Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00580

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
136,898	+		HGI48_RS00570	0.81	-1.6
136,898	+		HGI48_RS00570	0.81	-0.6
136,898	+		HGI48_RS00570	0.81	-0.7
136,899	-		HGI48_RS00570	0.81	-0.6
136,899	-		HGI48_RS00570	0.81	-1.6
136,899	-		HGI48_RS00570	0.81	+1.0
136,899	-		HGI48_RS00570	0.81	+0.8
136,899	-		HGI48_RS00570	0.81	+0.7
136,942	-		HGI48_RS00570	0.87	-0.1
136,958	+				+2.3
137,008	+				-1.6
137,009	-				+0.9
137,176	-		HGI48_RS00575	0.17	-1.6
137,203	-		HGI48_RS00575	0.21	-1.0
137,203	-		HGI48_RS00575	0.21	-2.3
137,337	+				-0.3
137,337	+		HGI48_RS00575	0.39	-0.6
137,337	+		HGI48_RS00575	0.39	-0.0
137,338	-		HGI48_RS00575	0.39	-0.0
137,513	+		HGI48_RS00575	0.62	-0.3
137,513	+		HGI48_RS00575	0.62	-0.9
137,513	+		HGI48_RS00575	0.62	-0.3
137,513	+		HGI48_RS00575	0.62	-1.3
137,513	+				+1.3
137,514	-		HGI48_RS00575	0.63	-0.4
137,514	-		HGI48_RS00575	0.63	-0.4
137,514	-		HGI48_RS00575	0.63	-1.0
137,514	-		HGI48_RS00575	0.63	+0.3
137,514	-				+0.3
137,601	+		HGI48_RS00575	0.74	-1.6
137,602	-		HGI48_RS00575	0.74	+0.5
137,602	-		HGI48_RS00575	0.74	-1.0
137,611	+		HGI48_RS00575	0.76	-0.5
137,611	+		HGI48_RS00575	0.76	-0.0
137,611	+		HGI48_RS00575	0.76	-2.9
137,611	+				+2.3
137,611	+		HGI48_RS00575	0.76	-0.7
137,611	+		HGI48_RS00575	0.76	-0.0
137,611	+		HGI48_RS00575	0.76	+0.1
137,611	+		HGI48_RS00575	0.76	-1.1
137,611	+				+0.3
137,611	+		HGI48_RS00575	0.76	-0.7
137,611	+		HGI48_RS00575	0.76	+0.1
137,611	+		HGI48_RS00575	0.76	-1.3
137,611	+		HGI48_RS00575	0.76	-1.9
137,611	+		HGI48_RS00575	0.76	-2.2
137,611	+		HGI48_RS00575	0.76	+0.9
137,611	+		HGI48_RS00575	0.76	-1.0
137,611	+		HGI48_RS00575	0.76	-1.0
137,612	-				+0.7
137,612	-		HGI48_RS00575	0.76	-0.8
137,612	-		HGI48_RS00575	0.76	-0.7
137,612	-		HGI48_RS00575	0.76	-0.6
137,612	-				+3.6
137,612	-		HGI48_RS00575	0.76	+1.0
137,612	-		HGI48_RS00575	0.76	-0.7
137,612	-		HGI48_RS00575	0.76	-0.5
137,612	-		HGI48_RS00575	0.76	+0.8
137,612	-		HGI48_RS00575	0.76	-1.6
137,612	-		HGI48_RS00575	0.76	-0.1
137,612	-		HGI48_RS00575	0.76	-0.0
137,612	-		HGI48_RS00575	0.76	-2.2
137,612	-		HGI48_RS00575	0.76	-1.4
137,612	-		HGI48_RS00575	0.76	+0.8
137,612	-		HGI48_RS00575	0.76	-0.4
137,612	-				+0.3
137,612	-		HGI48_RS00575	0.76	+0.7
137,612	-		HGI48_RS00575	0.76	-0.8
137,613	+		HGI48_RS00575	0.76	+0.9
137,613	+		HGI48_RS00575	0.76	-1.0
137,613	+		HGI48_RS00575	0.76	+1.5
137,613	+		HGI48_RS00575	0.76	-1.3
137,613	+		HGI48_RS00575	0.76	+0.3
137,614	-		HGI48_RS00575	0.76	+0.2
137,614	-		HGI48_RS00575	0.76	-1.5
137,614	-		HGI48_RS00575	0.76	-2.5
137,614	-		HGI48_RS00575	0.76	+2.0
137,614	-				+0.7
137,614	-		HGI48_RS00575	0.76	+1.6
137,616	+		HGI48_RS00575	0.76	+0.5
137,617	-				+0.3
137,617	-		HGI48_RS00575	0.77	+0.3
