Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS21135 and HGI48_RS21140 are separated by 4 nucleotides HGI48_RS21140 and HGI48_RS21145 are separated by 25 nucleotides HGI48_RS21145 and HGI48_RS21150 overlap by 4 nucleotides HGI48_RS21150 and HGI48_RS21155 are separated by 85 nucleotides HGI48_RS21155 and HGI48_RS21160 are separated by 156 nucleotides
HGI48_RS21135: HGI48_RS21135 - biliverdin-producing heme oxygenase, at 4,716,768 to 4,717,418
_RS21135
HGI48_RS21140: HGI48_RS21140 - SDR family oxidoreductase, at 4,717,423 to 4,718,217
_RS21140
HGI48_RS21145: HGI48_RS21145 - tetratricopeptide repeat protein, at 4,718,243 to 4,718,893
_RS21145
HGI48_RS21150: HGI48_RS21150 - hypothetical protein, at 4,718,890 to 4,719,240
_RS21150
HGI48_RS21155: HGI48_RS21155 - tRNA-Pro, at 4,719,326 to 4,719,402
_RS21155
HGI48_RS21160: HGI48_RS21160 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 4,719,559 to 4,721,241
_RS21160
Position (kb) 4718
4719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4717.283 kb on + strand, within HGI48_RS21135 at 4717.284 kb on - strand, within HGI48_RS21135 at 4717.352 kb on + strand, within HGI48_RS21135 at 4717.352 kb on + strand, within HGI48_RS21135 at 4717.352 kb on + strand, within HGI48_RS21135 at 4717.353 kb on - strand, within HGI48_RS21135 at 4717.384 kb on - strand at 4717.384 kb on - strand at 4717.417 kb on - strand at 4717.417 kb on - strand at 4717.430 kb on + strand at 4717.430 kb on + strand at 4717.438 kb on - strand at 4717.444 kb on - strand at 4717.444 kb on - strand at 4717.444 kb on - strand at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand at 4717.517 kb on + strand at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.519 kb on + strand, within HGI48_RS21140 at 4717.519 kb on + strand, within HGI48_RS21140 at 4717.520 kb on - strand, within HGI48_RS21140 at 4717.520 kb on - strand, within HGI48_RS21140 at 4717.520 kb on - strand, within HGI48_RS21140 at 4717.520 kb on - strand at 4717.520 kb on - strand, within HGI48_RS21140 at 4717.590 kb on + strand, within HGI48_RS21140 at 4717.590 kb on + strand, within HGI48_RS21140 at 4717.590 kb on + strand, within HGI48_RS21140 at 4717.591 kb on - strand, within HGI48_RS21140 at 4717.677 kb on + strand, within HGI48_RS21140 at 4717.753 kb on - strand, within HGI48_RS21140 at 4717.753 kb on - strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.871 kb on - strand at 4717.871 kb on - strand, within HGI48_RS21140 at 4717.932 kb on + strand, within HGI48_RS21140 at 4717.933 kb on - strand, within HGI48_RS21140 at 4717.933 kb on - strand, within HGI48_RS21140 at 4717.941 kb on + strand, within HGI48_RS21140 at 4717.941 kb on + strand, within HGI48_RS21140 at 4717.942 kb on - strand, within HGI48_RS21140 at 