Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00950 and HGI48_RS00955 are separated by 138 nucleotides HGI48_RS00955 and HGI48_RS00960 are separated by 36 nucleotides HGI48_RS00960 and HGI48_RS00965 are separated by 25 nucleotides HGI48_RS00965 and HGI48_RS00970 are separated by 52 nucleotides
HGI48_RS00950: HGI48_RS00950 - FAD-dependent oxidoreductase, at 215,798 to 217,489
_RS00950
HGI48_RS00955: HGI48_RS00955 - helix-turn-helix transcriptional regulator, at 217,628 to 217,945
_RS00955
HGI48_RS00960: HGI48_RS00960 - YeeE/YedE family protein, at 217,982 to 218,410
_RS00960
HGI48_RS00965: HGI48_RS00965 - YeeE/YedE family protein, at 218,436 to 218,864
_RS00965
HGI48_RS00970: HGI48_RS00970 - acetyl-CoA C-acyltransferase FadA, at 218,917 to 220,080
_RS00970
Position (kb) 218
219 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 217.477 kb on + strand at 217.477 kb on + strand at 217.477 kb on + strand at 217.478 kb on - strand at 217.478 kb on - strand at 217.478 kb on - strand at 217.508 kb on + strand at 217.509 kb on - strand at 217.878 kb on - strand at 217.912 kb on + strand, within HGI48_RS00955 at 217.912 kb on + strand, within HGI48_RS00955 at 217.913 kb on - strand, within HGI48_RS00955 at 217.915 kb on + strand at 217.915 kb on + strand at 217.915 kb on + strand at 217.916 kb on - strand at 217.922 kb on + strand at 217.923 kb on - strand at 217.923 kb on - strand at 217.923 kb on - strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.931 kb on + strand at 217.932 kb on - strand at 217.932 kb on - strand at 217.932 kb on - strand at 217.932 kb on - strand at 217.943 kb on + strand at 217.944 kb on - strand at 217.944 kb on - strand at 217.993 kb on + strand at 217.994 kb on - strand at 217.994 kb on - strand at 218.032 kb on + strand, within HGI48_RS00960 at 218.033 kb on - strand, within HGI48_RS00960 at 218.033 kb on - strand, within HGI48_RS00960 at 218.241 kb on + strand, within HGI48_RS00960 at 218.446 kb on + strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.447 kb on - strand at 218.534 kb on + strand, within HGI48_RS00965 at 218.538 kb on - strand, within HGI48_RS00965 at 218.538 kb on - strand, within HGI48_RS00965 at 218.766 kb on + strand, within HGI48_RS00965 at 218.767 kb on - strand at 218.823 kb on + strand at 218.823 kb on + strand at 218.823 kb on + strand at 218.823 kb on + strand at 218.824 kb on - strand at 218.824 kb on - strand at 218.824 kb on - strand at 218.824 kb on - strand at 218.921 kb on - strand at 218.932 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.967 kb on + strand at 218.968 kb on - strand at 218.968 kb on - strand at 218.968 kb on - strand at 218.968 kb on - strand at 218.968 kb on - strand at 218.968 kb on - strand at 219.010 kb on - strand at 219.010 kb on - strand at 219.205 kb on + strand, within HGI48_RS00970 at 219.513 kb on + strand, within HGI48_RS00970
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 217,477 + +0.1 217,477 + +1.9 217,477 + -0.5 217,478 - -1.4 217,478 - -0.1 217,478 - -0.5 217,508 + -0.3 217,509 - +0.8 217,878 - +1.3 217,912 + HGI48_RS00955 0.89 -1.4 217,912 + HGI48_RS00955 0.89 +0.1 217,913 - HGI48_RS00955 0.90 -0.4 217,915 + -1.0 217,915 + -0.3 217,915 + +0.8 217,916 - -0.1 217,922 + +0.7 217,923 - -1.3 217,923 - -0.7 217,923 - +0.3 217,931 + +0.1 217,931 + -0.1 217,931 + -0.3 217,931 + -0.3 217,931 + -0.3 217,931 + -0.5 217,931 + +1.3 217,932 - -0.5 217,932 - -1.9 217,932 - -1.9 217,932 - -1.3 217,943 + +0.4 217,944 - +0.4 217,944 - +0.1 217,993 + -1.7 217,994 - -1.3 217,994 - -2.0 218,032 + HGI48_RS00960 0.12 -0.9 218,033 - HGI48_RS00960 0.12 +0.2 218,033 - HGI48_RS00960 0.12 -1.2 218,241 + HGI48_RS00960 0.60 -1.4 218,446 + -1.1 218,447 - -1.1 218,447 - +0.1 218,447 - -0.5 218,447 - -0.3 218,447 - -1.3 218,447 - -0.7 218,534 + HGI48_RS00965 0.23 -0.9 218,538 - HGI48_RS00965 0.24 +0.2 218,538 - HGI48_RS00965 0.24 -1.5 218,766 + HGI48_RS00965 0.77 -2.3 218,767 - +0.3 218,823 + -0.8 218,823 + -0.3 218,823 + -1.7 218,823 + +1.3 218,824 - -1.3 218,824 - -1.5 218,824 - -1.0 218,824 - +0.5 218,921 - +2.9 218,932 + -0.3 218,967 + +1.7 218,967 + -0.0 218,967 + -0.7 218,967 + +0.5 218,967 + +0.3 218,967 + -0.3 218,967 + -0.7 218,967 + +0.5 218,968 - -1.7 218,968 - +1.3 218,968 - +1.0 218,968 - +0.9 218,968 - -1.7 218,968 - -1.2 219,010 - -1.0 219,010 - -0.3 219,205 + HGI48_RS00970 0.25 -1.3 219,513 + HGI48_RS00970 0.51 -1.1
Or see this region's nucleotide sequence