,317 - -0.0 251,317 - -1.7 251,317 - -1.5 251,317 - -0.5 251,322 + -0.2 251,322 + -0.8 251,323 - +1.7 251,336 + +1.0 251,337 - +0.3 251,337 - -0.4 251,337 - +0.3 251,337 - -1.0 251,478 + +0.3 251,478 + -1.3 251,479 - -0.0 251,498 - -0.3 251,514 + -1.5 251,514 + -0.2 251,514 + -1.7 251,515 - -0.0 251,515 - -0.5 251,546 + -0.5 251,547 - -1.5 251,594 + +1.3 251,594 + -1.0 251,595 - +1.1 251,595 - -0.7 251,595 - -0.7 251,595 - -2.0 251,612 + -0.2 251,648 + -1.0 251,648 + +0.3 251,648 + -0.7 251,656 - -0.5 251,739 - HGI48_RS01105 0.34 +1.2 251,831 + HGI48_RS01105 0.85 -0.0 251,832 - HGI48_RS01105 0.85 -1.5 251,832 - HGI48_RS01105 0.85 +1.5 251,888 + -0.4 251,889 - -0.3 251,944 + -0.8 251,944 + +2.4 251,945 - -1.5 251,945 - +1.1 251,945 - -2.1 251,945 - +1.7 251,945 - -0.6 251,994 - +1.7 252,023 - -0.3 252,035 + +1.1 252,262 + +1.6 252,262 + -0.0 252,262 + -0.3 252,263 - -0.4 252,263 - -0.5 252,271 + +0.7 252,271 + -0.3 252,272 - -1.1 252,272 - -0.9 252,272 - -0.3 252,356 + -0.9 252,357 - +1.3 252,367 + -1.4
Or see this region's nucleotide sequence