4717.942 kb on - strand, within HGI48_RS21140 at 4717.942 kb on - strand, within HGI48_RS21140 at 4717.947 kb on - strand at 4718.130 kb on + strand, within HGI48_RS21140 at 4718.130 kb on + strand at 4718.130 kb on + strand, within HGI48_RS21140 at 4718.131 kb on - strand, within HGI48_RS21140 at 4718.131 kb on - strand, within HGI48_RS21140 at 4718.262 kb on + strand at 4718.305 kb on - strand at 4718.314 kb on - strand, within HGI48_RS21145 at 4718.376 kb on - strand at 4718.376 kb on - strand, within HGI48_RS21145 at 4718.376 kb on - strand, within HGI48_RS21145 at 4718.395 kb on + strand, within HGI48_RS21145 at 4718.472 kb on + strand, within HGI48_RS21145 at 4718.472 kb on + strand, within HGI48_RS21145 at 4718.473 kb on - strand, within HGI48_RS21145 at 4718.473 kb on - strand, within HGI48_RS21145 at 4718.473 kb on - strand, within HGI48_RS21145 at 4718.473 kb on - strand, within HGI48_RS21145 at 4718.558 kb on - strand, within HGI48_RS21145 at 4718.558 kb on - strand, within HGI48_RS21145 at 4718.609 kb on + strand, within HGI48_RS21145 at 4718.609 kb on + strand, within HGI48_RS21145 at 4718.609 kb on + strand at 4718.609 kb on + strand, within HGI48_RS21145 at 4718.610 kb on - strand, within HGI48_RS21145 at 4718.610 kb on - strand, within HGI48_RS21145 at 4718.610 kb on - strand, within HGI48_RS21145 at 4718.610 kb on - strand at 4718.610 kb on - strand, within HGI48_RS21145 at 4718.630 kb on + strand, within HGI48_RS21145 at 4718.630 kb on + strand, within HGI48_RS21145 at 4718.630 kb on + strand, within HGI48_RS21145 at 4718.631 kb on - strand, within HGI48_RS21145 at 4718.631 kb on - strand, within HGI48_RS21145 at 4718.631 kb on - strand, within HGI48_RS21145 at 4718.631 kb on - strand, within HGI48_RS21145 at 4718.631 kb on - strand, within HGI48_RS21145 at 4718.634 kb on - strand, within HGI48_RS21145 at 4718.687 kb on + strand, within HGI48_RS21145 at 4718.687 kb on + strand, within HGI48_RS21145 at 4718.688 kb on - strand, within HGI48_RS21145 at 4718.709 kb on + strand, within HGI48_RS21145 at 4718.742 kb on - strand, within HGI48_RS21145 at 4718.742 kb on - strand, within HGI48_RS21145 at 4718.789 kb on + strand, within HGI48_RS21145 at 4718.790 kb on - strand, within HGI48_RS21145 at 4718.790 kb on - strand, within HGI48_RS21145 at 4718.790 kb on - strand, within HGI48_RS21145 at 4718.888 kb on + strand at 4718.888 kb on + strand at 4718.888 kb on + strand at 4718.888 kb on + strand at 4718.888 kb on + strand at 4718.889 kb on - strand at 4718.889 kb on - strand at 4718.891 kb on + strand at 4718.891 kb on + strand at 4718.892 kb on - strand at 4718.892 kb on - strand at 4718.892 kb on - strand at 4718.892 kb on - strand at 4719.000 kb on + strand, within HGI48_RS21150 at 4719.289 kb on + strand at 4719.320 kb on - strand at 4719.416 kb on + strand at 4719.416 kb on + strand at 4719.417 kb on - strand at 4719.420 kb on - strand at 4719.420 kb on - strand at 4719.420 kb on - strand at 4719.431 kb on - strand at 4719.481 kb on + strand at 4719.517 kb on + strand at 4719.517 kb on + strand at 4719.517 kb on + strand at 4719.517 kb on + strand at 4719.517 kb on + strand at 4719.517 kb on + strand at 4719.518 kb on - strand at 4719.518 kb on - strand at 4719.518 kb on - strand at 4719.518 kb on - strand at 4719.518 kb on - strand at 4719.519 kb on + strand at 4719.519 kb on + strand at 4719.520 kb on - strand at 4719.520 kb on - strand at 4719.520 kb on - strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.623 kb on + strand at 4719.623 kb on + strand at 4719.624 kb on - strand at 4719.737 kb on + strand, within HGI48_RS21160 at 4719.737 kb on + strand, within HGI48_RS21160 at 4719.737 kb on + strand, within HGI48_RS21160 at 4719.737 kb on + strand, within HGI48_RS21160 at 4719.737 kb on + strand, within HGI48_RS21160 at 4719.738 kb on - strand, within HGI48_RS21160 at 4719.738 kb on - strand, within HGI48_RS21160 at 4719.738 kb on - strand, within HGI48_RS21160 at 4719.818 kb on + strand, within HGI48_RS21160 at 4719.818 kb on + strand, within HGI48_RS21160 at 4719.818 kb on + strand, within HGI48_RS21160 at 4719.818 kb on + strand at 4719.819 kb on - strand, within HGI48_RS21160 at 4719.819 kb on - strand, within HGI48_RS21160 at 4719.854 kb on + strand, within HGI48_RS21160 at 4719.854 kb on + strand, within HGI48_RS21160 at 4719.854 kb on + strand, within HGI48_RS21160 at 4719.855 kb on - strand, within HGI48_RS21160 at 4719.855 kb on - strand, within HGI48_RS21160 at 4719.855 kb on - strand, within HGI48_RS21160
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,717,283 + HGI48_RS21135 0.79 -1.3 4,717,284 - HGI48_RS21135 0.79 +0.5 4,717,352 + HGI48_RS21135 0.90 +1.4 4,717,352 + HGI48_RS21135 0.90 +0.8 4,717,352 + HGI48_RS21135 0.90 -0.6 4,717,353 - HGI48_RS21135 0.90 -1.3 4,717,384 - -0.5 4,717,384 - +0.2 4,717,417 - +0.4 4,717,417 - -0.4 4,717,430 + +0.3 4,717,430 + -0.6 4,717,438 - +1.7 4,717,444 - -0.7 4,717,444 - +0.2 4,717,444 - +1.1 4,717,517 + HGI48_RS21140 0.12 -0.9 4,717,517 + HGI48_RS21140 0.12 -1.3 4,717,517 + HGI48_RS21140 0.12 +0.7 4,717,517 + HGI48_RS21140 0.12 +1.3 4,717,517 + HGI48_RS21140 0.12 +0.5 4,717,517 + +1.1 4,717,517 + HGI48_RS21140 0.12 +1.1 4,717,517 + +1.7 4,717,517 + +1.1 4,717,518 - HGI48_RS21140 0.12 -1.3 4,717,518 - HGI48_RS21140 0.12 -0.3 4,717,518 - HGI48_RS21140 0.12 -1.3 4,717,518 - HGI48_RS21140 0.12 +0.6 4,717,518 - HGI48_RS21140 0.12 +0.3 4,717,518 - HGI48_RS21140 0.12 -1.0 4,717,519 + HGI48_RS21140 0.12 +0.5 4,717,519 + HGI48_RS21140 0.12 -0.2 4,717,520 - HGI48_RS21140 0.12 -0.3 4,717,520 - HGI48_RS21140 0.12 +0.5 4,717,520 - HGI48_RS21140 0.12 -1.7 4,717,520 - +2.3 4,717,520 - HGI48_RS21140 0.12 +1.3 4,717,590 + HGI48_RS21140 0.21 +0.5 4,717,590 + HGI48_RS21140 0.21 -0.9 4,717,590 + HGI48_RS21140 0.21 +0.6 4,717,591 - HGI48_RS21140 0.21 -0.7 4,717,677 + HGI48_RS21140 0.32 +0.0 4,717,753 - HGI48_RS21140 0.42 +0.1 4,717,753 - HGI48_RS21140 0.42 +0.8 4,717,868 + HGI48_RS21140 0.56 +0.1 4,717,868 + HGI48_RS21140 0.56 +0.7 4,717,868 + HGI48_RS21140 0.56 +0.5 4,717,868 + HGI48_RS21140 0.56 +0.3 4,717,868 + HGI48_RS21140 0.56 -1.4 4,717,868 + HGI48_RS21140 0.56 -0.1 4,717,868 + HGI48_RS21140 0.56 +0.7 4,717,868 + HGI48_RS21140 0.56 +0.1 4,717,868 + HGI48_RS21140 0.56 +0.7 4,717,868 + HGI48_RS21140 0.56 -1.3 4,717,868 + HGI48_RS21140 0.56 +0.7 4,717,868 + HGI48_RS21140 0.56 +0.3 4,717,868 + HGI48_RS21140 0.56 -0.3 4,717,868 + HGI48_RS21140 0.56 -0.5 4,717,868 + HGI48_RS21140 0.56 +1.3 4,717,868 + HGI48_RS21140 0.56 -1.6 4,717,868 + HGI48_RS21140 0.56 +2.3 4,717,868 + HGI48_RS21140 0.56 -0.5 4,717,868 + HGI48_RS21140 0.56 +0.7 4,717,868 + HGI48_RS21140 0.56 -1.5 4,717,868 + HGI48_RS21140 0.56 +0.1 4,717,868 + HGI48_RS21140 0.56 -0.9 4,717,869 - HGI48_RS21140 0.56 +0.3 4,717,869 - HGI48_RS21140 0.56 +1.3 4,717,869 - HGI48_RS21140 0.56 +0.5 4,717,869 - HGI48_RS21140 0.56 +0.1 4,717,869 - HGI48_RS21140 0.56 -0.2 4,717,869 - HGI48_RS21140 0.56 +0.5 4,717,869 - +1.1 4,717,869 - HGI48_RS21140 0.56 +1.6 4,717,869 - HGI48_RS21140 0.56 -1.5 4,717,869 - HGI48_RS21140 0.56 +0.8 4,717,869 - HGI48_RS21140 0.56 -0.3 4,717,869 - HGI48_RS21140 0.56 +0.3 4,717,869 - HGI48_RS21140 0.56 +0.3 4,717,869 - HGI48_RS21140 0.56 -1.3 4,717,869 - HGI48_RS21140 0.56 +1.1 4,717,871 - -0.5 4,717,871 - HGI48_RS21140 0.56 +0.1 4,717,932 + HGI48_RS21140 0.64 -1.9 4,717,933 - HGI48_RS21140 0.64 +0.5 4,717,933 - HGI48_RS21140 0.64 -0.3 4,717,941 + HGI48_RS21140 0.65 +0.8 4,717,941 + HGI48_RS21140 0.65 +0.2 4,717,942 - HGI48_RS21140 0.65 -1.3 4,717,942 - HGI48_RS21140 0.65 +1.8 4,717,942 - HGI48_RS21140 0.65 +0.6 4,717,947 - -0.5 4,718,130 + HGI48_RS21140 0.89 +0.3 4,718,130 + +1.7 4,718,130 + HGI48_RS21140 0.89 -0.9 4,718,131 - HGI48_RS21140 0.89 +0.1 4,718,131 - HGI48_RS21140 0.89 -0.6 4,718,262 + +0.0 4,718,305 - -2.9 4,718,314 - HGI48_RS21145 0.11 -1.5 4,718,376 - +1.1 4,718,376 - HGI48_RS21145 0.20 -0.9 4,718,376 - HGI48_RS21145 0.20 +1.9 4,718,395 + HGI48_RS21145 0.23 -0.5 4,718,472 + HGI48_RS21145 0.35 +0.9 4,718,472 + HGI48_RS21145 0.35 -2.3 4,718,473 - HGI48_RS21145 0.35 +0.5 4,718,473 - HGI48_RS21145 0.35 -3.3 4,718,473 - HGI48_RS21145 0.35 -0.1 4,718,473 - HGI48_RS21145 0.35 +1.2 4,718,558 - HGI48_RS21145 0.48 -0.9 4,718,558 - HGI48_RS21145 0.48 +0.7 4,718,609 + HGI48_RS21145 0.56 -0.7 