Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00090 and HGI48_RS00095 are separated by 93 nucleotides HGI48_RS00095 and HGI48_RS00100 are separated by 5 nucleotides HGI48_RS00100 and HGI48_RS00105 are separated by 38 nucleotides
HGI48_RS00090: HGI48_RS00090 - formyl-CoA transferase, at 24,219 to 25,466
_RS00090
HGI48_RS00095: HGI48_RS00095 - PAS domain-containing protein, at 25,560 to 25,997
_RS00095
HGI48_RS00100: HGI48_RS00100 - formyl-CoA transferase, at 26,003 to 27,280
_RS00100
HGI48_RS00105: HGI48_RS00105 - oxalyl-CoA decarboxylase, at 27,319 to 29,064
_RS00105
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 25.054 kb on + strand, within HGI48_RS00090 at 25.133 kb on + strand, within HGI48_RS00090 at 25.133 kb on + strand, within HGI48_RS00090 at 25.133 kb on + strand, within HGI48_RS00090 at 25.134 kb on - strand at 25.134 kb on - strand, within HGI48_RS00090 at 25.134 kb on - strand, within HGI48_RS00090 at 25.227 kb on + strand, within HGI48_RS00090 at 25.228 kb on - strand, within HGI48_RS00090 at 25.228 kb on - strand, within HGI48_RS00090 at 25.286 kb on + strand, within HGI48_RS00090 at 25.286 kb on + strand at 25.287 kb on - strand, within HGI48_RS00090 at 25.287 kb on - strand, within HGI48_RS00090 at 25.303 kb on - strand, within HGI48_RS00090 at 25.303 kb on - strand, within HGI48_RS00090 at 25.303 kb on - strand, within HGI48_RS00090 at 25.303 kb on - strand, within HGI48_RS00090 at 25.320 kb on + strand, within HGI48_RS00090 at 25.321 kb on - strand, within HGI48_RS00090 at 25.364 kb on + strand at 25.364 kb on + strand at 25.365 kb on - strand at 25.365 kb on - strand at 25.393 kb on - strand at 25.401 kb on - strand at 25.419 kb on + strand at 25.419 kb on + strand at 25.419 kb on + strand at 25.419 kb on + strand at 25.420 kb on - strand at 25.420 kb on - strand at 25.420 kb on - strand at 25.420 kb on - strand at 25.420 kb on - strand at 25.427 kb on + strand at 25.437 kb on - strand at 25.452 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.493 kb on + strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.494 kb on - strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.495 kb on + strand at 25.496 kb on - strand at 25.496 kb on - strand at 25.496 kb on - strand at 25.496 kb on - strand at 25.496 kb on - strand at 25.528 kb on + strand at 25.528 kb on + strand at 25.529 kb on - strand at 25.529 kb on - strand at 25.529 kb on - strand at 25.547 kb on - strand at 25.946 kb on + strand, within HGI48_RS00095 at 25.946 kb on + strand at 25.946 kb on + strand, within HGI48_RS00095 at 25.947 kb on - strand, within HGI48_RS00095 at 25.971 kb on + strand at 25.971 kb on + strand at 25.972 kb on - strand at 25.983 kb on + strand at 25.983 kb on + strand at 25.983 kb on + strand at 25.984 kb on - strand at 25.984 kb on - strand at 25.984 kb on - strand at 26.154 kb on + strand, within HGI48_RS00100 at 26.267 kb on - strand, within HGI48_RS00100 at 26.274 kb on + strand, within HGI48_RS00100 at 26.274 kb on + strand, within HGI48_RS00100 at 26.274 kb on + strand, within HGI48_RS00100 at 26.274 kb on + strand, within HGI48_RS00100 at 26.275 kb on - strand, within HGI48_RS00100 at 26.289 kb on + strand, within HGI48_RS00100 at 26.289 kb on + strand, within HGI48_RS00100 at 26.289 kb on + strand at 