Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00665 and HGI48_RS00670 are separated by 6 nucleotides HGI48_RS00670 and HGI48_RS00675 are separated by 178 nucleotides HGI48_RS00675 and HGI48_RS00680 are separated by 111 nucleotides HGI48_RS00680 and HGI48_RS00685 are separated by 65 nucleotides
HGI48_RS00665: HGI48_RS00665 - DUF202 domain-containing protein, at 158,048 to 158,386
_RS00665
HGI48_RS00670: HGI48_RS00670 - DUF202 domain-containing protein, at 158,393 to 158,785
_RS00670
HGI48_RS00675: HGI48_RS00675 - ribonuclease PH, at 158,964 to 159,680
_RS00675
HGI48_RS00680: HGI48_RS00680 - orotate phosphoribosyltransferase, at 159,792 to 160,433
_RS00680
HGI48_RS00685: HGI48_RS00685 - nucleoid occlusion factor SlmA, at 160,499 to 161,095
_RS00685
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 157.987 kb on - strand at 158.017 kb on + strand at 158.018 kb on - strand at 158.078 kb on + strand at 158.108 kb on + strand, within HGI48_RS00665 at 158.188 kb on + strand, within HGI48_RS00665 at 158.188 kb on + strand, within HGI48_RS00665 at 158.189 kb on - strand at 158.189 kb on - strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.471 kb on - strand, within HGI48_RS00670 at 158.471 kb on - strand, within HGI48_RS00670 at 158.473 kb on - strand, within HGI48_RS00670 at 158.818 kb on + strand at 158.818 kb on + strand at 158.818 kb on + strand at 158.818 kb on + strand at 158.819 kb on - strand at 158.819 kb on - strand at 158.819 kb on - strand at 158.841 kb on + strand at 158.922 kb on + strand at 158.922 kb on + strand at 158.922 kb on + strand at 158.922 kb on + strand at 158.922 kb on + strand at 158.923 kb on - strand at 158.923 kb on - strand at 158.923 kb on - strand at 158.923 kb on - strand at 158.925 kb on - strand at 158.925 kb on - strand at 158.925 kb on - strand at 158.925 kb on - strand at 158.940 kb on - strand at 159.022 kb on - strand at 159.022 kb on - strand at 159.065 kb on + strand, within HGI48_RS00675 at 159.151 kb on - strand, within HGI48_RS00675 at 159.151 kb on - strand at 159.171 kb on - strand, within HGI48_RS00675 at 159.291 kb on + strand, within HGI48_RS00675 at 159.291 kb on + strand, within HGI48_RS00675 at 159.291 kb on + strand, within HGI48_RS00675 at 159.291 kb on + strand, within HGI48_RS00675 at 159.291 kb on + strand, within HGI48_RS00675 at 159.291 kb on + strand, within HGI48_RS00675 at 159.291 kb on + strand, within HGI48_RS00675 at 159.291 kb on + strand at 159.292 kb on - strand, within HGI48_RS00675 at 159.292 kb on - strand, within HGI48_RS00675 at 159.292 kb on - strand, within HGI48_RS00675 at 159.292 kb on - strand, within HGI48_RS00675 at 159.299 kb on + strand, within HGI48_RS00675 at 159.492 kb on + strand, within HGI48_RS00675 at 159.493 kb on - strand, within HGI48_RS00675 at 159.493 kb on - strand, within HGI48_RS00675 at 159.493 kb on - strand, within HGI48_RS00675 at 159.713 kb on + strand at 159.714 kb on - strand at 159.714 kb on - strand at 159.714 kb on - strand at 159.714 kb on - strand at 159.716 kb on - strand at 159.716 kb on - strand at 159.729 kb on + strand at 159.729 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.734 kb on + strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.735 kb on - strand at 159.801 kb on + strand at 159.802 kb on - strand at 159.878 kb on + strand at 159.878 kb on + strand, within HGI48_RS00680 at 159.878 kb on + strand, within HGI48_RS00680 at 159.888 kb on + strand, within HGI48_RS00680 at 160.005 kb on + strand, within HGI48_RS00680 at 160.006 kb on - strand, within HGI48_RS00680 at 160.006 kb on - strand, within HGI48_RS00680 at 160.006 kb on - strand, within HGI48_RS00680 at 160.088 kb on + strand, within HGI48_RS00680 at 160.312 kb on - strand, within HGI48_RS00680 at 160.432 kb on - strand at 160.467 kb on + strand at 160.467 kb on + strand at 160.468 kb on - strand at 160.468 kb on - strand at 160.468 kb on - strand at 160.