Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00930 and HGI48_RS00935 are separated by 31 nucleotides HGI48_RS00935 and HGI48_RS00940 are separated by 212 nucleotides
HGI48_RS00930: HGI48_RS00930 - porphobilinogen synthase, at 211,708 to 212,730
_RS00930
HGI48_RS00935: HGI48_RS00935 - transcription/translation regulatory transformer protein RfaH, at 212,762 to 213,250
_RS00935
HGI48_RS00940: HGI48_RS00940 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 213,463 to 214,950
_RS00940
Position (kb) 212
213
214 Strain fitness (log2 ratio) -2
-1
0
1
2 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand at 212.862 kb on + strand at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.862 kb on + strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.863 kb on - strand, within HGI48_RS00935 at 212.866 kb on + strand, within HGI48_RS00935 at 212.866 kb on + strand, within HGI48_RS00935 at 212.867 kb on - strand, within HGI48_RS00935 at 212.867 kb on - strand, within HGI48_RS00935 at 212.904 kb on - strand, within HGI48_RS00935 at 212.904 kb on - strand, within HGI48_RS00935 at 212.939 kb on - strand, within HGI48_RS00935 at 212.939 kb on - strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.059 kb on + strand, within HGI48_RS00935 at 213.060 kb on - strand, within HGI48_RS00935 at 213.060 kb on - strand, within HGI48_RS00935 at 213.060 kb on - strand, within HGI48_RS00935 at 213.060 kb on - strand at 213.060 kb on - strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.090 kb on + strand, within HGI48_RS00935 at 213.091 kb on - strand, within HGI48_RS00935 at 213.091 kb on - strand, within HGI48_RS00935 at 213.228 kb on + strand at 213.228 kb on + strand at 213.228 kb on + strand at 213.229 kb on - strand at 213.229 kb on - strand at 213.229 kb on - strand at 213.233 kb on + strand at 213.234 kb on - strand at 213.387 kb on + strand at 213.388 kb on - strand at 213.425 kb on + strand at 213.425 kb on + strand at 213.425 kb on + strand at 213.425 kb on + strand at 213.425 kb on + strand at 213.426 kb on - strand at 213.426 kb on - strand at 213.426 kb on - strand at 213.427 kb on + strand at 213.427 kb on + strand at 213.427 kb on + strand at 213.430 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 212,862 + HGI48_RS00935 0.20 -0.7 212,862 + HGI48_RS00935 0.20 -1.3 212,862 + HGI48_RS00935 0.20 +0.3 212,862 + HGI48_RS00935 0.20 -0.3 212,862 + HGI48_RS00935 0.20 -1.6 212,862 + HGI48_RS00935 0.20 -1.7 212,862 + HGI48_RS00935 0.20 -0.1 212,862 + HGI48_RS00935 0.20 -1.4 212,862 + HGI48_RS00935 0.20 -1.4 212,862 + HGI48_RS00935 0.20 +0.3 212,862 + HGI48_RS00935 0.20 -2.2 212,862 + +0.3 212,862 + +0.7 212,862 + HGI48_RS00935 0.20 +0.1 212,862 + HGI48_RS00935 0.20 -0.7 212,862 + HGI48_RS00935 0.20 -0.0 212,863 - HGI48_RS00935 0.21 -1.7 212,863 - +2.3 212,863 - HGI48_RS00935 0.21 -0.5 212,863 - HGI48_RS00935 0.21 +0.3 212,863 - HGI48_RS00935 0.21 -0.7 212,863 - HGI48_RS00935 0.21 +0.3 212,863 - HGI48_RS00935 0.21 -1.5 212,863 - HGI48_RS00935 0.21 -0.7 212,863 - HGI48_RS00935 0.21 -0.8 212,866 + HGI48_RS00935 0.21 +0.7 212,866 + HGI48_RS00935 0.21 -0.7 212,867 - HGI48_RS00935 0.21 -0.9 212,867 - HGI48_RS00935 0.21 -1.3 212,904 - HGI48_RS00935 0.29 -1.9 212,904 - HGI48_RS00935 0.29 -0.3 212,939 - HGI48_RS00935 0.36 -1.7 212,939 - HGI48_RS00935 0.36 -1.7 213,059 + HGI48_RS00935 0.61 -1.0 213,059 + HGI48_RS00935 0.61 -0.9 213,059 + HGI48_RS00935 0.61 +0.2 213,059 + HGI48_RS00935 0.61 +0.3 213,059 + HGI48_RS00935 0.61 -0.5 213,059 + HGI48_RS00935 0.61 -0.7 213,059 + HGI48_RS00935 0.61 -0.6 213,059 + HGI48_RS00935 0.61 -1.9 213,059 + HGI48_RS00935 0.61 +0.1 213,059 + HGI48_RS00935 0.61 -0.7 213,060 - HGI48_RS00935 0.61 +0.4 213,060 - HGI48_RS00935 0.61 +0.3 213,060 - HGI48_RS00935 0.61 +0.4 213,060 - +0.7 213,060 - HGI48_RS00935 0.61 -1.5 213,090 + HGI48_RS00935 0.67 -1.5 213,090 + HGI48_RS00935 0.67 +0.1 213,090 + HGI48_RS00935 0.67 +0.5 213,090 + HGI48_RS00935 0.67 -1.2 213,090 + HGI48_RS00935 0.67 -0.7 213,090 + HGI48_RS00935 0.67 +1.3 213,090 + HGI48_RS00935 0.67 +0.7 213,091 - HGI48_RS00935 0.67 -0.5 213,091 - HGI48_RS00935 0.67 +0.7 213,228 + +0.7 213,228 + -1.2 213,228 + -0.8 213,229 - -0.9 213,229 - -1.0 213,229 - -1.5 213,233 + +0.9 213,234 - +0.1 213,387 + +0.3 213,388 - -0.7 213,425 + -1.4 213,425 + -1.0 213,425 + -0.1 213,425 + -1.3 213,425 + +0.3 213,426 - -0.3 213,426 - +0.3 213,426 - -0.0 213,427 + -0.0 213,427 + +1.3 213,427 + +0.2 213,430 + -1.6
Or see this region's nucleotide sequence