26.290 kb on - strand, within HGI48_RS00100 at 26.374 kb on + strand, within HGI48_RS00100 at 26.374 kb on + strand, within HGI48_RS00100 at 26.374 kb on + strand, within HGI48_RS00100 at 26.375 kb on - strand, within HGI48_RS00100 at 26.376 kb on + strand, within HGI48_RS00100 at 26.376 kb on + strand, within HGI48_RS00100 at 26.376 kb on + strand, within HGI48_RS00100 at 26.376 kb on + strand, within HGI48_RS00100 at 26.376 kb on + strand, within HGI48_RS00100 at 26.377 kb on - strand, within HGI48_RS00100 at 26.409 kb on - strand, within HGI48_RS00100 at 26.449 kb on + strand at 26.454 kb on + strand at 26.454 kb on + strand, within HGI48_RS00100 at 26.454 kb on + strand at 26.454 kb on + strand, within HGI48_RS00100 at 26.455 kb on - strand at 26.458 kb on + strand, within HGI48_RS00100 at 26.458 kb on + strand, within HGI48_RS00100 at 26.459 kb on - strand, within HGI48_RS00100 at 26.459 kb on - strand, within HGI48_RS00100 at 26.459 kb on - strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.460 kb on + strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.461 kb on - strand, within HGI48_RS00100 at 26.571 kb on + strand, within HGI48_RS00100 at 26.662 kb on + strand, within HGI48_RS00100 at 26.663 kb on - strand, within HGI48_RS00100 at 26.709 kb on + strand, within HGI48_RS00100 at 26.709 kb on + strand, within HGI48_RS00100 at 26.709 kb on + strand, within HGI48_RS00100 at 26.709 kb on + strand, within HGI48_RS00100 at 26.709 kb on + strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.710 kb on - strand, within HGI48_RS00100 at 26.853 kb on + strand, within HGI48_RS00100 at 26.948 kb on - strand, within HGI48_RS00100 at 27.010 kb on + strand, within HGI48_RS00100 at 27.011 kb on - strand, within HGI48_RS00100 at 27.023 kb on + strand, within HGI48_RS00100 at 27.023 kb on + strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.024 kb on - strand, within HGI48_RS00100 at 27.093 kb on + strand, within HGI48_RS00100 at 27.093 kb on + strand, within HGI48_RS00100 at 27.093 kb on + strand, within HGI48_RS00100 at 27.093 kb on + strand, within HGI48_RS00100 at 27.094 kb on - strand, within HGI48_RS00100 at 27.094 kb on - strand, within HGI48_RS00100 at 27.122 kb on + strand, within HGI48_RS00100 at 27.123 kb on - strand, within HGI48_RS00100 at 27.170 kb on + strand at 27.170 kb on + strand at 27.171 kb on - strand at 27.202 kb on + strand at 27.202 kb on + strand at 27.202 kb on + strand at 27.203 kb on - strand at 27.203 kb on - strand at 27.203 kb on - strand at 27.203 kb on - strand at 27.581 kb on + strand, within HGI48_RS00105 at 27.582 kb on - strand, within HGI48_RS00105 at 27.582 kb on - strand, within HGI48_RS00105 at 27.582 kb on - strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.788 kb on + strand, within HGI48_RS00105 at 27.789 kb on - strand, within HGI48_RS00105 at 27.789 kb on - strand, within HGI48_RS00105 at 27.789 kb on - strand, within HGI48_RS00105 at 27.789 kb on - strand, within HGI48_RS00105 at 27.789 kb on - strand at 28.120 kb on - strand, within HGI48_RS00105 at 28.225 kb on + strand at 28.225 kb on + strand at 28.225 kb on + strand, within HGI48_RS00105 at 28.225 kb on + strand, within HGI48_RS00105 at 28.225 kb on + strand, within HGI48_RS00105 at 28.225 kb on + strand, within