Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00590

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
140,372	+		HGI48_RS00585	0.70	-0.7
140,373	-		HGI48_RS00585	0.70	-0.3
140,373	-		HGI48_RS00585	0.70	+0.6
140,373	-		HGI48_RS00585	0.70	-0.7
140,377	+		HGI48_RS00585	0.70	-0.7
140,377	+		HGI48_RS00585	0.70	-1.8
140,377	+		HGI48_RS00585	0.70	-0.2
140,377	+		HGI48_RS00585	0.70	-1.3
140,377	+		HGI48_RS00585	0.70	-0.1
140,378	-		HGI48_RS00585	0.70	+1.0
140,410	-		HGI48_RS00585	0.73	-0.7
140,420	+		HGI48_RS00585	0.73	-1.2
140,504	+		HGI48_RS00585	0.80	-0.5
140,504	+		HGI48_RS00585	0.80	-0.2
140,504	+		HGI48_RS00585	0.80	+1.3
140,559	+		HGI48_RS00585	0.84	-0.7
140,560	-		HGI48_RS00585	0.84	-0.5
140,560	-		HGI48_RS00585	0.84	+0.3
140,600	+		HGI48_RS00585	0.87	-0.8
140,600	+		HGI48_RS00585	0.87	+0.6
140,677	+				+0.3
140,678	-				+0.7
140,678	-				-1.3
140,678	-				+1.3
140,681	+				+0.3
140,681	+				-0.2
140,681	+				-2.8
140,681	+				-1.9
140,681	+				+0.8
140,681	+				-1.0
140,682	-				-0.3
140,682	-				-1.7
140,713	+				+0.9
140,719	-				+0.7
140,741	+				+0.6
140,741	+				+0.3
140,741	+				-0.4
140,742	-				-1.3
140,742	-				+1.0
140,742	-				+0.3
140,747	+				-0.7
140,748	-				+2.0
140,748	-				+0.3
140,748	-				+0.4
140,748	-				-0.3
140,748	-				-0.7
140,763	-				-2.2
140,801	-				-0.5
140,807	-				-0.7
140,807	-				+0.3
140,810	+				+0.3
140,811	-				-2.2
140,811	-				-1.0
140,834	+				+0.4
140,834	+				-0.9
140,835	-				-0.7
140,849	+				+1.6
140,849	+				-0.2
140,849	+				-0.0
140,849	+				-0.3
140,849	+				+1.3
140,850	-				-0.6
140,850	-				-1.0
140,850	-				+0.9
140,850	-				-0.0
140,850	-				-0.5
140,854	+				+1.9
140,854	+				+0.2
140,855	-				-0.3
140,855	-				-1.0
140,859	-				-0.3
140,859	-				+1.3
140,930	+				-0.4
140,930	+				+1.3
140,931	-				-1.9
140,931	-				+0.1
140,941	+				+0.0
140,941	+				+0.3
140,941	+				-1.5
140,941	+				-0.0
140,952	+				-0.3
140,952	+				-1.3
140,960	+				+0.9
140,960	+				+2.3
140,960	+				-1.0
140,960	+				-1.9
140,960	+				-0.0
140,960	+				-0.8
140,960	+				-1.0
140,960	+				-1.3
140,960	+				+0.3
140,961	-				+0.2
140,961	-				-0.3
140,961	-				+3.0
140,961	-				-0.2
140,961	-				-1.0
140,961	-				-0.8
140,961	-				-0.3
140,961	-				-1.3
140,986	+				-0.2
140,986	+				-1.7
140,986	+				-0.7
141,029	-				-0.9
141,033	+				-2.6
141,034	-				-0.3
141,099	-				-0.7
141,099	-				-1.8
141,099	-				-1.3
141,113	-				-0.7
141,113	-				-0.9
