Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19090 and HGI48_RS19095 are separated by 51 nucleotides HGI48_RS19095 and HGI48_RS19100 are separated by 228 nucleotides HGI48_RS19100 and HGI48_RS19105 are separated by 567 nucleotides
HGI48_RS19090: HGI48_RS19090 - EF-P beta-lysylation protein EpmB, at 4,283,650 to 4,284,687
_RS19090
HGI48_RS19095: HGI48_RS19095 - DUF4156 domain-containing protein, at 4,284,739 to 4,285,083
_RS19095
HGI48_RS19100: HGI48_RS19100 - glucose-6-phosphate isomerase, at 4,285,312 to 4,286,961
_RS19100
HGI48_RS19105: HGI48_RS19105 - lysine-sensitive aspartokinase 3, at 4,287,529 to 4,288,893
_RS19105
Position (kb) 4285
4286
4287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4284.470 kb on + strand, within HGI48_RS19090 at 4284.497 kb on - strand, within HGI48_RS19090 at 4284.497 kb on - strand, within HGI48_RS19090 at 4284.750 kb on + strand at 4284.750 kb on + strand at 4284.750 kb on + strand at 4284.750 kb on + strand at 4284.750 kb on + strand at 4284.751 kb on - strand at 4284.751 kb on - strand at 4284.751 kb on - strand at 4284.751 kb on - strand at 4284.752 kb on + strand at 4284.752 kb on + strand at 4284.753 kb on - strand at 4284.753 kb on - strand at 4284.753 kb on - strand at 4284.796 kb on + strand, within HGI48_RS19095 at 4284.827 kb on + strand, within HGI48_RS19095 at 4284.828 kb on - strand, within HGI48_RS19095 at 4284.832 kb on + strand, within HGI48_RS19095 at 4284.832 kb on + strand, within HGI48_RS19095 at 4284.832 kb on + strand, within HGI48_RS19095 at 4284.832 kb on + strand, within HGI48_RS19095 at 4284.832 kb on + strand, within HGI48_RS19095 at 4284.833 kb on - strand, within HGI48_RS19095 at 4284.833 kb on - strand, within HGI48_RS19095 at 4284.976 kb on - strand, within HGI48_RS19095 at 4285.026 kb on + strand, within HGI48_RS19095 at 4285.026 kb on + strand at 4285.069 kb on + strand at 4285.069 kb on + strand at 4285.069 kb on + strand at 4285.070 kb on - strand at 4285.070 kb on - strand at 4285.070 kb on - strand at 4285.070 kb on - strand at 4285.071 kb on + strand at 4285.071 kb on + strand at 4285.072 kb on - strand at 4285.072 kb on - strand at 4285.072 kb on - strand at 4285.105 kb on + strand at 4285.151 kb on - strand at 4285.171 kb on + strand at 4285.172 kb on - strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.210 kb on + strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.211 kb on - strand at 4285.249 kb on - strand at 4285.291 kb on + strand at 4285.294 kb on + strand at 4285.295 kb on - strand at 4285.310 kb on - strand at 4285.354 kb on - strand at 4285.576 kb on + strand at 4285.576 kb on + strand, within HGI48_RS19100 at 4285.577 kb on - strand at 4285.577 kb on - strand, within HGI48_RS19100 at 4285.797 kb on - strand, within HGI48_RS19100 at 4285.797 kb on - strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.883 kb on + strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand, within HGI48_RS19100 at 4285.884 kb on - strand at 4285.887 kb on + strand, within HGI48_RS19100 at 4285.887 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.938 kb on + strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand at 4285.939 kb on - strand at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.939 kb on - strand, within HGI48_RS19100 at 4285.940 kb on + strand, within HGI48_RS19100 at 4285.941 kb on - strand, within HGI48_RS19100 at 4285.941 kb on - strand, within HGI48_RS19100 at 4285.941 kb on - strand, within HGI48_RS19100 at 4285.941 kb on - strand, within HGI48_RS19100 at 4286.474 kb on + strand, within HGI48_RS19100 at 4286.474 kb on + strand, within HGI48_RS19100 at 4286.474 kb on + strand at 4286.474 kb on + strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.475 kb on - strand, within HGI48_RS19100 at 4286.537 kb on + strand at 4286.805 kb on - strand at 4286.805 kb on - strand at 4286.967 kb on + strand at 4286.967 kb on + strand at 4286.968 kb on - strand at 4287.079 kb on + strand at 4287.080 kb on - strand at 4287.080 kb on - strand at 4287.080 kb on - strand at 4287.198 kb on - strand at 4287.198 kb on - strand at 4287.249 kb on - strand at 4287.306 kb on + strand at 4287.311 kb on + strand at 4287.311 kb on + strand at 4287.311 kb on + strand at 4287.311 kb on + strand at 4287.312 kb on - strand at 4287.312 kb on - strand at 4287.312 kb on - strand at 4287.320 kb on + strand at 4287.428 kb on + strand at 4287.428 kb on + strand at 4287.428 kb on + strand at 4287.429 kb on - strand at 4287.540 kb on + strand at 4287.559 kb on - strand at 4287.653 kb on + strand at 4287.653 kb on + strand at 4287.653 kb on + strand at 4287.657 kb on - strand at 4287.757 kb on + strand at 4287.757 kb on + strand, within HGI48_RS19105 at 4287.758 kb on - strand, within HGI48_RS19105 at 4287.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,284,470 + HGI48_RS19090 0.79 -3.5 4,284,497 - HGI48_RS19090 0.82 -1.9 4,284,497 - HGI48_RS19090 0.82 +0.6 4,284,750 + +0.5 4,284,750 + +0.3 4,284,750 + +0.3 4,284,750 + +1.2 4,284,750 + -0.8 4,284,751 - -1.0 4,284,751 - -1.2 4,284,751 - +0.8 4,284,751 - +3.1 4,284,752 + -1.4 4,284,752 + +1.2 4,284,753 - +0.5 4,284,753 - -2.0 4,284,753 - -0.8 4,284,796 + HGI48_RS19095 0.17 -0.6 4,284,827 + HGI48_RS19095 0.26 +0.4 4,284,828 - HGI48_RS19095 0.26 -2.1 4,284,832 + HGI48_RS19095 0.27 +0.8 4,284,832 + HGI48_RS19095 0.27 +1.5 4,284,832 + HGI48_RS19095 0.27 -1.0 4,284,832 + HGI48_RS19095 0.27 -0.3 4,284,832 + HGI48_RS19095 0.27 +0.8 4,284,833 - HGI48_RS19095 0.27 +0.0 4,284,833 - HGI48_RS19095 0.27 +0.0 4,284,976 - HGI48_RS19095 0.69 +0.2 4,285,026 + HGI48_RS19095 0.83 -1.3 4,285,026 + +0.0 4,285,069 + -1.6 4,285,069 + -0.5 4,285,069 + -0.6 4,285,070 - +0.0 4,285,070 - +1.0 4,285,070 - -2.6 4,285,070 - +0.2 4,285,071 + -2.3 4,285,071 + +0.4 4,285,072 - -2.1 4,285,072 - +0.0 4,285,072 - +0.8 4,285,105 + -1.0 4,285,151 - -0.2 4,285,171 + +0.0 4,285,172 - +0.2 4,285,210 + +1.0 4,285,210 + +0.0 4,285,210 + +0.5 4,285,210 + -0.6 4,285,210 + -2.3 4,285,210 + -0.2 4,285,210 + -0.6 4,285,210 + +0.2 4,285,210 + +0.8 4,285,211 - +0.3 4,285,211 - -0.8 4,285,211 - -0.3 4,285,211 - -2.0 4,285,211 - +1.0 4,285,211 - -0.5 4,285,211 - +1.6 4,285,211 - +1.3 4,285,211 - +0.2 4,285,211 - +0.4 4,285,211 - -0.7 