HGI48_RS00105 at 28.226 kb on - strand, within HGI48_RS00105 at 28.226 kb on - strand, within HGI48_RS00105 at 28.226 kb on - strand, within HGI48_RS00105 at 28.226 kb on - strand, within HGI48_RS00105 at 28.226 kb on - strand, within HGI48_RS00105 at 28.229 kb on + strand, within HGI48_RS00105 at 28.229 kb on + strand, within HGI48_RS00105 at 28.229 kb on + strand, within HGI48_RS00105 at 28.229 kb on + strand at 28.229 kb on + strand, within HGI48_RS00105 at 28.229 kb on + strand, within HGI48_RS00105 at 28.229 kb on + strand, within HGI48_RS00105 at 28.230 kb on - strand at 28.230 kb on - strand, within HGI48_RS00105 at 28.230 kb on - strand, within HGI48_RS00105 at 28.230 kb on - strand, within HGI48_RS00105
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 25,054 + HGI48_RS00090 0.67 -1.3 25,133 + HGI48_RS00090 0.73 +0.3 25,133 + HGI48_RS00090 0.73 -1.0 25,133 + HGI48_RS00090 0.73 +0.1 25,134 - +0.3 25,134 - HGI48_RS00090 0.73 -0.5 25,134 - HGI48_RS00090 0.73 -1.0 25,227 + HGI48_RS00090 0.81 -1.3 25,228 - HGI48_RS00090 0.81 -1.0 25,228 - HGI48_RS00090 0.81 -1.3 25,286 + HGI48_RS00090 0.85 +2.9 25,286 + +1.3 25,287 - HGI48_RS00090 0.86 +1.6 25,287 - HGI48_RS00090 0.86 +0.2 25,303 - HGI48_RS00090 0.87 -2.0 25,303 - HGI48_RS00090 0.87 -1.0 25,303 - HGI48_RS00090 0.87 -0.1 25,303 - HGI48_RS00090 0.87 -0.8 25,320 + HGI48_RS00090 0.88 -0.5 25,321 - HGI48_RS00090 0.88 -0.7 25,364 + +2.5 25,364 + -0.4 25,365 - -1.0 25,365 - +0.2 25,393 - +1.6 25,401 - -0.6 25,419 + -0.0 25,419 + -1.3 25,419 + -0.8 25,419 + +1.7 25,420 - -1.7 25,420 - +0.2 25,420 - +0.8 25,420 - +0.0 25,420 - +0.3 25,427 + -0.7 25,437 - -0.6 25,452 + +0.1 25,493 + +0.8 25,493 + +1.3 25,493 + -0.5 25,493 + -1.3 25,493 + -0.6 25,493 + -1.5 25,493 + +0.9 25,493 + +0.7 25,493 + +0.2 25,493 + -0.0 25,493 + -0.7 25,493 + +1.3 25,493 + -0.2 25,494 - -0.0 25,494 - -0.7 25,494 - +1.0 25,494 - +0.6 25,494 - -0.8 25,494 - -1.3 25,494 - +0.9 25,494 - -0.7 25,495 + -0.8 25,495 + -1.4 25,495 + -0.7 25,495 + +2.3 25,495 + -0.0 25,495 + -1.3 25,495 + +0.6 25,496 - -0.7 25,496 - +0.3 25,496 - -0.0 25,496 - -1.7 25,496 - +1.3 25,528 + -1.3 25,528 + +0.3 25,529 - +0.6 25,529 - -0.7 25,529 - +1.3 25,547 - -0.3 25,946 + HGI48_RS00095 0.88 -1.9 25,946 + -0.3 25,946 + HGI48_RS00095 0.88 -0.1 25,947 - HGI48_RS00095 0.88 +0.1 25,971 + -0.7 25,971 + +0.1 25,972 - -0.1 25,983 + +1.3 25,983 + +1.3 25,983 + +0.4 25,984 - -0.1 25,984 - -0.9 25,984 - -1.3 26,154 + HGI48_RS00100 0.12 +1.0 26,267 - HGI48_RS00100 0.21 -0.5 26,274 + HGI48_RS00100 0.21 -0.1 26,274 + HGI48_RS00100 0.21 -1.9 26,274 + HGI48_RS00100 0.21 +0.2 26,274 + HGI48_RS00100 0.21 -0.1 26,275 - HGI48_RS00100 0.21 -0.0 26,289 + HGI48_RS00100 0.22 +1.4 26,289 + HGI48_RS00100 0.22 +0.3 26,289 + +0.3 26,290 - HGI48_RS00100 0.22 -1.0 26,374 + HGI48_RS00100 0.29 -0.6 26,374 + HGI48_RS00100 0.29 +1.0 26,374 + HGI48_RS00100 0.29 -1.7 26,375 - HGI48_RS00100 0.29 -0.3 26,376 + HGI48_RS00100 0.29 -0.1 26,376 + HGI48_RS00100 0.29 -0.5 26,376 + HGI48_RS00100 0.29 -1.3 26,376 + HGI48_RS00100 0.29 +0.1 26,376 + HGI48_RS00100 0.29 -1.5 26,377 - HGI48_RS00100 0.29 -0.7 26,409 - HGI48_RS00100 0.32 -1.0 26,449 + +2.9 26,454 + +0.7 26,454 + HGI48_RS00100 0.35 +1.3 26,454 + +1.3 26,454 + HGI48_RS00100 0.35 -0.7 26,455 - -0.3 26,458 + HGI48_RS00100 