141,182	+				-1.0
141,358	+		HGI48_RS00590	0.13	-1.0
141,358	+		HGI48_RS00590	0.13	-1.7
141,358	+		HGI48_RS00590	0.13	-0.7
141,358	+				-0.3
141,359	-		HGI48_RS00590	0.14	-1.3
141,364	+		HGI48_RS00590	0.15	-1.0
141,364	+		HGI48_RS00590	0.15	-1.9
141,384	+		HGI48_RS00590	0.19	+1.9
141,384	+				-0.3
141,385	-		HGI48_RS00590	0.20	-2.8
141,392	+				+0.7
141,393	-		HGI48_RS00590	0.21	-0.3
141,393	-		HGI48_RS00590	0.21	-2.3
141,393	-		HGI48_RS00590	0.21	-0.7
141,393	-				+0.3
141,450	+		HGI48_RS00590	0.34	-1.7
141,451	-		HGI48_RS00590	0.35	-1.0
141,451	-		HGI48_RS00590	0.35	-0.3
141,451	-				-0.3
141,451	-		HGI48_RS00590	0.35	-0.8
141,459	+		HGI48_RS00590	0.37	-1.5
141,459	+		HGI48_RS00590	0.37	-0.5
141,459	+		HGI48_RS00590	0.37	+1.3
141,460	-		HGI48_RS00590	0.37	+0.5
141,478	+		HGI48_RS00590	0.41	-0.2
141,482	+		HGI48_RS00590	0.42	-0.4
141,482	+				-0.3
141,482	+		HGI48_RS00590	0.42	-0.2
141,482	+				+1.3
141,483	-		HGI48_RS00590	0.42	+2.1
141,483	-		HGI48_RS00590	0.42	-0.0
141,483	-		HGI48_RS00590	0.42	+0.7
141,483	-		HGI48_RS00590	0.42	-0.6
141,483	-		HGI48_RS00590	0.42	+0.3
141,483	-				+1.3
141,483	-		HGI48_RS00590	0.42	-1.3
141,483	-		HGI48_RS00590	0.42	-0.0
141,483	-		HGI48_RS00590	0.42	-0.3
141,496	+		HGI48_RS00590	0.45	-0.5
141,535	+		HGI48_RS00590	0.54	-1.2
141,535	+		HGI48_RS00590	0.54	-0.3
141,536	-		HGI48_RS00590	0.54	+2.4
141,536	-		HGI48_RS00590	0.54	-2.0
141,558	+		HGI48_RS00590	0.59	+0.2
141,558	+		HGI48_RS00590	0.59	+0.2
141,558	+		HGI48_RS00590	0.59	-0.7
141,559	-		HGI48_RS00590	0.59	+0.1
141,559	-		HGI48_RS00590	0.59	-0.7
141,562	+		HGI48_RS00590	0.60	+1.0
141,562	+		HGI48_RS00590	0.60	+0.9
141,563	-		HGI48_RS00590	0.60	-1.3
141,563	-		HGI48_RS00590	0.60	+1.7
141,575	-				+0.3
141,603	+		HGI48_RS00590	0.69	-1.3
141,604	-		HGI48_RS00590	0.70	-0.7
141,604	-		HGI48_RS00590	0.70	-1.3
141,682	+		HGI48_RS00590	0.87	-0.7
141,682	+		HGI48_RS00590	0.87	+0.1
141,682	+		HGI48_RS00590	0.87	-0.6
141,682	+		HGI48_RS00590	0.87	-0.7
141,683	-		HGI48_RS00590	0.88	+0.3
141,683	-		HGI48_RS00590	0.88	+0.3
141,704	+				-0.3
141,704	+				-2.0
141,704	+				-0.7
141,704	+				-1.7
141,704	+				-0.4
141,704	+				-0.1
141,704	+				+0.3
141,705	-				+0.3
141,705	-				-0.3
141,734	+				-2.1
141,734	+				+1.7
141,734	+				+0.2
141,734	+				+0.9
141,735	-				-3.7
141,735	-				-1.9
141,809	+				+0.3
141,809	+				+0.7
141,809	+				+0.8
141,809	+				-1.0
141,809	+				+1.3
141,809	+				-0.5
141,810	-				+0.5
