Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00385 and HGI48_RS00390 are separated by 13 nucleotides HGI48_RS00390 and HGI48_RS00395 overlap by 11 nucleotides HGI48_RS00395 and HGI48_RS00400 are separated by 111 nucleotides HGI48_RS00400 and HGI48_RS00405 overlap by 14 nucleotides
HGI48_RS00385: HGI48_RS00385 - 3-oxoacyl-ACP synthase, at 99,773 to 100,705
_RS00385
HGI48_RS00390: HGI48_RS00390 - acyl carrier protein, at 100,719 to 100,985
_RS00390
HGI48_RS00395: HGI48_RS00395 - VfmB protein, at 100,975 to 101,586
_RS00395
HGI48_RS00400: HGI48_RS00400 - multidrug transporter, at 101,698 to 101,883
_RS00400
HGI48_RS00405: HGI48_RS00405 - alpha/beta hydrolase, at 101,870 to 102,958
_RS00405
Position (kb) 101
102 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 100.699 kb on + strand at 100.700 kb on - strand at 100.700 kb on - strand at 100.703 kb on + strand at 100.703 kb on + strand at 100.703 kb on + strand at 100.703 kb on + strand at 100.703 kb on + strand at 100.703 kb on + strand at 100.704 kb on - strand at 100.704 kb on - strand at 100.704 kb on - strand at 100.704 kb on - strand at 100.704 kb on - strand at 100.704 kb on - strand at 100.704 kb on - strand at 100.724 kb on + strand at 100.724 kb on + strand at 100.724 kb on + strand at 100.724 kb on + strand at 100.724 kb on + strand at 100.724 kb on + strand at 100.724 kb on + strand at 100.724 kb on + strand at 100.724 kb on + strand at 100.724 kb on + strand at 100.725 kb on - strand at 100.725 kb on - strand at 100.730 kb on - strand at 100.730 kb on - strand at 100.732 kb on + strand at 100.733 kb on - strand at 100.733 kb on - strand at 100.866 kb on - strand, within HGI48_RS00390 at 100.866 kb on - strand, within HGI48_RS00390 at 101.077 kb on + strand, within HGI48_RS00395 at 101.077 kb on + strand at 101.077 kb on + strand at 101.077 kb on + strand, within HGI48_RS00395 at 101.077 kb on + strand, within HGI48_RS00395 at 101.077 kb on + strand, within HGI48_RS00395 at 101.078 kb on - strand, within HGI48_RS00395 at 101.078 kb on - strand, within HGI48_RS00395 at 101.395 kb on + strand, within HGI48_RS00395 at 101.461 kb on - strand, within HGI48_RS00395 at 101.461 kb on - strand, within HGI48_RS00395 at 101.511 kb on + strand, within HGI48_RS00395 at 101.511 kb on + strand, within HGI48_RS00395 at 101.527 kb on + strand at 101.527 kb on + strand at 101.528 kb on - strand at 101.528 kb on - strand at 101.546 kb on - strand at 101.546 kb on - strand at 101.546 kb on - strand at 101.589 kb on - strand at 101.812 kb on + strand, within HGI48_RS00400 at 101.837 kb on - strand, within HGI48_RS00400 at 101.879 kb on + strand at 101.879 kb on + strand at 101.879 kb on + strand at 101.879 kb on + strand at 101.879 kb on + strand at 101.879 kb on + strand at 101.879 kb on + strand at 101.879 kb on + strand at 101.879 kb on + strand at 101.880 kb on - strand at 101.880 kb on - strand at 101.880 kb on - strand at 101.881 kb on + strand at 101.881 kb on + strand at 101.882 kb on - strand at 101.882 kb on - strand at 101.882 kb on - strand at 101.924 kb on + strand at 101.924 kb on + strand at 101.930 kb on + strand at 101.930 kb on + strand at 101.930 kb on + strand at 101.930 kb on + strand at 101.930 kb on + strand at 101.930 kb on + strand at 101.930 kb on + strand at 101.931 kb on - strand at 101.931 kb on - strand at 101.931 kb on - strand at 101.931 kb on - strand at 101.931 kb on - strand at 101.931 kb on - strand at 101.931 kb on - strand at 101.931 kb on - strand at 101.934 kb on - strand at 101.978 kb on - strand at 101.978 kb on - strand at 101.978 kb on - strand at 102.005 kb on + strand at 102.005 kb on + strand, within HGI48_RS00405 at 102.005 kb on + strand, within HGI48_RS00405 at 102.005 kb on + strand, within HGI48_RS00405 at 102.006 kb on - strand, within HGI48_RS00405 at 102.090 kb on + strand, within HGI48_RS00405 at 102.090 kb on + strand, within HGI48_RS00405 at 102.090 kb on + strand, within HGI48_RS00405 at 102.090 kb on + strand, within HGI48_RS00405 at 102.090 kb on + strand, within HGI48_RS00405 at 102.090 kb on + strand, within HGI48_RS00405 at 102.091 kb on - strand at 102.091 kb on - strand at 102.091 kb on - strand, within HGI48_RS00405 at 102.091 kb on - strand, within HGI48_RS00405 at 102.091 kb on - strand, within HGI48_RS00405 at 102.091 kb on - strand, within HGI48_RS00405 at 102.091 kb on - strand, within HGI48_RS00405 at 102.092 kb on + strand, within HGI48_RS00405 at 102.092 kb on + strand at 102.092 kb on + strand at 102.092 kb on + strand, within HGI48_RS00405 at 102.092 kb on + strand, within HGI48_RS00405 at 102.092 kb on + strand, within HGI48_RS00405 at 102.093 kb on - strand, within HGI48_RS00405 at 102.093 kb on - strand, within HGI48_RS00405 at 102.113 kb on + strand at 102.113 kb on + strand, within HGI48_RS00405 at 102.113 kb on + strand, within HGI48_RS00405 at 102.113 kb on + strand, within HGI48_RS00405 at 102.113 kb on + strand, within HGI48_RS00405 at 102.114 kb on - strand, within HGI48_RS00405 at 102.115 kb on + strand, within HGI48_RS00405 at 102.115 kb on + strand, within HGI48_RS00405 at 102.115 kb on + strand, within HGI48_RS00405 at 102.115 kb on + strand at 102.115 kb on + strand at 102.115 kb on + strand, within HGI48_RS00405 at 102.115 kb on + strand, within HGI48_RS00405 at 102.116 kb on - strand, within HGI48_RS00405 at 102.116 kb on - strand, within HGI48_RS00405 at 102.116 kb on - strand, within HGI48_RS00405 at 102.116 kb on - strand, within HGI48_RS00405 at 102.116 kb on - strand, within HGI48_RS00405 at 102.116 kb on - strand, within HGI48_RS00405 at 102.122 kb on + strand at 102.122 kb on + strand at 102.122 kb on + strand, within HGI48_RS00405 at 102.122 kb on + strand, within HGI48_RS00405 at 102.123 kb on - strand, within HGI48_RS00405 at 102.123 kb on - strand, within HGI48_RS00405 at 102.123 kb on - strand, within HGI48_RS00405 at 102.124 kb on + strand, within HGI48_RS00405 at 102.124 kb on + strand, within HGI48_RS00405 at 102.125 kb on - strand, within HGI48_RS00405 at 102.125 kb on - strand, within HGI48_RS00405 at 102.125 kb on - strand, within HGI48_RS00405 at 102.125 kb on - strand at 102.125 