137,617	-		HGI48_RS00575	0.77	+0.2
137,617	-		HGI48_RS00575	0.77	-0.7
137,617	-		HGI48_RS00575	0.77	+0.7
137,617	-		HGI48_RS00575	0.77	+0.9
137,628	+		HGI48_RS00575	0.78	-1.6
137,756	-				+0.3
137,762	+				-0.7
137,762	+				+0.3
137,762	+				+0.7
137,762	+				-0.3
137,763	-				-0.8
137,763	-				-0.7
137,763	-				-0.7
137,763	-				-0.5
137,794	+				-0.3
137,794	+				-0.5
137,794	+				+0.3
137,794	+				-1.0
137,794	+				-0.0
137,794	+				-0.2
137,794	+				-0.1
137,794	+				-2.4
137,794	+				+0.3
137,794	+				+0.6
137,794	+				-1.4
137,794	+				-0.3
137,795	-				+2.2
137,795	-				-1.7
137,795	-				-0.0
137,795	-				-0.4
137,795	-				+0.7
137,795	-				+0.7
137,795	-				+0.3
137,795	-				+0.7
137,795	-				+0.1
137,795	-				+0.6
137,795	-				-1.3
137,795	-				+1.3
138,032	+		HGI48_RS00580	0.16	-0.5
138,032	+		HGI48_RS00580	0.16	-1.0
138,033	-		HGI48_RS00580	0.16	+0.5
138,033	-		HGI48_RS00580	0.16	-2.4
138,171	+		HGI48_RS00580	0.25	+0.6
138,171	+		HGI48_RS00580	0.25	-0.4
138,171	+		HGI48_RS00580	0.25	-0.7
138,255	+		HGI48_RS00580	0.31	-1.7
138,255	+		HGI48_RS00580	0.31	-0.7
138,255	+		HGI48_RS00580	0.31	-0.0
138,255	+		HGI48_RS00580	0.31	+1.3
138,256	-		HGI48_RS00580	0.31	+1.0
138,309	+		HGI48_RS00580	0.35	+1.3
138,309	+		HGI48_RS00580	0.35	-1.0
138,309	+		HGI48_RS00580	0.35	-1.5
138,309	+		HGI48_RS00580	0.35	-0.1
138,309	+		HGI48_RS00580	0.35	-0.2
138,310	-		HGI48_RS00580	0.35	+0.0
138,310	-		HGI48_RS00580	0.35	+0.1
138,310	-		HGI48_RS00580	0.35	-0.7
138,464	+		HGI48_RS00580	0.45	+0.2
138,465	-		HGI48_RS00580	0.45	-1.9
138,550	+		HGI48_RS00580	0.50	-1.8
138,550	+		HGI48_RS00580	0.50	-1.0
138,550	+		HGI48_RS00580	0.50	-0.5
138,551	-		HGI48_RS00580	0.51	+0.6
138,675	+		HGI48_RS00580	0.59	-0.3
138,675	+		HGI48_RS00580	0.59	-0.8
138,676	-		HGI48_RS00580	0.59	-0.0
138,676	-		HGI48_RS00580	0.59	-0.3
138,684	+				+0.3
138,684	+		HGI48_RS00580	0.59	-1.0
138,684	+		HGI48_RS00580	0.59	+1.3
138,684	+		HGI48_RS00580	0.59	-1.0
138,684	+		HGI48_RS00580	0.59	+1.3
138,684	+		HGI48_RS00580	0.59	-1.5
138,684	+		HGI48_RS00580	0.59	-0.6
138,685	-		HGI48_RS00580	0.59	+0.1
138,685	-		HGI48_RS00580	0.59	-0.4
138,685	-		HGI48_RS00580	0.59	-0.7
138,685	-		HGI48_RS00580	0.59	-0.7
138,706	+		HGI48_RS00580	0.61	-1.1
138,706	+		HGI48_RS00580	0.61	-0.7
138,707	-				-0.3
138,707	-		HGI48_RS00580	0.61	-1.5
138,707	-		HGI48_RS00580	0.61	+0.3
138,707	-		HGI48_RS00580	0.61	-1.7
138,707	-		HGI48_RS00580	0.61	-0.7
138,753	+		HGI48_RS00580	0.64	-1.3
138,753	+				+1.3
138,834	+		HGI48_RS00580	0.69	-1.4
138,834	+		HGI48_RS00580	0.69	+0.4
139,246	-				-1.0
139,313	-				+2.3
139,313	-				+1.3
139,313	-				-0.4
139,370	+				+0.3
139,375	+				+0.1
139,375	+				-1.5
139,375	+				+0.9
139,375	+				-0.0
139,376	-				+0.3
139,376	-				-1.9
139,376	-				+1.3
139,376	-				-0.9
139,376	-				-1.6
