Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00435 and HGI48_RS00440 overlap by 13 nucleotides HGI48_RS00440 and HGI48_RS00445 are separated by 281 nucleotides HGI48_RS00445 and HGI48_RS00450 are separated by 55 nucleotides HGI48_RS00450 and HGI48_RS00455 are separated by 43 nucleotides
HGI48_RS00435: HGI48_RS00435 - 4'-phosphopantetheinyl transferase superfamily protein, at 110,198 to 110,968
_RS00435
HGI48_RS00440: HGI48_RS00440 - DUF2807 domain-containing protein, at 110,956 to 111,603
_RS00440
HGI48_RS00445: HGI48_RS00445 - 3-oxoacyl-ACP synthase, at 111,885 to 112,823
_RS00445
HGI48_RS00450: HGI48_RS00450 - hypothetical protein, at 112,879 to 113,676
_RS00450
HGI48_RS00455: HGI48_RS00455 - acyl-CoA/acyl-ACP dehydrogenase, at 113,720 to 114,871
_RS00455
Position (kb) 111
112
113 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 110.970 kb on + strand at 110.970 kb on + strand at 110.971 kb on - strand at 110.971 kb on - strand at 110.971 kb on - strand at 110.971 kb on - strand at 110.971 kb on - strand at 110.974 kb on + strand at 110.974 kb on + strand at 110.974 kb on + strand at 110.974 kb on + strand at 110.975 kb on - strand at 110.975 kb on - strand at 110.975 kb on - strand at 110.975 kb on - strand at 111.001 kb on - strand at 111.001 kb on - strand at 111.076 kb on + strand at 111.077 kb on - strand, within HGI48_RS00440 at 111.077 kb on - strand, within HGI48_RS00440 at 111.088 kb on + strand, within HGI48_RS00440 at 111.088 kb on + strand, within HGI48_RS00440 at 111.301 kb on - strand at 111.301 kb on - strand, within HGI48_RS00440 at 111.304 kb on - strand, within HGI48_RS00440 at 111.318 kb on + strand, within HGI48_RS00440 at 111.319 kb on - strand at 111.319 kb on - strand, within HGI48_RS00440 at 111.511 kb on - strand, within HGI48_RS00440 at 111.654 kb on + strand at 111.654 kb on + strand at 111.655 kb on - strand at 111.743 kb on + strand at 111.743 kb on + strand at 111.743 kb on + strand at 111.744 kb on - strand at 111.744 kb on - strand at 111.744 kb on - strand at 111.744 kb on - strand at 111.744 kb on - strand at 111.795 kb on + strand at 111.795 kb on + strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.796 kb on - strand at 111.798 kb on + strand at 111.798 kb on + strand at 111.798 kb on + strand at 111.798 kb on + strand at 111.799 kb on - strand at 111.799 kb on - strand at 111.799 kb on - strand at 111.799 kb on - strand at 111.799 kb on - strand at 111.799 kb on - strand at 111.804 kb on + strand at 111.805 kb on - strand at 111.809 kb on + strand at 111.809 kb on + strand at 111.809 kb on + strand at 111.809 kb on + strand at 111.809 kb on + strand at 111.809 kb on + strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.810 kb on - strand at 111.848 kb on + strand at 111.849 kb on - strand at 111.862 kb on + strand at 111.862 kb on + strand at 111.862 kb on + strand at 111.863 kb on - strand at 112.021 