Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18920

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,238,068	+				-2.3
4,238,069	-				-1.3
4,238,069	-				-0.4
4,238,282	+		HGI48_RS18910	0.34	-0.3
4,238,283	-		HGI48_RS18910	0.34	+0.8
4,238,283	-		HGI48_RS18910	0.34	+0.8
4,238,364	+				+0.4
4,238,364	+		HGI48_RS18910	0.46	-0.2
4,238,365	-		HGI48_RS18910	0.46	+1.7
4,238,365	-		HGI48_RS18910	0.46	+0.5
4,238,365	-		HGI48_RS18910	0.46	-0.2
4,238,365	-		HGI48_RS18910	0.46	-0.1
4,238,365	-		HGI48_RS18910	0.46	+0.3
4,238,802	+		HGI48_RS18915	0.32	-0.1
4,238,802	+		HGI48_RS18915	0.32	-1.3
4,238,802	+		HGI48_RS18915	0.32	-1.0
4,238,802	+		HGI48_RS18915	0.32	-1.0
4,238,802	+				+1.0
4,238,803	-		HGI48_RS18915	0.32	+0.0
4,238,803	-				+1.0
4,238,803	-		HGI48_RS18915	0.32	+1.4
4,238,803	-		HGI48_RS18915	0.32	-2.6
4,238,803	-		HGI48_RS18915	0.32	-0.3
4,238,803	-				+0.4
4,238,803	-		HGI48_RS18915	0.32	+1.0
4,238,805	+		HGI48_RS18915	0.33	+0.3
4,238,805	+		HGI48_RS18915	0.33	-2.5
4,238,873	+		HGI48_RS18915	0.64	-1.0
4,238,904	+		HGI48_RS18915	0.79	+0.3
4,238,904	+		HGI48_RS18915	0.79	+1.4
4,238,904	+		HGI48_RS18915	0.79	-1.1
4,238,904	+		HGI48_RS18915	0.79	+0.0
4,238,904	+		HGI48_RS18915	0.79	+0.6
4,238,904	+		HGI48_RS18915	0.79	-0.5
4,238,904	+		HGI48_RS18915	0.79	+2.0
4,238,904	+		HGI48_RS18915	0.79	-1.6
4,238,904	+		HGI48_RS18915	0.79	-1.0
4,238,905	-		HGI48_RS18915	0.79	-0.8
4,238,905	-		HGI48_RS18915	0.79	-1.3
4,238,911	-		HGI48_RS18915	0.82	-0.8
4,238,911	-		HGI48_RS18915	0.82	-0.8
4,239,070	+				-2.5
4,239,070	+				-0.8
4,239,281	-		HGI48_RS18920	0.15	-2.0
4,239,355	+		HGI48_RS18920	0.20	+0.6
4,239,355	+		HGI48_RS18920	0.20	-2.2
4,239,355	+		HGI48_RS18920	0.20	+1.0
4,239,355	+		HGI48_RS18920	0.20	-0.8
4,239,356	-		HGI48_RS18920	0.20	+1.0
4,239,511	+		HGI48_RS18920	0.30	-0.2
4,239,805	+		HGI48_RS18920	0.48	+0.0
4,239,806	-		HGI48_RS18920	0.48	-0.8
4,239,910	+		HGI48_RS18920	0.55	-0.3
4,239,922	+		HGI48_RS18920	0.56	+0.4
4,239,922	+		HGI48_RS18920	0.56	-1.0
4,239,922	+		HGI48_RS18920	0.56	+1.0
4,239,922	+		HGI48_RS18920	0.56	-0.6
4,239,923	-		HGI48_RS18920	0.56	+0.8
4,239,973	+		HGI48_RS18920	0.59	-0.7
4,239,973	+		HGI48_RS18920	0.59	-1.7
4,239,974	-		HGI48_RS18920	0.59	+0.0
4,240,073	-		HGI48_RS18920	0.65	+0.1
4,240,080	-		HGI48_RS18920	0.66	+0.3
4,240,232	+		HGI48_RS18920	0.75	-0.2
4,240,235	+		HGI48_RS18920	0.76	+1.9
4,240,235	+		HGI48_RS18920	0.76	+0.7
4,240,235	+		HGI48_RS18920	0.76	-1.3
4,240,236	-		HGI48_RS18920	0.76	-2.1
4,240,236	-		HGI48_RS18920	0.76	-0.2