4,285,211 - -1.3 4,285,249 - +0.8 4,285,291 + +1.0 4,285,294 + -1.3 4,285,295 - -1.0 4,285,310 - +3.4 4,285,354 - -0.4 4,285,576 + +2.3 4,285,576 + HGI48_RS19100 0.16 +2.3 4,285,577 - +2.0 4,285,577 - HGI48_RS19100 0.16 -0.4 4,285,797 - HGI48_RS19100 0.29 -0.7 4,285,797 - HGI48_RS19100 0.29 -0.6 4,285,883 + HGI48_RS19100 0.35 -0.7 4,285,883 + HGI48_RS19100 0.35 -0.8 4,285,883 + HGI48_RS19100 0.35 -0.6 4,285,883 + HGI48_RS19100 0.35 +0.5 4,285,883 + HGI48_RS19100 0.35 +0.0 4,285,883 + HGI48_RS19100 0.35 -1.0 4,285,883 + HGI48_RS19100 0.35 -0.8 4,285,884 - HGI48_RS19100 0.35 -0.6 4,285,884 - HGI48_RS19100 0.35 -0.8 4,285,884 - HGI48_RS19100 0.35 -1.7 4,285,884 - HGI48_RS19100 0.35 -0.8 4,285,884 - HGI48_RS19100 0.35 -0.4 4,285,884 - HGI48_RS19100 0.35 -1.8 4,285,884 - HGI48_RS19100 0.35 -0.4 4,285,884 - -0.6 4,285,887 + HGI48_RS19100 0.35 -1.0 4,285,887 + HGI48_RS19100 0.35 -1.2 4,285,938 + HGI48_RS19100 0.38 -1.8 4,285,938 + HGI48_RS19100 0.38 -1.3 4,285,938 + HGI48_RS19100 0.38 -1.0 4,285,938 + HGI48_RS19100 0.38 +0.0 4,285,938 + HGI48_RS19100 0.38 -0.2 4,285,938 + HGI48_RS19100 0.38 -1.1 4,285,938 + HGI48_RS19100 0.38 -1.3 4,285,938 + HGI48_RS19100 0.38 -1.3 4,285,939 - HGI48_RS19100 0.38 -0.3 4,285,939 - HGI48_RS19100 0.38 -1.6 4,285,939 - HGI48_RS19100 0.38 -1.0 4,285,939 - HGI48_RS19100 0.38 -0.5 4,285,939 - HGI48_RS19100 0.38 -1.4 4,285,939 - HGI48_RS19100 0.38 -1.3 4,285,939 - HGI48_RS19100 0.38 -2.4 4,285,939 - HGI48_RS19100 0.38 -2.0 4,285,939 - HGI48_RS19100 0.38 -1.0 4,285,939 - HGI48_RS19100 0.38 -1.0 4,285,939 - HGI48_RS19100 0.38 +0.0 4,285,939 - +1.0 4,285,939 - +4.4 4,285,939 - HGI48_RS19100 0.38 -0.7 4,285,939 - HGI48_RS19100 0.38 +0.0 4,285,939 - HGI48_RS19100 0.38 -0.6 4,285,939 - HGI48_RS19100 0.38 -1.4 4,285,939 - HGI48_RS19100 0.38 -2.1 4,285,939 - HGI48_RS19100 0.38 -1.0 4,285,940 + HGI48_RS19100 0.38 -0.6 4,285,941 - HGI48_RS19100 0.38 +1.6 4,285,941 - HGI48_RS19100 0.38 -1.4 4,285,941 - HGI48_RS19100 0.38 -1.6 4,285,941 - HGI48_RS19100 0.38 +2.4 4,286,474 + HGI48_RS19100 0.70 -0.6 4,286,474 + HGI48_RS19100 0.70 -1.8 4,286,474 + -0.6 4,286,474 + HGI48_RS19100 0.70 -2.7 4,286,475 - HGI48_RS19100 0.70 -0.2 4,286,475 - HGI48_RS19100 0.70 -0.1 4,286,475 - HGI48_RS19100 0.70 +0.0 4,286,475 - HGI48_RS19100 0.70 -0.9 4,286,475 - HGI48_RS19100 0.70 +0.0 4,286,475 - HGI48_RS19100 0.70 -1.4 4,286,475 - -0.6 4,286,475 - HGI48_RS19100 0.70 +1.0 4,286,475 - HGI48_RS19100 0.70 +0.3 4,286,537 + +0.0 4,286,805 - -0.4 4,286,805 - +1.4 4,286,967 + +0.4 4,286,967 + +0.4 4,286,968 - -2.1 4,287,079 + -0.7 4,287,080 - +0.2 4,287,080 - +1.9 4,287,080 - +0.4 4,287,198 - -0.0 4,287,198 - -0.8 4,287,249 - +0.2 4,287,306 + +0.8 4,287,311 + -0.6 4,287,311 + +0.4 4,287,311 + -0.3 4,287,311 + -1.3 4,287,312 - -1.1 4,287,312 - -0.8 4,287,312 - -0.7 4,287,320 + +0.7 4,287,428 + -0.1 4,287,428 + -0.3 4,287,428 + +0.7 4,287,429 - -0.3 4,287,540 + -1.3 4,287,559 - +1.1 4,287,653 + -1.1 4,287,653 + -1.0 4,287,653 + +0.5 4,287,657 - +0.3 4,287,757 + +0.4 4,287,757 + HGI48_RS19105 0.17 -0.4 4,287,758 - HGI48_RS19105 0.17 +1.4 4,287,814 - -0.6
Or see this region's nucleotide sequence