Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00560 and HGI48_RS00565 overlap by 4 nucleotides HGI48_RS00565 and HGI48_RS00570 are separated by 0 nucleotides HGI48_RS00570 and HGI48_RS00575 overlap by 4 nucleotides HGI48_RS00575 and HGI48_RS00580 overlap by 4 nucleotides
HGI48_RS00560: HGI48_RS00560 - ABC transporter permease, at 134,313 to 135,323
_RS00560
HGI48_RS00565: HGI48_RS00565 - ABC transporter permease, at 135,320 to 136,222
_RS00565
HGI48_RS00570: HGI48_RS00570 - ABC transporter ATP-binding protein, at 136,223 to 137,053
_RS00570
HGI48_RS00575: HGI48_RS00575 - ABC transporter ATP-binding protein, at 137,050 to 137,790
_RS00575
HGI48_RS00580: HGI48_RS00580 - beta-lactamase family protein, at 137,787 to 139,298
_RS00580
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 135.239 kb on + strand at 135.261 kb on + strand at 135.261 kb on + strand at 135.261 kb on + strand at 135.261 kb on + strand at 135.262 kb on - strand at 135.262 kb on - strand at 135.294 kb on + strand at 135.295 kb on - strand at 135.317 kb on - strand at 135.317 kb on - strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.329 kb on + strand at 135.330 kb on - strand at 135.330 kb on - strand at 135.330 kb on - strand at 135.330 kb on - strand at 135.330 kb on - strand at 135.609 kb on - strand, within HGI48_RS00565 at 135.619 kb on + strand, within HGI48_RS00565 at 135.619 kb on + strand, within HGI48_RS00565 at 135.620 kb on - strand, within HGI48_RS00565 at 135.620 kb on - strand, within HGI48_RS00565 at 135.620 kb on - strand, within HGI48_RS00565 at 135.622 kb on + strand, within HGI48_RS00565 at 135.623 kb on - strand, within HGI48_RS00565 at 135.623 kb on - strand, within HGI48_RS00565 at 135.623 kb on - strand, within HGI48_RS00565 at 135.715 kb on + strand at 135.848 kb on + strand, within HGI48_RS00565 at 135.898 kb on + strand, within HGI48_RS00565 at 136.157 kb on - strand at 136.157 kb on - strand at 136.220 kb on + strand at 136.220 kb on + strand at 136.220 kb on + strand at 136.221 kb on - strand at 136.221 kb on - strand at 136.221 kb on - strand at 136.221 kb on - strand at 136.514 kb on + strand, within HGI48_RS00570 at 136.629 kb on + strand, within HGI48_RS00570 at 136.630 kb on - strand, within HGI48_RS00570 at 136.630 kb on - strand, within HGI48_RS00570 at 136.898 kb on + strand, within HGI48_RS00570 at 136.898 kb on + strand, within HGI48_RS00570 at 136.898 kb on + strand, within HGI48_RS00570 at 136.899 kb on - strand, within HGI48_RS00570 at 136.899 kb on - strand, within HGI48_RS00570 at 136.899 kb on - strand, within HGI48_RS00570 at 136.899 kb on - strand, within HGI48_RS00570 at 136.899 kb on - strand, within HGI48_RS00570 at 136.942 kb on - strand, within HGI48_RS00570 at 136.958 kb on + strand at 137.008 kb on + strand at 137.009 kb on - strand at 137.176 kb on - strand, within HGI48_RS00575 at 137.203 kb on - strand, within HGI48_RS00575 at 137.203 kb on - strand, within HGI48_RS00575 at 137.337 kb on + strand at 137.337 kb on + strand, within HGI48_RS00575 at 137.337 kb on + strand, within HGI48_RS00575 at 137.338 kb on - strand, within HGI48_RS00575 at 137.513 kb on + strand, within HGI48_RS00575 at 137.513 kb on + strand, within HGI48_RS00575 at 137.513 kb on + strand, within HGI48_RS00575 at 137.513 kb