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 157,987 - +0.7 158,017 + -1.3 158,018 - -1.7 158,078 + -0.7 158,108 + HGI48_RS00665 0.18 -0.7 158,188 + HGI48_RS00665 0.41 -1.0 158,188 + HGI48_RS00665 0.41 -1.2 158,189 - +1.3 158,189 - HGI48_RS00665 0.42 -0.1 158,190 + HGI48_RS00665 0.42 +0.6 158,190 + HGI48_RS00665 0.42 -0.2 158,190 + HGI48_RS00665 0.42 -0.9 158,190 + HGI48_RS00665 0.42 +2.3 158,190 + HGI48_RS00665 0.42 -0.3 158,190 + HGI48_RS00665 0.42 -1.0 158,190 + HGI48_RS00665 0.42 -1.3 158,190 + +1.7 158,190 + HGI48_RS00665 0.42 -0.7 158,190 + HGI48_RS00665 0.42 -1.9 158,191 - HGI48_RS00665 0.42 +0.3 158,191 - HGI48_RS00665 0.42 -1.9 158,191 - HGI48_RS00665 0.42 +0.8 158,191 - HGI48_RS00665 0.42 +0.3 158,191 - HGI48_RS00665 0.42 -0.4 158,191 - HGI48_RS00665 0.42 -1.1 158,191 - HGI48_RS00665 0.42 -1.3 158,191 - HGI48_RS00665 0.42 -1.7 158,191 - HGI48_RS00665 0.42 +0.3 158,191 - HGI48_RS00665 0.42 +1.4 158,395 - +0.7 158,395 - -0.3 158,395 - +0.3 158,471 - HGI48_RS00670 0.20 +0.1 158,471 - HGI48_RS00670 0.20 +1.0 158,473 - HGI48_RS00670 0.20 -0.3 158,818 + +0.0 158,818 + +0.6 158,818 + -0.5 158,818 + +0.3 158,819 - -1.3 158,819 - +0.0 158,819 - -0.7 158,841 + -1.4 158,922 + +0.1 158,922 + +0.1 158,922 + +1.9 158,922 + -1.4 158,922 + +0.1 158,923 - +1.3 158,923 - -1.4 158,923 - -1.0 158,923 - +0.3 158,925 - -1.3 158,925 - -0.5 158,925 - +1.5 158,925 - -0.3 158,940 - -0.0 159,022 - +0.6 159,022 - -1.7 159,065 + HGI48_RS00675 0.14 +0.2 159,151 - HGI48_RS00675 0.26 -1.0 159,151 - +0.3 159,171 - HGI48_RS00675 0.29 -1.5 159,291 + HGI48_RS00675 0.46 +0.2 159,291 + HGI48_RS00675 0.46 -1.3 159,291 + HGI48_RS00675 0.46 -0.3 159,291 + HGI48_RS00675 0.46 -0.1 159,291 + HGI48_RS00675 0.46 -0.1 159,291 + HGI48_RS00675 0.46 +0.1 159,291 + HGI48_RS00675 0.46 +0.1 159,291 + +1.3 159,292 - HGI48_RS00675 0.46 -0.0 159,292 - HGI48_RS00675 0.46 -0.2 159,292 - HGI48_RS00675 0.46 +1.3 159,292 - HGI48_RS00675 0.46 +0.8 159,299 + HGI48_RS00675 0.47 -0.1 159,492 + HGI48_RS00675 0.74 -1.0 159,493 - HGI48_RS00675 0.74 -0.8 159,493 - HGI48_RS00675 0.74 -1.0 159,493 - HGI48_RS00675 0.74 -1.3 159,713 + -0.3 159,714 - -0.9 159,714 - -0.4 159,714 - -0.7 159,714 - -0.5 159,716 - -0.7 159,716 - -1.0 159,729 + -0.3 159,729 + +2.3 159,734 + -0.8 159,734 + +1.3 159,734 + +0.6 159,734 + +0.8 159,734 + -1.5 159,734 + +0.3 159,734 + -2.4 159,734 + -0.1 159,734 + -0.4 159,734 + -1.0 159,734 + -0.6 159,734 + -2.0 159,734 + -2.4 159,735 - -1.8 159,735 - -0.3 159,735 - -1.9 159,735 - -1.9 159,735 - -0.1 159,735 - +0.2 159,735 - +0.9 159,735 - -1.0 159,735 - -1.3 159,735 - -0.5 159,735 - -0.9 159,735 - -1.0 159,735 - -1.3 159,735 - -1.3 159,735 - -3.3 159,801 + -1.9 159,802 - -2.4 159,878 + -0.3 159,878 + HGI48_RS00680 0.13 -1.0 159,878 + HGI48_RS00680 0.13 -0.3 159,888 + HGI48_RS00680 0.15 -3.4 160,005 + HGI48_RS00680 0.33 +1.3 160,006 - HGI48_RS00680 0.33 -2.0 160,006 - HGI48_RS00680 0.33 -0.7 160,006 - HGI48_RS00680 0.33 -2.0 160,088 + HGI48_RS00680 0.46 +0.8 160,312 - HGI48_RS00680 0.81 -1.2 160,432 - -2.2 160,467 + +1.3 160,467 + +1.3 160,468 - +1.7 160,468 - +0.3 160,468 - -0.2 160,468 - -1.2
Or see this region's nucleotide sequence