141,810	-				-1.9
141,810	-				-0.6
141,810	-				-0.4
141,810	-				-2.9
141,810	-				+0.6
141,811	+				-0.1
141,811	+				+0.8
141,811	+				-2.0
141,811	+				+0.5
141,812	-				+2.0
141,812	-				+0.3
141,812	-				-0.6
141,812	-				-0.3
141,812	-				-0.3
141,812	-				-1.3
141,812	-				+1.5
141,812	-				-0.7
141,812	-				-0.7
141,812	-				-0.5
141,848	+				+0.7
141,851	+				-0.3
141,877	+				-0.3
141,877	+				-1.3
141,877	+				-1.5
141,877	+				-0.4
141,877	+				-2.0
141,878	-				-1.2
141,878	-				-0.3
141,878	-				+1.3
141,878	-				-1.9
141,878	-				-0.7
141,878	-				-1.5
141,881	-				+2.1
141,903	-				-0.7
141,903	-				+0.1
141,962	-		HGI48_RS00595	0.13	-0.9
141,962	-		HGI48_RS00595	0.13	+0.6
141,991	+		HGI48_RS00595	0.16	-0.3
142,133	+		HGI48_RS00595	0.35	-1.5
142,135	+		HGI48_RS00595	0.35	+1.0
142,135	+		HGI48_RS00595	0.35	-1.3
142,136	-		HGI48_RS00595	0.35	+0.3
142,136	-		HGI48_RS00595	0.35	-0.1
142,154	+		HGI48_RS00595	0.38	-1.0
142,155	-		HGI48_RS00595	0.38	-2.0
142,155	-		HGI48_RS00595	0.38	-0.3
142,232	-		HGI48_RS00595	0.48	+0.7
142,241	-		HGI48_RS00595	0.49	-1.7
142,286	+				-0.3
142,286	+		HGI48_RS00595	0.55	-0.0
142,286	+		HGI48_RS00595	0.55	+0.5
142,287	-		HGI48_RS00595	0.55	-1.5
142,287	-		HGI48_RS00595	0.55	+1.0
142,306	+		HGI48_RS00595	0.58	-1.7
142,343	+		HGI48_RS00595	0.62	-0.3
142,343	+				+1.7
142,344	-				-0.3
142,344	-		HGI48_RS00595	0.62	+0.1
142,344	-				-0.3
142,344	-		HGI48_RS00595	0.62	-1.1
142,344	-		HGI48_RS00595	0.62	-1.4
142,344	-		HGI48_RS00595	0.62	-1.0
142,344	-		HGI48_RS00595	0.62	+0.5
142,397	+		HGI48_RS00595	0.69	-0.2
142,397	+				+1.3
142,398	-		HGI48_RS00595	0.70	+1.6
142,398	-		HGI48_RS00595	0.70	-0.7
142,426	+		HGI48_RS00595	0.73	-0.3
142,426	+		HGI48_RS00595	0.73	-1.3
142,427	-		HGI48_RS00595	0.73	-0.7
142,427	-		HGI48_RS00595	0.73	+0.6
142,427	-		HGI48_RS00595	0.73	-0.3
142,430	+		HGI48_RS00595	0.74	-0.1
142,430	+		HGI48_RS00595	0.74	+0.7
142,430	+		HGI48_RS00595	0.74	-0.7
142,431	-		HGI48_RS00595	0.74	-0.6
142,431	-		HGI48_RS00595	0.74	-1.9
142,452	-		HGI48_RS00595	0.77	-0.3
142,496	+		HGI48_RS00595	0.82	-1.0
142,674	+				-0.3
142,674	+				-0.7
142,674	+				+1.0
142,674	+				-0.3
142,674	+				-1.0
142,675	-				+0.6
142,675	-				+0.5
142,675	-				+0.0
142,675	-				+0.4
142,675	-				+0.3
142,675	-				-0.3
142,678	+				-0.0
142,678	+				-1.0
142,678	+				-0.6
142,678	+				+1.6
142,679	-				-1.9
142,679	-				+0.3
142,679	-				-0.3
142,689	+				+0.8
142,690	-				-1.5