4,718,609 + HGI48_RS21145 0.56 +1.9 4,718,609 + +0.5 4,718,609 + HGI48_RS21145 0.56 -1.4 4,718,610 - HGI48_RS21145 0.56 +0.7 4,718,610 - HGI48_RS21145 0.56 -0.1 4,718,610 - HGI48_RS21145 0.56 +1.4 4,718,610 - +1.1 4,718,610 - HGI48_RS21145 0.56 -0.6 4,718,630 + HGI48_RS21145 0.59 -0.1 4,718,630 + HGI48_RS21145 0.59 +1.8 4,718,630 + HGI48_RS21145 0.59 -0.6 4,718,631 - HGI48_RS21145 0.60 -2.0 4,718,631 - HGI48_RS21145 0.60 +0.4 4,718,631 - HGI48_RS21145 0.60 -0.6 4,718,631 - HGI48_RS21145 0.60 +0.0 4,718,631 - HGI48_RS21145 0.60 +0.1 4,718,634 - HGI48_RS21145 0.60 -1.9 4,718,687 + HGI48_RS21145 0.68 -2.1 4,718,687 + HGI48_RS21145 0.68 -0.4 4,718,688 - HGI48_RS21145 0.68 -0.0 4,718,709 + HGI48_RS21145 0.72 -0.3 4,718,742 - HGI48_RS21145 0.77 -0.5 4,718,742 - HGI48_RS21145 0.77 -0.7 4,718,789 + HGI48_RS21145 0.84 +2.0 4,718,790 - HGI48_RS21145 0.84 +0.8 4,718,790 - HGI48_RS21145 0.84 -1.7 4,718,790 - HGI48_RS21145 0.84 +1.0 4,718,888 + +0.6 4,718,888 + -0.7 4,718,888 + +1.5 4,718,888 + +0.1 4,718,888 + +0.8 4,718,889 - +0.7 4,718,889 - -0.5 4,718,891 + +0.6 4,718,891 + -1.0 4,718,892 - +0.5 4,718,892 - -1.7 4,718,892 - -1.7 4,718,892 - -0.5 4,719,000 + HGI48_RS21150 0.31 +1.5 4,719,289 + +0.1 4,719,320 - +1.2 4,719,416 + -0.5 4,719,416 + -0.1 4,719,417 - -0.9 4,719,420 - +0.5 4,719,420 - +0.2 4,719,420 - -1.3 4,719,431 - -0.7 4,719,481 + -0.2 4,719,517 + -1.3 4,719,517 + -0.2 4,719,517 + -0.3 4,719,517 + -1.1 4,719,517 + +0.5 4,719,517 + +1.4 4,719,518 - -0.3 4,719,518 - -1.0 4,719,518 - +1.7 4,719,518 - -0.5 4,719,518 - -1.7 4,719,519 + +0.4 4,719,519 + +0.4 4,719,520 - +0.1 4,719,520 - +0.1 4,719,520 - -0.1 4,719,621 + -0.1 4,719,621 + +1.4 4,719,621 + -0.1 4,719,621 + +1.1 4,719,621 + -1.7 4,719,621 + -0.7 4,719,621 + +2.3 4,719,621 + -1.3 4,719,621 + -1.1 4,719,621 + -0.4 4,719,621 + -0.5 4,719,621 + +0.7 4,719,622 - +1.7 4,719,622 - +0.1 4,719,622 - -0.3 4,719,622 - +1.4 4,719,622 - +0.6 4,719,622 - +0.5 4,719,622 - -0.7 4,719,622 - +0.1 4,719,623 + -2.7 4,719,623 + +2.1 4,719,624 - -1.3 4,719,737 + HGI48_RS21160 0.11 -0.1 4,719,737 + HGI48_RS21160 0.11 +0.1 4,719,737 + HGI48_RS21160 0.11 -0.1 4,719,737 + HGI48_RS21160 0.11 +1.4 4,719,737 + HGI48_RS21160 0.11 +0.6 4,719,738 - HGI48_RS21160 0.11 -0.6 4,719,738 - HGI48_RS21160 0.11 -0.1 4,719,738 - HGI48_RS21160 0.11 +0.9 4,719,818 + HGI48_RS21160 0.15 -0.5 4,719,818 + HGI48_RS21160 0.15 +0.2 4,719,818 + HGI48_RS21160 0.15 -1.5 4,719,818 + +0.5 4,719,819 - HGI48_RS21160 0.15 +1.7 4,719,819 - HGI48_RS21160 0.15 -1.9 4,719,854 + HGI48_RS21160 0.18 -0.9 4,719,854 + HGI48_RS21160 0.18 +0.1 4,719,854 + HGI48_RS21160 0.18 -0.0 4,719,855 - HGI48_RS21160 0.18 -0.3 4,719,855 - HGI48_RS21160 0.18 -1.1 4,719,855 - HGI48_RS21160 0.18 +0.2
Or see this region's nucleotide sequence