Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,910,409	+		HGI48_RS17465	0.22	-0.4
3,910,409	+		HGI48_RS17465	0.22	+0.1
3,910,409	+		HGI48_RS17465	0.22	+0.3
3,910,409	+		HGI48_RS17465	0.22	-2.2
3,910,409	+		HGI48_RS17465	0.22	+0.5
3,910,410	-		HGI48_RS17465	0.22	+0.4
3,910,410	-		HGI48_RS17465	0.22	+0.9
3,910,410	-		HGI48_RS17465	0.22	+3.1
3,910,410	-		HGI48_RS17465	0.22	-0.1
3,910,412	+		HGI48_RS17465	0.22	-0.5
3,910,413	-		HGI48_RS17465	0.22	-0.9
3,910,445	-		HGI48_RS17465	0.24	+1.2
3,910,446	+		HGI48_RS17465	0.25	+0.4
3,910,446	+		HGI48_RS17465	0.25	+0.2
3,910,447	-		HGI48_RS17465	0.25	+0.3
3,910,447	-		HGI48_RS17465	0.25	+0.2
3,910,447	-		HGI48_RS17465	0.25	+0.3
3,910,460	-		HGI48_RS17465	0.26	-0.3
3,910,628	+		HGI48_RS17465	0.39	-1.1
3,910,629	-		HGI48_RS17465	0.39	-0.3
3,910,665	+		HGI48_RS17465	0.42	-0.4
3,910,666	-		HGI48_RS17465	0.42	-1.9
3,910,666	-		HGI48_RS17465	0.42	-0.1
3,910,710	+		HGI48_RS17465	0.45	-0.3
3,910,710	+		HGI48_RS17465	0.45	+0.5
3,910,710	+		HGI48_RS17465	0.45	+0.4
3,910,711	-		HGI48_RS17465	0.45	+0.1
3,910,711	-		HGI48_RS17465	0.45	+0.2
3,910,737	+		HGI48_RS17465	0.48	+1.9
3,910,738	-		HGI48_RS17465	0.48	-0.3
3,910,738	-		HGI48_RS17465	0.48	+0.9
3,910,787	+		HGI48_RS17465	0.52	-0.2
3,910,787	+		HGI48_RS17465	0.52	-0.6
3,910,787	+		HGI48_RS17465	0.52	+0.7
3,910,788	-		HGI48_RS17465	0.52	-0.6
3,910,903	+		HGI48_RS17465	0.61	-0.2
3,910,903	+		HGI48_RS17465	0.61	+0.4
3,910,903	+		HGI48_RS17465	0.61	-0.3
3,910,903	+		HGI48_RS17465	0.61	-0.3
3,910,903	+		HGI48_RS17465	0.61	-2.4
3,910,903	+		HGI48_RS17465	0.61	+0.7
3,910,904	-		HGI48_RS17465	0.61	-0.8
3,910,904	-		HGI48_RS17465	0.61	+1.7
3,910,904	-		HGI48_RS17465	0.61	-0.6
3,910,904	-		HGI48_RS17465	0.61	-2.0
3,910,961	-		HGI48_RS17465	0.65	-0.3
3,911,056	-		HGI48_RS17465	0.73	+0.4
3,911,100	-		HGI48_RS17465	0.76	-0.4
3,911,166	-		HGI48_RS17465	0.81	+0.3
3,911,166	-		HGI48_RS17465	0.81	-0.9
3,911,303	-				-0.6
3,911,303	-				-0.6
3,911,317	+				+0.7
3,911,461	+				-1.6
3,911,462	-				-0.4
3,911,489	+				-1.4
3,911,602	+		HGI48_RS17470	0.20	-0.4
3,911,613	+		HGI48_RS17470	0.22	+1.5
3,911,613	+				+2.7
3,911,613	+		HGI48_RS17470	0.22	-0.3
3,911,613	+		HGI48_RS17470	0.22	+0.1
3,911,614	-		HGI48_RS17470	0.22	-0.9
3,911,614	-		HGI48_RS17470	0.22	+0.3
3,911,614	-		HGI48_RS17470	0.22	+0.6
3,911,614	-		HGI48_RS17470	0.22	-1.4
3,911,615	+		HGI48_RS17470	0.22	+0.6
3,911,615	+		HGI48_RS17470	0.22	+0.5
3,911,615	+		HGI48_RS17470	0.22	-1.1
3,911,616	-				+0.9
3,911,801	+		HGI48_RS17470	0.40	+0.4
3,911,843	-		HGI48_RS17470	0.45	-0.5
3,911,843	-		HGI48_RS17470	0.45	-2.2
3,911,855	+		HGI48_RS17470	0.46	+1.1
3,911,856	-		HGI48_RS17470	0.46	-0.1
3,911,856	-		HGI48_RS17470	0.46	+1.7
3,911,856	-		HGI48_RS17470	0.46	+0.5
3,911,856	-				+4.3
3,911,897	+		HGI48_RS17470	0.50	+0.0
3,911,897	+				+0.9
3,911,897	+				+1.5
3,911,900	-		HGI48_RS17470	0.50	-0.1
3,911,900	-		HGI48_RS17470	0.50	-2.2
3,911,944	-		HGI48_RS17470	0.55	-0.3
3,911,944	-		HGI48_RS17470	0.55	-0.2
3,912,053	-		HGI48_RS17470	0.65	-1.6
3,912,053	-		HGI48_RS17470	0.65	-0.5
3,912,057	+		HGI48_RS17470	0.66	+0.5