139,405	+				-0.3
139,406	-				-0.2
139,406	-				+2.0
139,406	-				-1.3
139,427	-				-1.0
139,442	+				+0.3
139,443	-				+2.3
139,443	-				+0.3
139,444	+				-1.5
139,444	+				-1.3
139,444	+				-1.3
139,444	+				-0.0
139,444	+				-1.2
139,444	+				+1.2
139,444	+				-0.7
139,444	+				-1.1
139,445	-				-1.2
139,445	-				-0.3
139,445	-				+0.3
139,445	-				+1.5
139,445	-				-0.3
139,445	-				-0.5
139,445	-				+0.0
139,445	-				-0.3
139,445	-				-1.0
139,490	+				+2.6
139,490	+				-2.0
139,490	+				-1.0
139,490	+				-0.3
139,490	+				+0.3
139,490	+				-1.7
139,491	-				+0.1
139,491	-				-0.3
139,515	+				-0.5
139,515	+				-1.9
139,515	+				-0.3
139,516	-				+0.5
139,516	-				-0.7
139,516	-				-0.7
139,595	+		HGI48_RS00585	0.11	+1.3
139,595	+		HGI48_RS00585	0.11	-1.3
139,595	+		HGI48_RS00585	0.11	-0.7
139,595	+		HGI48_RS00585	0.11	+1.0
139,595	+		HGI48_RS00585	0.11	+0.5
139,595	+		HGI48_RS00585	0.11	+0.3
139,595	+		HGI48_RS00585	0.11	-1.2
139,595	+		HGI48_RS00585	0.11	-2.0
139,596	-		HGI48_RS00585	0.11	-0.6
139,596	-		HGI48_RS00585	0.11	+0.6
139,596	-		HGI48_RS00585	0.11	-0.2
139,662	+		HGI48_RS00585	0.16	+2.0
139,724	-				+0.7
139,770	+		HGI48_RS00585	0.24	+0.3
139,770	+		HGI48_RS00585	0.24	+0.3
139,770	+				-0.3
139,771	-		HGI48_RS00585	0.25	+0.0
139,771	-		HGI48_RS00585	0.25	+0.3
139,771	-		HGI48_RS00585	0.25	+0.3
139,771	-		HGI48_RS00585	0.25	-0.8
139,771	-		HGI48_RS00585	0.25	-0.0
139,771	-		HGI48_RS00585	0.25	-0.7
139,824	-		HGI48_RS00585	0.29	+0.6
139,908	+		HGI48_RS00585	0.35	-1.7
139,966	+		HGI48_RS00585	0.39	-1.0
139,966	+		HGI48_RS00585	0.39	-1.6
139,967	-		HGI48_RS00585	0.39	+0.1
139,970	+		HGI48_RS00585	0.40	-0.3
139,970	+		HGI48_RS00585	0.40	-1.6
139,970	+		HGI48_RS00585	0.40	+0.2
139,970	+		HGI48_RS00585	0.40	-0.9
139,971	-				-0.3
139,971	-		HGI48_RS00585	0.40	-0.7
139,971	-		HGI48_RS00585	0.40	-0.3
139,971	-				-0.3
139,971	-		HGI48_RS00585	0.40	+1.3
140,002	+		HGI48_RS00585	0.42	-1.0
140,002	+		HGI48_RS00585	0.42	-0.3
140,003	-		HGI48_RS00585	0.42	-0.2
140,003	-		HGI48_RS00585	0.42	+0.6
140,003	-		HGI48_RS00585	0.42	+1.1
140,003	-		HGI48_RS00585	0.42	-0.2
140,035	+		HGI48_RS00585	0.44	-0.2
140,112	+		HGI48_RS00585	0.50	+0.3
140,112	+		HGI48_RS00585	0.50	-1.9
140,112	+		HGI48_RS00585	0.50	-1.6
140,112	+		HGI48_RS00585	0.50	-0.6
140,112	+				+1.9
140,112	+		HGI48_RS00585	0.50	+0.1
140,113	-		HGI48_RS00585	0.50	+2.3
140,133	-		HGI48_RS00585	0.52	-2.0
140,133	-		HGI48_RS00585	0.52	-0.1
140,144	+		HGI48_RS00585	0.53	-1.9
140,145	-		HGI48_RS00585	0.53	-0.1
140,184	+		HGI48_RS00585	0.56	+1.0
140,184	+		HGI48_RS00585	0.56	-0.0
140,185	-		HGI48_RS00585	0.56	+0.8
140,185	-		HGI48_RS00585	0.56	-1.0
140,185	-		HGI48_RS00585	0.56	-0.0
140,291	+		HGI48_RS00585	0.64	+1.0
140,294	+		HGI48_RS00585	0.64	-0.0
140,295	-		HGI48_RS00585	0.64	+1.0