on + strand, within HGI48_RS00575 at 137.513 kb on + strand at 137.514 kb on - strand, within HGI48_RS00575 at 137.514 kb on - strand, within HGI48_RS00575 at 137.514 kb on - strand, within HGI48_RS00575 at 137.514 kb on - strand, within HGI48_RS00575 at 137.514 kb on - strand at 137.601 kb on + strand, within HGI48_RS00575 at 137.602 kb on - strand, within HGI48_RS00575 at 137.602 kb on - strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.611 kb on + strand, within HGI48_RS00575 at 137.612 kb on - strand at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand at 137.612 kb on - strand, within HGI48_RS00575 at 137.612 kb on - strand, within HGI48_RS00575 at 137.613 kb on + strand, within HGI48_RS00575 at 137.613 kb on + strand, within HGI48_RS00575 at 137.613 kb on + strand, within HGI48_RS00575 at 137.613 kb on + strand, within HGI48_RS00575 at 137.613 kb on + strand, within HGI48_RS00575 at 137.614 kb on - strand, within HGI48_RS00575 at 137.614 kb on - strand, within HGI48_RS00575 at 137.614 kb on - strand, within HGI48_RS00575 at 137.614 kb on - strand, within HGI48_RS00575 at 137.614 kb on - strand at 137.614 kb on - strand, within HGI48_RS00575 at 137.616 kb on + strand, within HGI48_RS00575 at 137.617 kb on - strand at 137.617 kb on - strand, within HGI48_RS00575 at 137.617 kb on - strand, within HGI48_RS00575 at 137.617 kb on - strand, within HGI48_RS00575 at 137.617 kb on - strand, within HGI48_RS00575 at 137.617 kb on - strand, within HGI48_RS00575 at 137.628 kb on + strand, within HGI48_RS00575 at 137.756 kb on - strand at 137.762 kb on + strand at 137.762 kb on + strand at 137.762 kb on + strand at 137.762 kb on + strand at 137.763 kb on - strand at 137.763 kb on - strand at 137.763 kb on - strand at 137.763 kb on - strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.794 kb on + strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 137.795 kb on - strand at 138.032 kb on + strand, within HGI48_RS00580 at 138.032 kb on + strand, within HGI48_RS00580 at 138.033 kb on - strand, within HGI48_RS00580 at 138.033 kb on - strand, within HGI48_RS00580
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 135,239 + -1.3 135,261 + -1.5 135,261 + +0.8 135,261 + +0.1 135,261 + +1.6 135,262 - -0.7 135,262 - +0.1 135,294 + +0.5 135,295 - -1.5 135,317 - -0.5 135,317 - +0.9 135,329 + +0.6 135,329 + +0.1 135,329 + -0.4 135,329 + -1.7 135,329 + -0.1 135,329 + -1.5 135,329 + -2.0 135,330 - +0.3 135,330 - +0.4 135,330 - +0.3 135,330 - -0.1 135,330 - +2.3 135,609 - HGI48_RS00565 0.32 -1.0 135,619 + HGI48_RS00565 0.33 -0.0 135,619 + HGI48_RS00565 0.33 +1.3 135,620 - HGI48_RS00565 0.33 -0.7 135,620 - HGI48_RS00565 0.33 -2.4 135,620 - HGI48_RS00565 0.33 +0.1 135,622 + HGI48_RS00565 0.33 -0.5 135,623 - HGI48_RS00565 0.34 -0.3 135,623 - HGI48_RS00565 0.34 -0.5 135,623 - HGI48_RS00565 0.34 +0.9 135,715 + +5.6 135,848 + HGI48_RS00565 0.58 +0.2 135,898 + HGI48_RS00565 0.64 -0.6 136,157 - -0.6 136,157 - +0.4 136,220 + +1.7 136,220 + -0.1 136,220 + +0.3 136,221 - +0.3 136,221 - -1.0 136,221 - -0.1 136,221 - -0.8 136,514 + HGI48_RS00570 0.35 -0.7 136,629 + HGI48_RS00570 0.49 +0.8 136,630 - HGI48_RS00570 0.49 +0.5 136,630 - HGI48_RS00570 0.49 +0.3 136,898 + HGI48_RS00570 0.81 -1.6 136,898 + HGI48_RS00570 0.81 -0.6 136,898 + HGI48_RS00570 