kb on + strand, within HGI48_RS00445 at 112.021 kb on + strand, within HGI48_RS00445 at 112.022 kb on - strand, within HGI48_RS00445 at 112.104 kb on + strand, within HGI48_RS00445 at 112.126 kb on - strand, within HGI48_RS00445 at 112.160 kb on + strand, within HGI48_RS00445 at 112.160 kb on + strand, within HGI48_RS00445 at 112.160 kb on + strand, within HGI48_RS00445 at 112.161 kb on - strand, within HGI48_RS00445 at 112.167 kb on + strand, within HGI48_RS00445 at 112.168 kb on - strand at 112.201 kb on + strand, within HGI48_RS00445 at 112.201 kb on + strand, within HGI48_RS00445 at 112.201 kb on + strand, within HGI48_RS00445 at 112.202 kb on - strand, within HGI48_RS00445 at 112.202 kb on - strand, within HGI48_RS00445 at 112.202 kb on - strand, within HGI48_RS00445 at 112.202 kb on - strand, within HGI48_RS00445 at 112.202 kb on - strand, within HGI48_RS00445 at 112.266 kb on - strand, within HGI48_RS00445 at 112.267 kb on + strand, within HGI48_RS00445 at 112.267 kb on + strand, within HGI48_RS00445 at 112.267 kb on + strand, within HGI48_RS00445 at 112.267 kb on + strand, within HGI48_RS00445 at 112.268 kb on - strand, within HGI48_RS00445 at 112.268 kb on - strand, within HGI48_RS00445 at 112.278 kb on + strand, within HGI48_RS00445 at 112.278 kb on + strand, within HGI48_RS00445 at 112.278 kb on + strand, within HGI48_RS00445 at 112.340 kb on + strand, within HGI48_RS00445 at 112.340 kb on + strand, within HGI48_RS00445 at 112.354 kb on + strand, within HGI48_RS00445 at 112.355 kb on - strand, within HGI48_RS00445 at 112.589 kb on - strand, within HGI48_RS00445 at 112.589 kb on - strand, within HGI48_RS00445 at 112.589 kb on - strand at 112.589 kb on - strand, within HGI48_RS00445 at 112.589 kb on - strand, within HGI48_RS00445 at 112.592 kb on + strand, within HGI48_RS00445 at 112.592 kb on + strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.593 kb on - strand, within HGI48_RS00445 at 112.635 kb on + strand, within HGI48_RS00445 at 112.635 kb on + strand, within HGI48_RS00445 at 112.636 kb on - strand, within HGI48_RS00445 at 112.636 kb on - strand at 112.636 kb on - strand, within HGI48_RS00445 at 112.763 kb on + strand at 112.763 kb on + strand at 112.764 kb on - strand at 112.764 kb on - strand at 112.764 kb on - strand at 112.767 kb on - strand at 112.827 kb on + strand at 112.828 kb on - strand at 112.828 kb on - strand at 112.828 kb on - strand at 112.828 kb on - strand at 112.828 kb on - strand at 112.863 kb on - strand at 112.881 kb on - strand at 112.940 kb on + strand at 112.940 kb on + strand at 112.958 kb on + strand at 113.104 kb on + strand, within HGI48_RS00450 at 113.104 kb on + strand, within HGI48_RS00450 at 113.104 kb on + strand, within HGI48_RS00450 at 113.105 kb on - strand, within HGI48_RS00450 at 113.105 kb on - strand, within HGI48_RS00450 at 113.105 kb on - strand at 113.105 kb on - strand, within HGI48_RS00450 at 113.105 