Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00150

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00145 and HGI48_RS00150 overlap by 4 nucleotidesHGI48_RS00150 and HGI48_RS00155 are separated by 1 nucleotidesHGI48_RS00155 and HGI48_RS00160 are separated by 29 nucleotides HGI48_RS00145: HGI48_RS00145 - ABC transporter ATP-binding protein, at 36,780 to 38,477 _RS00145 HGI48_RS00150: HGI48_RS00150 - ABC transporter permease, at 38,474 to 39,349 _RS00150 HGI48_RS00155: HGI48_RS00155 - ABC transporter permease, at 39,351 to 40,292 _RS00155 HGI48_RS00160: HGI48_RS00160 - TIGR04028 family ABC transporter substrate-binding protein, at 40,322 to 41,965 _RS00160 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 37.677 kb on - strand, within HGI48_RS00145at 37.748 kb on + strand, within HGI48_RS00145at 37.748 kb on + strand, within HGI48_RS00145at 37.748 kb on + strand, within HGI48_RS00145at 37.749 kb on - strand, within HGI48_RS00145at 37.749 kb on - strand, within HGI48_RS00145at 37.749 kb on - strandat 37.750 kb on + strand, within HGI48_RS00145at 37.750 kb on + strandat 37.750 kb on + strandat 37.751 kb on - strand, within HGI48_RS00145at 37.751 kb on - strand, within HGI48_RS00145at 37.751 kb on - strand, within HGI48_RS00145at 37.751 kb on - strandat 37.751 kb on - strand, within HGI48_RS00145at 37.751 kb on - strandat 37.764 kb on + strand, within HGI48_RS00145at 37.764 kb on + strand, within HGI48_RS00145at 37.765 kb on - strand, within HGI48_RS00145at 38.186 kb on + strandat 38.219 kb on + strand, within HGI48_RS00145at 38.220 kb on - strand, within HGI48_RS00145at 38.220 kb on - strand, within HGI48_RS00145at 38.580 kb on + strand, within HGI48_RS00150at 38.580 kb on + strand, within HGI48_RS00150at 38.581 kb on - strand, within HGI48_RS00150at 38.581 kb on - strand, within HGI48_RS00150at 38.581 kb on - strand, within HGI48_RS00150at 38.581 kb on - strand, within HGI48_RS00150at 38.731 kb on + strand, within HGI48_RS00150at 38.731 kb on + strand, within HGI48_RS00150at 38.731 kb on + strand, within HGI48_RS00150at 38.732 kb on - strand, within HGI48_RS00150at 38.732 kb on - strand, within HGI48_RS00150at 38.732 kb on - strand, within HGI48_RS00150at 38.732 kb on - strand, within HGI48_RS00150at 38.750 kb on - strandat 39.090 kb on + strand, within HGI48_RS00150at 39.090 kb on + strand, within HGI48_RS00150at 39.091 kb on - strandat 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.127 kb on - strand, within HGI48_RS00150at 39.127 kb on - strand, within HGI48_RS00150at 39.141 kb on + strand, within HGI48_RS00150at 39.141 kb on + strandat 39.141 kb on + strand, within HGI48_RS00150at 39.141 kb on + strand, within HGI48_RS00150at 39.142 kb on - strand, within HGI48_RS00150at 39.142 kb on - strand, within HGI48_RS00150at 39.142 kb on - strand, within HGI48_RS00150at 39.305 kb on - strandat 39.349 kb on + strandat 39.349 kb on + strandat 39.349 kb on + strandat 39.350 kb on - strandat 39.462 kb on + strand, within HGI48_RS00155at 39.462 kb on + strand, within HGI48_RS00155at 39.463 kb on - strand, within HGI48_RS00155at 39.463 kb on - strand, within HGI48_RS00155at 40.001 kb on + strand, within HGI48_RS00155at 40.118 kb on - strand, within HGI48_RS00155at 40.153 kb on - strand, within HGI48_RS00155at 40.209 kb on + strandat 40.229 kb on + strandat 40.229 kb on + strandat 40.229 kb on + strandat 40.230 kb on - strandat 40.279 kb on + strandat 40.279 kb on + strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.323 kb on + strandat 40.344 kb on + strandat 40.345 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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37,677 - HGI48_RS00145 0.53 -1.3
37,748 + HGI48_RS00145 0.57 +0.3
37,748 + HGI48_RS00145 0.57 -1.7
37,748 + HGI48_RS00145 0.57 -1.6
37,749 - HGI48_RS00145 0.57 +0.3
37,749 - HGI48_RS00145 0.57 -0.7
37,749 - +0.7
37,750 + HGI48_RS00145 0.57 +0.3
37,750 + -0.3
37,750 + -0.3
37,751 - HGI48_RS00145 0.57 +0.3
37,751 - HGI48_RS00145 0.57 +0.3
37,751 - HGI48_RS00145 0.57 +1.1
37,751 - +3.6
37,751 - HGI48_RS00145 0.57 -0.0
37,751 - +0.3
37,764 + HGI48_RS00145 0.58 -1.3
37,764 + HGI48_RS00145 0.58 -2.0
37,765 - HGI48_RS00145 0.58 -0.0
38,186 + +2.5
38,219 + HGI48_RS00145 0.85 -0.7
38,220 - HGI48_RS00145 0.85 -1.9
38,220 - HGI48_RS00145 0.85 +0.9
38,580 + HGI48_RS00150 0.12 -1.0
38,580 + HGI48_RS00150 0.12 -0.7
38,581 - HGI48_RS00150 0.12 -2.6
38,581 - HGI48_RS00150 0.12 -0.4
38,581 - HGI48_RS00150 0.12 -2.2
38,581 - HGI48_RS00150 0.12 -1.0
38,731 + HGI48_RS00150 0.29 +0.3
38,731 + HGI48_RS00150 0.29 -1.3
38,731 + HGI48_RS00150 0.29 -0.3
38,732 - HGI48_RS00150 0.29 -0.3
38,732 - HGI48_RS00150 0.29 -0.1
38,732 - HGI48_RS00150 0.29 +0.3
38,732 - HGI48_RS00150 0.29 -0.0
38,750 - +1.9
39,090 + HGI48_RS00150 0.70 -0.5
39,090 + HGI48_RS00150 0.70 -0.5
39,091 - +3.1
39,126 + HGI48_RS00150 0.74 -0.9
39,126 + HGI48_RS00150 0.74 -1.5
39,126 + HGI48_RS00150 0.74 -2.0
39,126 + HGI48_RS00150 0.74 +1.1
39,126 + HGI48_RS00150 0.74 -1.7
39,126 + HGI48_RS00150 0.74 -0.7
39,126 + HGI48_RS00150 0.74 -0.8
39,126 + HGI48_RS00150 0.74 -0.5
39,127 - HGI48_RS00150 0.75 -0.7
39,127 - HGI48_RS00150 0.75 -1.3
39,141 + HGI48_RS00150 0.76 -2.2
39,141 + +0.7
39,141 + HGI48_RS00150 0.76 -1.0
39,141 + HGI48_RS00150 0.76 -0.1
39,142 - HGI48_RS00150 0.76 -0.9
39,142 - HGI48_RS00150 0.76 +0.3
39,142 - HGI48_RS00150 0.76 -0.6
39,305 - +0.3
39,349 + -1.9
39,349 + -0.5
39,349 + +2.3
39,350 - -0.0
39,462 + HGI48_RS00155 0.12 -2.0
39,462 + HGI48_RS00155 0.12 +1.5
39,463 - HGI48_RS00155 0.12 -1.0
39,463 - HGI48_RS00155 0.12 -2.3
40,001 + HGI48_RS00155 0.69 -0.5
40,118 - HGI48_RS00155 0.81 -0.5
40,153 - HGI48_RS00155 0.85 -3.0
40,209 + -1.0
40,229 + -0.2
40,229 + -1.5
40,229 + -1.0
40,230 - +1.4
40,279 + -1.3
40,279 + -1.3
40,280 - -0.3
40,280 - -0.9
40,280 - +0.3
40,280 - -1.3
40,323 + +0.6
40,344 + -1.9
40,345 - -0.3

Or see this region's nucleotide sequence