0.81 -0.7 136,899 - HGI48_RS00570 0.81 -0.6 136,899 - HGI48_RS00570 0.81 -1.6 136,899 - HGI48_RS00570 0.81 +1.0 136,899 - HGI48_RS00570 0.81 +0.8 136,899 - HGI48_RS00570 0.81 +0.7 136,942 - HGI48_RS00570 0.87 -0.1 136,958 + +2.3 137,008 + -1.6 137,009 - +0.9 137,176 - HGI48_RS00575 0.17 -1.6 137,203 - HGI48_RS00575 0.21 -1.0 137,203 - HGI48_RS00575 0.21 -2.3 137,337 + -0.3 137,337 + HGI48_RS00575 0.39 -0.6 137,337 + HGI48_RS00575 0.39 -0.0 137,338 - HGI48_RS00575 0.39 -0.0 137,513 + HGI48_RS00575 0.62 -0.3 137,513 + HGI48_RS00575 0.62 -0.9 137,513 + HGI48_RS00575 0.62 -0.3 137,513 + HGI48_RS00575 0.62 -1.3 137,513 + +1.3 137,514 - HGI48_RS00575 0.63 -0.4 137,514 - HGI48_RS00575 0.63 -0.4 137,514 - HGI48_RS00575 0.63 -1.0 137,514 - HGI48_RS00575 0.63 +0.3 137,514 - +0.3 137,601 + HGI48_RS00575 0.74 -1.6 137,602 - HGI48_RS00575 0.74 +0.5 137,602 - HGI48_RS00575 0.74 -1.0 137,611 + HGI48_RS00575 0.76 -0.5 137,611 + HGI48_RS00575 0.76 -0.0 137,611 + HGI48_RS00575 0.76 -2.9 137,611 + +2.3 137,611 + HGI48_RS00575 0.76 -0.7 137,611 + HGI48_RS00575 0.76 -0.0 137,611 + HGI48_RS00575 0.76 +0.1 137,611 + HGI48_RS00575 0.76 -1.1 137,611 + +0.3 137,611 + HGI48_RS00575 0.76 -0.7 137,611 + HGI48_RS00575 0.76 +0.1 137,611 + HGI48_RS00575 0.76 -1.3 137,611 + HGI48_RS00575 0.76 -1.9 137,611 + HGI48_RS00575 0.76 -2.2 137,611 + HGI48_RS00575 0.76 +0.9 137,611 + HGI48_RS00575 0.76 -1.0 137,611 + HGI48_RS00575 0.76 -1.0 137,612 - +0.7 137,612 - HGI48_RS00575 0.76 -0.8 137,612 - HGI48_RS00575 0.76 -0.7 137,612 - HGI48_RS00575 0.76 -0.6 137,612 - +3.6 137,612 - HGI48_RS00575 0.76 +1.0 137,612 - HGI48_RS00575 0.76 -0.7 137,612 - HGI48_RS00575 0.76 -0.5 137,612 - HGI48_RS00575 0.76 +0.8 137,612 - HGI48_RS00575 0.76 -1.6 137,612 - HGI48_RS00575 0.76 -0.1 137,612 - HGI48_RS00575 0.76 -0.0 137,612 - HGI48_RS00575 0.76 -2.2 137,612 - HGI48_RS00575 0.76 -1.4 137,612 - HGI48_RS00575 0.76 +0.8 137,612 - HGI48_RS00575 0.76 -0.4 137,612 - +0.3 137,612 - HGI48_RS00575 0.76 +0.7 137,612 - HGI48_RS00575 0.76 -0.8 137,613 + HGI48_RS00575 0.76 +0.9 137,613 + HGI48_RS00575 0.76 -1.0 137,613 + HGI48_RS00575 0.76 +1.5 137,613 + HGI48_RS00575 0.76 -1.3 137,613 + HGI48_RS00575 0.76 +0.3 137,614 - HGI48_RS00575 0.76 +0.2 137,614 - HGI48_RS00575 0.76 -1.5 137,614 - HGI48_RS00575 0.76 -2.5 137,614 - HGI48_RS00575 0.76 +2.0 137,614 - +0.7 137,614 - HGI48_RS00575 0.76 +1.6 137,616 + HGI48_RS00575 0.76 +0.5 137,617 - +0.3 137,617 - HGI48_RS00575 0.77 +0.3 137,617 - HGI48_RS00575 0.77 +0.2 137,617 - HGI48_RS00575 0.77 -0.7 137,617 - HGI48_RS00575 0.77 +0.7 137,617 - HGI48_RS00575 0.77 +0.9 137,628 + HGI48_RS00575 0.78 -1.6 137,756 - +0.3 137,762 + -0.7 137,762 + +0.3 137,762 + +0.7 137,762 + -0.3 137,763 - -0.8 137,763 - -0.7 137,763 - -0.7 137,763 - -0.5 137,794 + -0.3 137,794 + -0.5 137,794 + +0.3 137,794 + -1.0 137,794 + -0.0 137,794 + -0.2 137,794 + -0.1 137,794 + -2.4 137,794 + +0.3 137,794 + +0.6 137,794 + -1.4 137,794 + -0.3 137,795 - +2.2 137,795 - -1.7 137,795 - -0.0 137,795 - -0.4 137,795 - +0.7 137,795 - +0.7 137,795 - +0.3 137,795 - +0.7 137,795 - +0.1 137,795 - +0.6 137,795 - -1.3 137,795 - +1.3 138,032 + HGI48_RS00580 0.16 -0.5 138,032 + HGI48_RS00580 0.16 -1.0 138,033 - HGI48_RS00580 0.16 +0.5 138,033 - HGI48_RS00580 0.16 -2.4
Or see this region's nucleotide sequence