kb on - strand, within HGI48_RS00405 at 102.125 kb on - strand at 102.194 kb on + strand at 102.194 kb on + strand, within HGI48_RS00405 at 102.194 kb on + strand at 102.194 kb on + strand, within HGI48_RS00405 at 102.194 kb on + strand, within HGI48_RS00405 at 102.194 kb on + strand, within HGI48_RS00405 at 102.195 kb on - strand at 102.195 kb on - strand, within HGI48_RS00405 at 102.195 kb on - strand, within HGI48_RS00405 at 102.195 kb on - strand, within HGI48_RS00405 at 102.195 kb on - strand, within HGI48_RS00405 at 102.195 kb on - strand, within HGI48_RS00405 at 102.195 kb on - strand, within HGI48_RS00405 at 102.277 kb on + strand, within HGI48_RS00405 at 102.278 kb on - strand, within HGI48_RS00405 at 102.278 kb on - strand at 102.304 kb on - strand, within HGI48_RS00405 at 102.380 kb on + strand, within HGI48_RS00405 at 102.380 kb on + strand, within HGI48_RS00405 at 102.469 kb on + strand, within HGI48_RS00405 at 102.470 kb on - strand, within HGI48_RS00405 at 102.662 kb on - strand at 102.767 kb on + strand, within HGI48_RS00405 at 102.767 kb on + strand, within HGI48_RS00405 at 102.768 kb on - strand, within HGI48_RS00405 at 102.768 kb on - strand at 102.768 kb on - strand, within HGI48_RS00405 at 102.768 kb on - strand, within HGI48_RS00405 at 102.768 kb on - strand, within HGI48_RS00405 at 102.768 kb on - strand, within HGI48_RS00405 at 102.799 kb on - strand, within HGI48_RS00405 at 102.837 kb on + strand, within HGI48_RS00405 at 102.837 kb on + strand, within HGI48_RS00405
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 100,699 + -0.7 100,700 - -0.5 100,700 - +0.7 100,703 + -0.9 100,703 + -1.9 100,703 + -1.6 100,703 + -1.7 100,703 + -0.9 100,703 + -1.3 100,704 - +0.3 100,704 - -1.7 100,704 - -1.7 100,704 - -0.0 100,704 - +1.3 100,704 - +0.5 100,704 - -0.4 100,724 + -0.5 100,724 + -0.7 100,724 + -1.2 100,724 + -0.8 100,724 + +2.3 100,724 + -0.5 100,724 + +1.3 100,724 + -0.3 100,724 + -0.1 100,724 + -0.0 100,725 - -1.1 100,725 - -0.5 100,730 - +0.9 100,730 - -1.0 100,732 + -0.3 100,733 - -0.3 100,733 - +0.1 100,866 - HGI48_RS00390 0.55 -1.0 100,866 - HGI48_RS00390 0.55 +0.3 101,077 + HGI48_RS00395 0.17 +0.9 101,077 + +1.3 101,077 + -0.3 101,077 + HGI48_RS00395 0.17 -1.5 101,077 + HGI48_RS00395 0.17 -1.3 101,077 + HGI48_RS00395 0.17 +0.3 101,078 - HGI48_RS00395 0.17 -1.3 101,078 - HGI48_RS00395 0.17 -1.3 101,395 + HGI48_RS00395 0.69 +1.3 101,461 - HGI48_RS00395 0.79 -0.6 101,461 - HGI48_RS00395 0.79 -0.5 101,511 + HGI48_RS00395 0.88 -0.9 101,511 + HGI48_RS00395 0.88 -2.1 101,527 + +0.2 101,527 + -0.3 101,528 - -0.7 101,528 - -0.8 101,546 - +0.4 101,546 - -1.1 101,546 - -1.5 101,589 - -0.7 101,812 + HGI48_RS00400 0.61 +0.3 101,837 - HGI48_RS00400 0.75 +1.1 101,879 + +0.7 101,879 + +1.3 101,879 + +2.4 101,879 + +0.7 101,879 + -1.3 101,879 + +0.3 101,879 + -1.7 101,879 + +1.3 101,879 + -0.9 101,880 - +0.3 101,880 - -0.0 101,880 - -1.1 101,881 + -2.0 101,881 + +0.4 101,882 - -1.9 101,882 - -0.9 101,882 - -0.5 101,924 + -0.2 101,924 + -0.0 101,930 + -0.7 101,930 + -0.6 101,930 + -0.6 101,930 + +0.3 101,930 + -1.4 101,930 + -0.7 101,930 + -0.3 101,931 - -0.7 101,931 - -1.6 101,931 - -1.3 101,931 - -0.6 101,931 - +0.3 101,931 - -0.5 101,931 - -0.7 101,931 - -0.0 101,934 - +0.4 101,978 - +0.7 101,978 - -0.6 101,978 - +0.6 102,005 + +1.3 102,005 + HGI48_RS00405 0.12 +0.0 102,005 + HGI48_RS00405 0.12 -0.2 102,005 + HGI48_RS00405 0.12 -0.4 102,006 - HGI48_RS00405 0.12 +0.9 102,090 + HGI48_RS00405 0.20 -0.9 102,090 + HGI48_RS00405 0.20 +0.1 102,090 + HGI48_RS00405 0.20 -0.9 102,090 + HGI48_RS00405 0.20 -1.0 102,090 + HGI48_RS00405 0.20 +1.3 102,090 + HGI48_RS00405 0.20 -1.9 102,091 - +1.3 102,091 - +0.7 102,091 - HGI48_RS00405 0.20 +1.6 102,091 - HGI48_RS00405 0.20 -1.3 102,091 - HGI48_RS00405 0.20 -1.4 102,091 - HGI48_RS00405 0.20 -1.5 102,091 - HGI48_RS00405 0.20 -0.7 102,092 + HGI48_RS00405 0.20 -1.6 102,092 + +0.3 102,092 + +0.7 102,092 + HGI48_RS00405 0.20 -1.3 102,092 + HGI48_RS00405 0.20 -1.0 102,092 + HGI48_RS00405 0.20 -0.2 102,093 - HGI48_RS00405 0.20 -0.1 102,093 - HGI48_RS00405 0.20 -0.7 102,113 + -0.3 102,113 + HGI48_RS00405 0.22 -0.7 102,113 + HGI48_RS00405 0.22 -0.4 102,113 + HGI48_RS00405 0.22 -0.5 102,113 + HGI48_RS00405 0.22 -0.9 102,114 - HGI48_RS00405 0.22 +0.1 102,115 + HGI48_RS00405 0.22 -0.7 102,115 + HGI48_RS00405 0.22 -0.7 102,115 + HGI48_RS00405 0.22 -0.3 102,115 + +0.7 102,115 + -0.3 102,115 + HGI48_RS00405 0.22 -2.6 102,115 + HGI48_RS00405 0.22 +0.3 102,116 - HGI48_RS00405 0.23 -1.7 102,116 - HGI48_RS00405 0.23 -0.0 102,116 - HGI48_RS00405 0.23 -1.5 102,116 - HGI48_RS00405 0.23 -0.3 102,116 - HGI48_RS00405 0.23 -1.0 102,116 - HGI48_RS00405 0.23 -0.3 102,122 + +0.3 102,122 + +3.6 102,122 + HGI48_RS00405 0.23 +0.3 102,122 + HGI48_RS00405 0.23 -0.2 102,123 - HGI48_RS00405 0.23 -0.7 102,123 - HGI48_RS00405 0.23 -0.7 102,123 - HGI48_RS00405 0.23 +0.6 102,124 + HGI48_RS00405 0.23 +0.8 102,124 + HGI48_RS00405 0.23 -0.7 102,125 - HGI48_RS00405 0.23 +0.3 102,125 - HGI48_RS00405 0.23 -2.0 102,125 - HGI48_RS00405 0.23 +0.8 102,125 - +1.3 102,125 - HGI48_RS00405 0.23 +0.3 102,125 - +0.3 102,194 + +2.0 102,194 + HGI48_RS00405 0.30 +1.3 102,194 + +0.3 102,194 + HGI48_RS00405 0.30 +1.3 102,194 + HGI48_RS00405 0.30 -0.4 102,194 + HGI48_RS00405 0.30 -0.7 102,195 - +2.0 102,195 - HGI48_RS00405 0.30 +0.0 102,195 - HGI48_RS00405 0.30 -0.4 102,195 - HGI48_RS00405 0.30 -2.3 102,195 - HGI48_RS00405 0.30 -1.3 102,195 - HGI48_RS00405 0.30 +0.3 102,195 - HGI48_RS00405 0.30 -1.4 102,277 + HGI48_RS00405 0.37 -1.2 102,278 - HGI48_RS00405 0.37 -1.2 102,278 - -0.3 102,304 - HGI48_RS00405 0.40 -1.5 102,380 + HGI48_RS00405 0.47 -0.0 102,380 + HGI48_RS00405 0.47 -0.5 102,469 + HGI48_RS00405 0.55 +3.6 102,470 - HGI48_RS00405 0.55 -0.5 102,662 - +1.3 102,767 + HGI48_RS00405 0.82 -0.3 102,767 + HGI48_RS00405 0.82 -2.3 102,768 - HGI48_RS00405 0.82 -0.1 102,768 - +1.3 102,768 - HGI48_RS00405 0.82 -0.8 102,768 - HGI48_RS00405 0.82 -1.5 102,768 - HGI48_RS00405 0.82 -1.3 102,768 - HGI48_RS00405 0.82 +0.3 102,799 - HGI48_RS00405 0.85 +0.6 102,837 + HGI48_RS00405 0.89 -0.3 102,837 + HGI48_RS00405 0.89 -0.1
Or see this region's nucleotide sequence