Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21585

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,815,957	+				+0.1
4,815,957	+				+0.1
4,815,958	-				-1.7
4,815,968	+				-0.5
4,815,968	+				-0.3
4,815,968	+				-0.1
4,815,969	-				-1.3
4,815,969	-				+1.4
4,815,969	-				+0.7
4,815,969	-				+0.7
4,815,973	-				-1.0
4,815,973	-				+0.0
4,816,029	+				-0.2
4,816,044	-				+0.5
4,816,044	-				-0.5
4,816,044	-				+0.1
4,816,044	-				-0.3
4,816,044	-				-0.5
4,816,090	-				+0.3
4,816,091	+				-0.9
4,816,091	+				+0.9
4,816,091	+				+0.1
4,816,091	+				+0.1
4,816,092	-				-0.7
4,816,092	-				-0.3
4,816,092	-				-0.9
4,816,092	-				+0.3
4,816,096	+				-1.7
4,816,096	+				-0.3
4,816,096	+				-0.5
4,816,096	+				+0.8
4,816,096	+				+0.7
4,816,096	+				+1.1
4,816,096	+				+0.7
4,816,096	+				+0.9
4,816,096	+				+0.3
4,816,096	+				-0.2
4,816,096	+				-1.3
4,816,096	+				+0.7
4,816,096	+				-0.9
4,816,096	+				-1.3
4,816,096	+				-0.5
4,816,096	+				-0.5
4,816,097	-				+0.1
4,816,097	-				-0.6
4,816,097	-				+2.1
4,816,097	-				+0.1
4,816,097	-				+0.6
4,816,097	-				+0.1
4,816,097	-				+0.1
4,816,097	-				-2.8
4,816,097	-				+1.1
4,816,097	-				+0.5
4,816,097	-				-0.5
4,816,097	-				-0.5
4,816,097	-				+0.1
4,816,097	-				-2.3
4,816,097	-				-1.2
4,816,097	-				-0.5
4,816,104	+				-2.1
4,816,104	+				-0.6
4,816,105	-				-0.5
4,816,105	-				+0.1
4,816,105	-				+1.7
4,816,105	-				+1.1
4,816,105	-				-0.7
4,816,108	-				-1.1
4,816,117	+				+0.8
4,816,117	+				+0.1
4,816,118	-				-0.4
4,816,118	-				-0.2
4,816,118	-				+0.1
4,816,123	-				-0.9
4,816,123	-				-0.0
4,816,167	+				+0.7
4,816,368	+		HGI48_RS21585	0.17	-0.9
4,816,369	-		HGI48_RS21585	0.17	-1.8
4,816,369	-		HGI48_RS21585	0.17	-0.2
4,816,401	+		HGI48_RS21585	0.21	+0.0
4,816,402	-		HGI48_RS21585	0.21	+2.2
4,816,450	+		HGI48_RS21585	0.27	+0.2
4,816,450	+		HGI48_RS21585	0.27	-0.4
4,816,450	+		HGI48_RS21585	0.27	+1.6
4,816,451	-				+3.7
4,816,451	-		HGI48_RS21585	0.27	+0.7
4,816,482	-		HGI48_RS21585	0.30	+1.5
4,816,575	+		HGI48_RS21585	0.42	-0.3
4,816,576	-		HGI48_RS21585	0.42	-0.7
4,816,768	+		HGI48_RS21585	0.65	-0.5
4,816,768	+		HGI48_RS21585	0.65	+1.1
4,816,768	+		HGI48_RS21585	0.65	-0.1
4,816,768	+		HGI48_RS21585	0.65	-0.3
4,816,768	+		HGI48_RS21585	0.65	-1.7
4,816,768	+		HGI48_RS21585	0.65	-2.3
4,816,769	-		HGI48_RS21585	0.65	-0.0
4,816,769	-		HGI48_RS21585	0.65	-2.3
4,816,769	-		HGI48_RS21585	0.65	-0.2
4,816,769	-		HGI48_RS21585	0.65	-1.4
4,816,769	-		HGI48_RS21585	0.65	+0.6
4,816,769	-		HGI48_RS21585	0.65	-1.2
