Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19845

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,434,513	+		HGI48_RS19840	0.40	-0.5
4,434,513	+		HGI48_RS19840	0.40	-1.2
4,434,514	-		HGI48_RS19840	0.40	-2.8
4,434,514	-		HGI48_RS19840	0.40	-1.8
4,434,578	+		HGI48_RS19840	0.45	+0.5
4,434,578	+		HGI48_RS19840	0.45	+0.1
4,434,578	+				-0.5
4,434,578	+		HGI48_RS19840	0.45	+0.1
4,434,578	+		HGI48_RS19840	0.45	+0.8
4,434,578	+		HGI48_RS19840	0.45	-1.2
4,434,579	-		HGI48_RS19840	0.45	-0.9
4,434,579	-		HGI48_RS19840	0.45	-1.7
4,434,715	+		HGI48_RS19840	0.54	-0.5
4,434,728	+				+1.1
4,434,728	+		HGI48_RS19840	0.55	-2.1
4,434,729	-		HGI48_RS19840	0.55	+0.1
4,434,761	+		HGI48_RS19840	0.57	+0.3
4,434,764	+		HGI48_RS19840	0.58	+1.6
4,434,764	+				+0.1
4,434,765	-		HGI48_RS19840	0.58	+0.1
4,434,782	+		HGI48_RS19840	0.59	-1.7
4,434,782	+		HGI48_RS19840	0.59	+0.3
4,434,783	-		HGI48_RS19840	0.59	-1.5
4,434,797	+		HGI48_RS19840	0.60	-3.0
4,434,797	+		HGI48_RS19840	0.60	+0.1
4,434,812	+		HGI48_RS19840	0.61	-1.7
4,434,812	+		HGI48_RS19840	0.61	-2.1
4,434,813	-		HGI48_RS19840	0.61	-1.5
4,434,813	-		HGI48_RS19840	0.61	-1.9
4,434,868	+		HGI48_RS19840	0.65	+0.5
4,434,868	+		HGI48_RS19840	0.65	-0.7
4,434,869	-		HGI48_RS19840	0.65	-1.1
4,434,869	-		HGI48_RS19840	0.65	-1.9
4,434,869	-		HGI48_RS19840	0.65	-1.5
4,434,869	-		HGI48_RS19840	0.65	-0.2
4,434,888	+		HGI48_RS19840	0.66	-1.2
4,434,889	-		HGI48_RS19840	0.66	-0.7
4,434,889	-		HGI48_RS19840	0.66	-1.2
4,434,897	+				+0.1
4,434,897	+		HGI48_RS19840	0.67	-1.1
4,434,897	+		HGI48_RS19840	0.67	-1.2
4,435,057	-		HGI48_RS19840	0.78	-0.9
4,435,109	+		HGI48_RS19840	0.82	-1.4
4,435,109	+		HGI48_RS19840	0.82	+0.9
4,435,109	+				+0.5
4,435,120	+		HGI48_RS19840	0.82	-1.6
4,435,128	+		HGI48_RS19840	0.83	-0.7
4,435,128	+		HGI48_RS19840	0.83	-0.6
4,435,133	+		HGI48_RS19840	0.83	-0.2
4,435,133	+		HGI48_RS19840	0.83	+1.3
4,435,133	+		HGI48_RS19840	0.83	-0.2
4,435,134	-		HGI48_RS19840	0.83	-0.6
4,435,134	-		HGI48_RS19840	0.83	-1.5
4,435,134	-		HGI48_RS19840	0.83	-0.7
4,435,134	-		HGI48_RS19840	0.83	-2.0
4,435,134	-		HGI48_RS19840	0.83	-0.2
4,435,134	-		HGI48_RS19840	0.83	-1.1
4,435,134	-		HGI48_RS19840	0.83	+0.3
4,435,134	-		HGI48_RS19840	0.83	-0.9
4,435,151	+		HGI48_RS19840	0.85	-0.6
4,435,151	+		HGI48_RS19840	0.85	-1.7
4,435,152	-		HGI48_RS19840	0.85	-0.9
4,435,188	+		HGI48_RS19840	0.87	-0.4
4,435,189	-		HGI48_RS19840	0.87	-2.2
4,435,279	+				-0.5
4,435,306	+				-0.5
4,435,306	+				-1.6
4,435,306	+				-2.2
4,435,307	-				-1.2
4,435,307	-				-0.9
4,435,360	+				-0.9
4,435,360	+				+0.5
4,435,360	+				-0.5
4,435,360	+				+0.7
4,435,361	-				+0.8
4,435,361	-				-0.3
4,435,361	-				-0.1
4,435,361	-				-0.1
4,435,458	+				+1.1
4,435,600	+		HGI48_RS19845	0.16	-1.4