kb on - strand, within HGI48_RS00450 at 113.411 kb on + strand, within HGI48_RS00450 at 113.411 kb on + strand, within HGI48_RS00450 at 113.411 kb on + strand, within HGI48_RS00450 at 113.412 kb on - strand, within HGI48_RS00450 at 113.412 kb on - strand, within HGI48_RS00450 at 113.412 kb on - strand, within HGI48_RS00450 at 113.412 kb on - strand, within HGI48_RS00450 at 113.412 kb on - strand, within HGI48_RS00450 at 113.412 kb on - strand, within HGI48_RS00450 at 113.412 kb on - strand, within HGI48_RS00450 at 113.412 kb on - strand, within HGI48_RS00450 at 113.412 kb on - strand at 113.502 kb on - strand, within HGI48_RS00450 at 113.627 kb on + strand at 113.627 kb on + strand at 113.627 kb on + strand at 113.628 kb on - strand at 113.628 kb on - strand at 113.639 kb on + strand at 113.639 kb on + strand at 113.639 kb on + strand at 113.642 kb on + strand at 113.642 kb on + strand at 113.642 kb on + strand at 113.643 kb on - strand at 113.643 kb on - strand at 113.708 kb on - strand at 113.726 kb on + strand at 113.726 kb on + strand at 113.726 kb on + strand at 113.726 kb on + strand at 113.726 kb on + strand at 113.727 kb on - strand at 113.727 kb on - strand at 113.757 kb on + strand at 113.758 kb on - strand at 113.805 kb on + strand at 113.805 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 110,970 + -1.6 110,970 + -1.7 110,971 - -1.3 110,971 - -0.5 110,971 - -2.0 110,971 - +0.7 110,971 - -1.7 110,974 + -0.0 110,974 + -2.1 110,974 + -0.1 110,974 + +3.6 110,975 - -0.3 110,975 - -0.3 110,975 - -0.5 110,975 - -1.5 111,001 - +0.5 111,001 - +0.1 111,076 + -0.3 111,077 - HGI48_RS00440 0.19 -0.7 111,077 - HGI48_RS00440 0.19 -0.1 111,088 + HGI48_RS00440 0.20 -1.8 111,088 + HGI48_RS00440 0.20 -0.5 111,301 - +1.3 111,301 - HGI48_RS00440 0.53 -0.0 111,304 - HGI48_RS00440 0.54 -1.0 111,318 + HGI48_RS00440 0.56 -1.7 111,319 - -0.3 111,319 - HGI48_RS00440 0.56 -0.9 111,511 - HGI48_RS00440 0.86 -0.3 111,654 + +0.3 111,654 + -1.3 111,655 - +0.3 111,743 + -1.2 111,743 + -0.8 111,743 + -1.3 111,744 - -0.5 111,744 - -0.4 111,744 - -1.0 111,744 - +1.0 111,744 - +0.1 111,795 + -0.0 111,795 + -1.5 111,796 - -1.3 111,796 - +0.4 111,796 - -1.3 111,796 - +1.1 111,796 - -0.2 111,796 - +0.8 111,796 - -1.5 111,796 - -2.5 111,796 - -0.5 111,798 + -1.0 111,798 + +1.9 111,798 + +0.9 111,798 + +0.3 111,799 - -0.5 111,799 - -0.6 111,799 - -1.9 111,799 - +0.9 111,799 - -0.0 111,799 - -1.3 111,804 + -0.1 111,805 - -0.3 111,809 + +0.1 111,809 + +1.3 111,809 + +0.3 111,809 + +0.0 111,809 + -0.3 111,809 + -1.9 111,810 - -1.3 111,810 - -0.0 111,810 - -0.3 111,810 - -1.3 111,810 - -1.6 111,810 - +0.1 111,810 - +0.5 111,810 - -0.7 111,848 + -2.0 111,849 - +0.1 111,862 + -0.5 111,862 + -1.9 111,862 + -0.5 111,863 - -0.6 112,021 + HGI48_RS00445 0.14 +1.0 112,021 + HGI48_RS00445 0.14 +1.0 112,022 - HGI48_RS00445 0.15 -2.0 112,104 + HGI48_RS00445 0.23 +0.1 112,126 - HGI48_RS00445 0.26 +0.3 