0.36 -0.2 26,458 + HGI48_RS00100 0.36 +1.2 26,459 - HGI48_RS00100 0.36 +1.3 26,459 - HGI48_RS00100 0.36 -0.4 26,459 - HGI48_RS00100 0.36 +0.1 26,460 + HGI48_RS00100 0.36 +0.8 26,460 + HGI48_RS00100 0.36 -1.3 26,460 + HGI48_RS00100 0.36 +0.9 26,460 + HGI48_RS00100 0.36 -0.3 26,460 + +3.3 26,460 + HGI48_RS00100 0.36 -1.3 26,460 + HGI48_RS00100 0.36 -0.5 26,460 + HGI48_RS00100 0.36 -1.0 26,460 + HGI48_RS00100 0.36 -1.0 26,460 + HGI48_RS00100 0.36 -0.3 26,460 + HGI48_RS00100 0.36 +0.5 26,461 - HGI48_RS00100 0.36 -1.5 26,461 - HGI48_RS00100 0.36 -1.0 26,461 - HGI48_RS00100 0.36 +0.9 26,461 - HGI48_RS00100 0.36 -1.1 26,461 - +0.7 26,461 - HGI48_RS00100 0.36 -1.3 26,461 - HGI48_RS00100 0.36 -0.6 26,461 - HGI48_RS00100 0.36 -1.2 26,461 - HGI48_RS00100 0.36 +0.2 26,571 + HGI48_RS00100 0.44 -0.6 26,662 + HGI48_RS00100 0.52 -0.4 26,663 - HGI48_RS00100 0.52 -0.7 26,709 + HGI48_RS00100 0.55 -2.7 26,709 + HGI48_RS00100 0.55 -2.0 26,709 + HGI48_RS00100 0.55 -1.0 26,709 + HGI48_RS00100 0.55 -1.0 26,709 + HGI48_RS00100 0.55 +0.3 26,710 - HGI48_RS00100 0.55 -0.0 26,710 - HGI48_RS00100 0.55 +0.9 26,710 - HGI48_RS00100 0.55 -0.5 26,710 - HGI48_RS00100 0.55 -0.1 26,710 - HGI48_RS00100 0.55 -0.9 26,710 - HGI48_RS00100 0.55 -0.8 26,710 - HGI48_RS00100 0.55 -0.0 26,853 + HGI48_RS00100 0.67 -2.3 26,948 - HGI48_RS00100 0.74 -0.3 27,010 + HGI48_RS00100 0.79 -0.3 27,011 - HGI48_RS00100 0.79 -0.7 27,023 + HGI48_RS00100 0.80 +0.1 27,023 + HGI48_RS00100 0.80 +1.0 27,024 - HGI48_RS00100 0.80 -1.5 27,024 - HGI48_RS00100 0.80 -0.1 27,024 - HGI48_RS00100 0.80 -1.9 27,024 - HGI48_RS00100 0.80 +0.8 27,024 - HGI48_RS00100 0.80 -0.2 27,024 - HGI48_RS00100 0.80 +0.6 27,024 - HGI48_RS00100 0.80 +0.3 27,093 + HGI48_RS00100 0.85 -1.2 27,093 + HGI48_RS00100 0.85 -0.0 27,093 + HGI48_RS00100 0.85 -1.3 27,093 + HGI48_RS00100 0.85 -0.9 27,094 - HGI48_RS00100 0.85 -2.2 27,094 - HGI48_RS00100 0.85 -0.8 27,122 + HGI48_RS00100 0.88 +0.0 27,123 - HGI48_RS00100 0.88 -0.4 27,170 + -1.0 27,170 + -1.7 27,171 - +0.4 27,202 + -0.7 27,202 + -1.3 27,202 + +0.6 27,203 - +0.6 27,203 - -0.6 27,203 - -1.3 27,203 - -0.3 27,581 + HGI48_RS00105 0.15 -0.7 27,582 - HGI48_RS00105 0.15 +0.0 27,582 - HGI48_RS00105 0.15 -1.8 27,582 - HGI48_RS00105 0.15 -0.1 27,788 + HGI48_RS00105 0.27 -1.5 27,788 + HGI48_RS00105 0.27 -1.5 27,788 + HGI48_RS00105 0.27 +0.1 27,788 + HGI48_RS00105 0.27 -1.7 27,788 + HGI48_RS00105 0.27 -0.0 27,788 + HGI48_RS00105 0.27 -0.3 27,789 - HGI48_RS00105 0.27 -0.4 27,789 - HGI48_RS00105 0.27 -0.1 27,789 - HGI48_RS00105 0.27 -0.7 27,789 - HGI48_RS00105 0.27 +0.0 27,789 - -0.3 28,120 - HGI48_RS00105 0.46 +0.6 28,225 + +0.3 28,225 + +0.3 28,225 + HGI48_RS00105 0.52 -0.5 28,225 + HGI48_RS00105 0.52 -0.2 28,225 + HGI48_RS00105 0.52 +0.1 28,225 + HGI48_RS00105 0.52 +0.3 28,226 - HGI48_RS00105 0.52 -1.9 28,226 - HGI48_RS00105 0.52 +0.3 28,226 - HGI48_RS00105 0.52 -0.9 28,226 - HGI48_RS00105 0.52 +0.1 28,226 - HGI48_RS00105 0.52 -1.9 28,229 + HGI48_RS00105 0.52 -1.6 28,229 + HGI48_RS00105 0.52 -0.1 28,229 + HGI48_RS00105 0.52 -1.0 28,229 + +2.3 28,229 + HGI48_RS00105 0.52 -0.3 28,229 + HGI48_RS00105 0.52 -1.9 28,229 + HGI48_RS00105 0.52 -0.8 28,230 - -0.3 28,230 - HGI48_RS00105 0.52 +0.6 28,230 - HGI48_RS00105 0.52 -0.7 28,230 - HGI48_RS00105 0.52 +0.1
Or see this region's nucleotide sequence