4,435,601	-		HGI48_RS19845	0.16	+0.2
4,435,601	-		HGI48_RS19845	0.16	-1.8
4,435,774	+		HGI48_RS19845	0.29	+0.4
4,435,774	+		HGI48_RS19845	0.29	-1.7
4,435,774	+				-0.5
4,435,774	+		HGI48_RS19845	0.29	-0.5
4,435,774	+		HGI48_RS19845	0.29	-1.9
4,435,775	-		HGI48_RS19845	0.29	-1.2
4,435,775	-		HGI48_RS19845	0.29	-1.0
4,435,775	-		HGI48_RS19845	0.29	+0.4
4,435,775	-				+0.5
4,435,782	+		HGI48_RS19845	0.30	-1.7
4,435,782	+		HGI48_RS19845	0.30	+0.3
4,435,782	+		HGI48_RS19845	0.30	+0.1
4,435,782	+		HGI48_RS19845	0.30	-2.3
4,435,782	+		HGI48_RS19845	0.30	+0.5
4,435,782	+		HGI48_RS19845	0.30	-0.0
4,435,783	-		HGI48_RS19845	0.30	-1.1
4,435,783	-		HGI48_RS19845	0.30	+2.2
4,435,783	-		HGI48_RS19845	0.30	-1.5
4,435,783	-		HGI48_RS19845	0.30	-0.9
4,435,783	-		HGI48_RS19845	0.30	+1.1
4,435,783	-				+1.1
4,435,783	-		HGI48_RS19845	0.30	-0.9
4,435,783	-		HGI48_RS19845	0.30	-0.1
4,435,783	-		HGI48_RS19845	0.30	-0.2
4,435,783	-		HGI48_RS19845	0.30	-1.7
4,435,783	-		HGI48_RS19845	0.30	+0.7
4,435,783	-		HGI48_RS19845	0.30	-0.3
4,435,783	-		HGI48_RS19845	0.30	-0.2
4,435,783	-		HGI48_RS19845	0.30	-1.2
4,435,833	+		HGI48_RS19845	0.34	-1.2
4,435,984	+		HGI48_RS19845	0.46	-0.5
4,436,016	+		HGI48_RS19845	0.48	-1.9
4,436,016	+		HGI48_RS19845	0.48	-0.7
4,436,017	-		HGI48_RS19845	0.48	-2.5
4,436,017	-		HGI48_RS19845	0.48	-0.5
4,436,034	+		HGI48_RS19845	0.49	-1.1
4,436,034	+				+0.1
4,436,034	+		HGI48_RS19845	0.49	-2.6
4,436,035	-		HGI48_RS19845	0.50	+0.1
4,436,035	-		HGI48_RS19845	0.50	-0.9
4,436,235	+		HGI48_RS19845	0.65	-0.2
4,436,235	+		HGI48_RS19845	0.65	-1.9
4,436,236	-		HGI48_RS19845	0.65	+0.5
4,436,247	+		HGI48_RS19845	0.66	+1.6
4,436,247	+		HGI48_RS19845	0.66	-1.2
4,436,247	+		HGI48_RS19845	0.66	+0.1
4,436,248	-		HGI48_RS19845	0.66	-0.9
4,436,248	-		HGI48_RS19845	0.66	-1.7
4,436,248	-				+0.5
4,436,277	+		HGI48_RS19845	0.68	-1.7
4,436,278	-		HGI48_RS19845	0.68	-2.5
4,436,303	-		HGI48_RS19845	0.70	-1.2
4,436,303	-		HGI48_RS19845	0.70	+0.9
4,436,537	-		HGI48_RS19845	0.89	-0.5
4,436,549	+		HGI48_RS19845	0.90	-1.5
4,436,674	+				-0.9
4,436,675	-				-0.7
4,436,675	-				-1.1
4,436,695	+				-0.9
4,436,695	+				-0.7
4,436,695	+				-0.0
4,436,696	-				-0.5
4,436,696	-				+0.1
4,436,696	-				-0.8
4,436,696	-				-0.7
4,436,698	+				-0.3
4,436,699	-				-0.9
4,436,707	-				-0.3
4,436,707	-				+2.5
4,436,707	-				-0.3
4,436,712	+				-0.8
4,436,841	-				-0.4
4,436,851	-				+0.1
4,436,851	-				-0.1
4,436,860	+				+0.3
4,436,888	+				+0.1
4,436,905	+		HGI48_RS19850	0.11	-0.7
4,436,994	-		HGI48_RS19850	0.15	-2.1
4,437,024	-		HGI48_RS19850	0.17	+0.4
4,437,089	-		HGI48_RS19850	0.20	-0.9
4,437,089	-		HGI48_RS19850	0.20	-2.1
4,437,338	+		HGI48_RS19850	0.33	+0.3
4,437,339	-				+1.7
4,437,477	-				+0.5