4,816,769	-		HGI48_RS21585	0.65	+2.6
4,816,875	+		HGI48_RS21585	0.77	+0.7
4,816,875	+		HGI48_RS21585	0.77	-0.2
4,816,875	+		HGI48_RS21585	0.77	+0.1
4,816,876	-		HGI48_RS21585	0.78	+0.3
4,816,925	-		HGI48_RS21585	0.83	-0.3
4,816,974	+		HGI48_RS21585	0.89	+1.4
4,816,974	+		HGI48_RS21585	0.89	+0.5
4,816,975	-		HGI48_RS21585	0.89	-0.8
4,817,092	+				+0.2
4,817,092	+				+0.1
4,817,093	-				-1.4
4,817,093	-				+1.3
4,817,093	-				+1.4
4,817,100	+				+1.7
4,817,151	+				-0.4
4,817,151	+				-1.3
4,817,151	+				-0.5
4,817,151	+				-1.5
4,817,151	+				-1.3
4,817,152	-				+0.1
4,817,152	-				-1.7
4,817,170	-				-0.5
4,817,209	+				-0.9
4,817,210	-				-0.9
4,817,319	+		HGI48_RS21590	0.22	+2.1
4,817,351	-				-0.5
4,817,402	-		HGI48_RS21590	0.33	-1.3
4,817,531	-				+2.7
4,817,545	-				+2.1
4,817,596	+		HGI48_RS21590	0.59	+0.6
4,817,641	+		HGI48_RS21590	0.65	+0.5
4,817,642	-		HGI48_RS21590	0.66	+0.8
4,817,642	-		HGI48_RS21590	0.66	+0.1
4,817,695	+		HGI48_RS21590	0.73	+0.9
4,817,695	+		HGI48_RS21590	0.73	+0.9
4,817,695	+		HGI48_RS21590	0.73	+0.7
4,817,696	-		HGI48_RS21590	0.73	+0.1
4,817,696	-		HGI48_RS21590	0.73	-0.9
4,817,696	-		HGI48_RS21590	0.73	+1.4
4,817,696	-		HGI48_RS21590	0.73	-0.9
4,817,709	+		HGI48_RS21590	0.75	+0.8
4,817,755	+		HGI48_RS21590	0.81	-1.6
4,817,756	-		HGI48_RS21590	0.81	-1.9
4,817,819	+		HGI48_RS21590	0.89	+0.5
4,817,819	+		HGI48_RS21590	0.89	-0.7
4,817,819	+		HGI48_RS21590	0.89	-1.5
4,817,819	+		HGI48_RS21590	0.89	+0.7
4,817,819	+		HGI48_RS21590	0.89	-1.3
4,817,819	+		HGI48_RS21590	0.89	+0.7
4,817,819	+		HGI48_RS21590	0.89	+0.4
4,817,819	+				-0.5
4,817,820	-		HGI48_RS21590	0.89	-1.7
4,817,820	-		HGI48_RS21590	0.89	+0.8
4,817,820	-				+1.5
4,817,824	+				-0.3
4,817,824	+				+0.1
4,817,824	+				+1.1
4,817,824	+				-0.7
4,817,824	+				-3.1
4,817,824	+				+0.7
4,817,824	+				+0.3
4,817,824	+				-0.7
4,817,824	+				-0.3
4,817,824	+				+1.3
4,817,824	+				-0.4
4,817,824	+				-0.5
4,817,824	+				-2.1
4,817,825	-				-0.3
4,817,825	-				+0.6
4,817,825	-				-0.0
4,817,825	-				-0.2
4,817,825	-				-1.9
4,817,825	-				+1.1
4,817,825	-				+0.1
4,817,825	-				+0.1
4,817,825	-				-0.2
4,817,825	-				+0.6
4,817,825	-				-0.7
4,817,825	-				-0.5
4,817,825	-				+0.7
4,817,825	-				-0.9
4,817,825	-				+1.1
4,817,825	-				-0.2
4,817,825	-				+0.7
4,817,825	-				+1.1
4,817,826	+				+1.5
4,817,929	+				-0.3
4,817,929	+				+0.1
4,817,929	+				+0.1
4,817,930	-				+0.3
4,817,933	+				-0.5
4,817,934	-				+0.4
4,818,000	+		HGI48_RS21595	0.13	-0.5
4,818,001	-		HGI48_RS21595	0.13	+1.1
4,818,001	-		HGI48_RS21595	0.13	+0.3