112,160 + HGI48_RS00445 0.29 -0.1 112,160 + HGI48_RS00445 0.29 -1.5 112,160 + HGI48_RS00445 0.29 -2.0 112,161 - HGI48_RS00445 0.29 -1.5 112,167 + HGI48_RS00445 0.30 -1.0 112,168 - -0.3 112,201 + HGI48_RS00445 0.34 -0.7 112,201 + HGI48_RS00445 0.34 -1.6 112,201 + HGI48_RS00445 0.34 -1.2 112,202 - HGI48_RS00445 0.34 +0.9 112,202 - HGI48_RS00445 0.34 -0.3 112,202 - HGI48_RS00445 0.34 +0.6 112,202 - HGI48_RS00445 0.34 -0.5 112,202 - HGI48_RS00445 0.34 -2.4 112,266 - HGI48_RS00445 0.41 -1.7 112,267 + HGI48_RS00445 0.41 -1.0 112,267 + HGI48_RS00445 0.41 -0.0 112,267 + HGI48_RS00445 0.41 -0.3 112,267 + HGI48_RS00445 0.41 +1.8 112,268 - HGI48_RS00445 0.41 -1.0 112,268 - HGI48_RS00445 0.41 +0.9 112,278 + HGI48_RS00445 0.42 -1.3 112,278 + HGI48_RS00445 0.42 -1.8 112,278 + HGI48_RS00445 0.42 +0.3 112,340 + HGI48_RS00445 0.48 +0.9 112,340 + HGI48_RS00445 0.48 -1.0 112,354 + HGI48_RS00445 0.50 +0.6 112,355 - HGI48_RS00445 0.50 -0.4 112,589 - HGI48_RS00445 0.75 -0.9 112,589 - HGI48_RS00445 0.75 -2.1 112,589 - -0.3 112,589 - HGI48_RS00445 0.75 -2.0 112,589 - HGI48_RS00445 0.75 -0.7 112,592 + HGI48_RS00445 0.75 -0.4 112,592 + HGI48_RS00445 0.75 -1.0 112,593 - HGI48_RS00445 0.75 -0.6 112,593 - HGI48_RS00445 0.75 -1.0 112,593 - HGI48_RS00445 0.75 -2.2 112,593 - HGI48_RS00445 0.75 +0.6 112,593 - HGI48_RS00445 0.75 +0.6 112,593 - HGI48_RS00445 0.75 -1.0 112,593 - HGI48_RS00445 0.75 +0.3 112,593 - HGI48_RS00445 0.75 -1.0 112,635 + HGI48_RS00445 0.80 +0.5 112,635 + HGI48_RS00445 0.80 +2.1 112,636 - HGI48_RS00445 0.80 +0.9 112,636 - -0.3 112,636 - HGI48_RS00445 0.80 +0.3 112,763 + -0.7 112,763 + +0.3 112,764 - -1.0 112,764 - -0.3 112,764 - +1.1 112,767 - -0.3 112,827 + -0.3 112,828 - -0.3 112,828 - -0.2 112,828 - -0.7 112,828 - -0.3 112,828 - -1.7 112,863 - +0.0 112,881 - -0.6 112,940 + -0.9 112,940 + -3.2 112,958 + +2.3 113,104 + HGI48_RS00450 0.28 +0.1 113,104 + HGI48_RS00450 0.28 -0.7 113,104 + HGI48_RS00450 0.28 -0.6 113,105 - HGI48_RS00450 0.28 +0.9 113,105 - HGI48_RS00450 0.28 -0.7 113,105 - +0.3 113,105 - HGI48_RS00450 0.28 -1.0 113,105 - HGI48_RS00450 0.28 +0.4 113,411 + HGI48_RS00450 0.67 -0.7 113,411 + HGI48_RS00450 0.67 -0.0 113,411 + HGI48_RS00450 0.67 -2.7 113,412 - HGI48_RS00450 0.67 +1.0 113,412 - HGI48_RS00450 0.67 -1.0 113,412 - HGI48_RS00450 0.67 -1.0 113,412 - HGI48_RS00450 0.67 +0.3 113,412 - HGI48_RS00450 0.67 -0.7 113,412 - HGI48_RS00450 0.67 +0.6 113,412 - HGI48_RS00450 0.67 -1.5 113,412 - HGI48_RS00450 0.67 +0.8 113,412 - +0.3 113,502 - HGI48_RS00450 0.78 -0.4 113,627 + +0.9 113,627 + -0.4 113,627 + -0.3 113,628 - -0.7 113,628 - -1.9 113,639 + +0.7 113,639 + -1.0 113,639 + -0.3 113,642 + +0.8 113,642 + -2.4 113,642 + +0.1 113,643 - +0.3 113,643 - -1.5 113,708 - -2.4 113,726 + -0.3 113,726 + +1.3 113,726 + +1.3 113,726 + -0.3 113,726 + +0.8 113,727 - -0.1 113,727 - -1.0 113,757 + +0.7 113,758 - -0.6 113,805 + -1.3 113,805 + -0.0
Or see this region's nucleotide sequence