4,240,236	-		HGI48_RS18920	0.76	-0.4
4,240,236	-		HGI48_RS18920	0.76	-0.4
4,240,236	-		HGI48_RS18920	0.76	-1.6
4,240,299	-		HGI48_RS18920	0.80	-0.9
4,240,310	+		HGI48_RS18920	0.80	-1.6
4,240,315	+				+0.4
4,240,315	+		HGI48_RS18920	0.81	-0.6
4,240,315	+		HGI48_RS18920	0.81	+0.6
4,240,316	-		HGI48_RS18920	0.81	-2.0
4,240,316	-		HGI48_RS18920	0.81	-0.6
4,240,316	-		HGI48_RS18920	0.81	+0.0
4,240,316	-		HGI48_RS18920	0.81	+0.4
4,240,327	+		HGI48_RS18920	0.82	+0.6
4,240,328	-		HGI48_RS18920	0.82	-0.3
4,240,357	+		HGI48_RS18920	0.83	-0.6
4,240,358	-		HGI48_RS18920	0.83	-0.2
4,240,358	-		HGI48_RS18920	0.83	+0.4
4,240,358	-		HGI48_RS18920	0.83	-1.3
4,240,358	-		HGI48_RS18920	0.83	-0.6
4,240,358	-		HGI48_RS18920	0.83	+0.4
4,240,558	+				-1.0
4,240,558	+				-1.0
4,240,639	-				+1.0
4,240,674	+				-1.3
4,240,678	+				+0.0
4,240,678	+				-2.0
4,240,679	-				+1.3
4,240,679	-				-1.0
4,240,679	-				-0.1
4,240,679	-				+0.1
4,240,679	-				+0.7
4,240,679	-				+0.2
4,240,692	-				+0.4
4,240,692	-				-1.6
4,240,696	-				+0.4
4,240,696	-				-2.0
4,240,696	-				-1.3
4,240,696	-				+1.0
4,240,696	-				+0.0
4,240,696	-				-0.5
4,240,751	+				-0.9
4,240,820	-				+1.8
4,240,870	+		HGI48_RS18925	0.11	-1.3
4,240,871	-		HGI48_RS18925	0.12	-0.1
4,240,871	-				-0.6
4,240,936	+		HGI48_RS18925	0.16	+0.4
4,240,937	-		HGI48_RS18925	0.16	+0.6
4,240,937	-				+0.0
4,240,996	+				+1.0
4,240,996	+		HGI48_RS18925	0.20	-0.5
4,241,034	+		HGI48_RS18925	0.23	-1.3
4,241,035	-		HGI48_RS18925	0.23	+0.3
4,241,035	-		HGI48_RS18925	0.23	-0.2
4,241,056	+		HGI48_RS18925	0.24	-1.6
4,241,057	-		HGI48_RS18925	0.24	+0.4
4,241,057	-		HGI48_RS18925	0.24	-0.6
4,241,095	+		HGI48_RS18925	0.27	-0.6
4,241,096	-		HGI48_RS18925	0.27	-0.6
4,241,096	-		HGI48_RS18925	0.27	-1.3
4,241,096	-		HGI48_RS18925	0.27	+0.2
4,241,096	-		HGI48_RS18925	0.27	+0.0
4,241,266	+		HGI48_RS18925	0.39	+0.0
4,241,266	+		HGI48_RS18925	0.39	+0.6
4,241,266	+		HGI48_RS18925	0.39	+1.1
4,241,267	-		HGI48_RS18925	0.39	-0.4
4,241,267	-				-0.6
4,241,267	-		HGI48_RS18925	0.39	-0.9
4,241,314	+				+0.4
4,241,314	+		HGI48_RS18925	0.42	-0.6
4,241,315	-		HGI48_RS18925	0.42	+1.4
4,241,315	-		HGI48_RS18925	0.42	+0.7
4,241,315	-		HGI48_RS18925	0.42	-0.6
4,241,315	-		HGI48_RS18925	0.42	-0.3
4,241,315	-		HGI48_RS18925	0.42	-1.2
4,241,470	+		HGI48_RS18925	0.53	+0.0
4,241,470	+		HGI48_RS18925	0.53	+1.3
4,241,470	+		HGI48_RS18925	0.53	-0.8
4,241,471	-		HGI48_RS18925	0.53	+0.2
4,241,494	+		HGI48_RS18925	0.55	-1.5
4,241,495	-		HGI48_RS18925	0.55	+0.0