3,912,057	+		HGI48_RS17470	0.66	-0.9
3,912,057	+		HGI48_RS17470	0.66	+0.3
3,912,057	+		HGI48_RS17470	0.66	-1.6
3,912,057	+		HGI48_RS17470	0.66	+0.9
3,912,058	-		HGI48_RS17470	0.66	+0.9
3,912,058	-		HGI48_RS17470	0.66	-1.6
3,912,058	-		HGI48_RS17470	0.66	+0.6
3,912,105	+		HGI48_RS17470	0.71	-0.4
3,912,105	+		HGI48_RS17470	0.71	+0.4
3,912,105	+		HGI48_RS17470	0.71	-0.4
3,912,106	-		HGI48_RS17470	0.71	-2.5
3,912,106	-		HGI48_RS17470	0.71	+0.1
3,912,148	+		HGI48_RS17470	0.75	+0.7
3,912,148	+		HGI48_RS17470	0.75	+1.2
3,912,148	+		HGI48_RS17470	0.75	-1.3
3,912,149	-		HGI48_RS17470	0.75	-0.1
3,912,149	-		HGI48_RS17470	0.75	-1.6
3,912,252	+		HGI48_RS17470	0.85	-0.8
3,912,285	+		HGI48_RS17470	0.89	+0.6
3,912,286	-		HGI48_RS17470	0.89	-1.6
3,912,359	+				-0.3
3,912,359	+				+0.5
3,912,359	+				+0.6
3,912,360	-				+0.5
3,912,360	-				+0.0
3,912,363	+				-1.5
3,912,363	+				+3.1
3,912,364	-				-1.1
3,912,364	-				-2.1
3,912,397	-				-0.6
3,912,397	-				+1.1
3,912,418	+				-0.6
3,912,418	+				-0.1
3,912,418	+				-1.1
3,912,419	-				+0.1
3,912,419	-				+0.2
3,912,419	-				+0.5
3,912,419	-				-0.8
3,912,419	-				-0.6
3,912,419	-				-2.3
3,912,462	+				+1.2
3,912,463	-				-1.4
3,912,471	+				+0.3
3,912,471	+				-0.8
3,912,472	-				+0.8
3,912,474	+				+1.3
3,912,474	+				+0.5
3,912,474	+				+1.7
3,912,475	-				-0.1
3,912,475	-				-0.6
3,912,475	-				+0.9
3,912,475	-				-0.6
3,912,475	-				+0.2
3,912,475	-				+0.2
3,912,497	+				+0.2
3,912,522	+				-1.4
3,912,522	+				-0.3
3,912,523	-				-0.5
3,912,649	+		HGI48_RS17475	0.22	-1.6
3,912,659	-		HGI48_RS17475	0.22	-2.4
3,912,659	-		HGI48_RS17475	0.22	-1.0
3,912,737	-		HGI48_RS17475	0.30	+1.2
3,912,747	-		HGI48_RS17475	0.31	-0.5
3,912,847	+		HGI48_RS17475	0.40	-0.2
3,912,847	+		HGI48_RS17475	0.40	-0.5
3,912,847	+				+2.9
3,912,863	+		HGI48_RS17475	0.42	+1.3
3,912,863	+		HGI48_RS17475	0.42	+0.9
3,912,863	+		HGI48_RS17475	0.42	-1.1
3,912,863	+		HGI48_RS17475	0.42	-0.3
3,912,863	+		HGI48_RS17475	0.42	+0.5
3,912,864	-		HGI48_RS17475	0.42	-0.5
3,912,864	-		HGI48_RS17475	0.42	+0.5
3,912,864	-		HGI48_RS17475	0.42	-0.3
3,912,864	-		HGI48_RS17475	0.42	-1.6
3,912,864	-		HGI48_RS17475	0.42	-0.2
3,912,864	-		HGI48_RS17475	0.42	+0.5
3,912,875	-		HGI48_RS17475	0.43	-2.6
3,912,890	-		HGI48_RS17475	0.44	-1.6
3,912,942	+		HGI48_RS17475	0.49	+1.9
3,912,942	+		HGI48_RS17475	0.49	-0.1
3,912,943	-		HGI48_RS17475	0.49	-0.4
3,913,002	+		HGI48_RS17475	0.55	+0.4
3,913,002	+		HGI48_RS17475	0.55	+0.3
3,913,003	-				+0.9
3,913,012	+		HGI48_RS17475	0.56	-0.9
3,913,013	-		HGI48_RS17475	0.56	+1.8
3,913,029	+		HGI48_RS17475	0.57	-0.1
3,913,029	+		HGI48_RS17475	0.57	-1.2
3,913,030	-				+0.4
3,913,030	-		HGI48_RS17475	0.57	+0.4
3,913,030	-		HGI48_RS17475	0.57	+0.5
3,913,030	-		HGI48_RS17475	0.57	+1.3
3,913,030	-		HGI48_RS17475	0.57	-0.6
3,913,030	-		HGI48_RS17475	0.57	-0.1
3,913,030	-		HGI48_RS17475	0.57	-0.1
3,913,030	-		HGI48_RS17475	0.57	-1.1
3,913,030	-		HGI48_RS17475	0.57	-0.2
3,913,030	-		HGI48_RS17475	0.57	-0.1
3,913,034	+		HGI48_RS17475	0.58	-0.4
3,913,035	-		HGI48_RS17475	0.58	-0.2
3,913,035	-		HGI48_RS17475	0.58	-0.1
3,913,035	-		HGI48_RS17475	0.58	+0.4
3,913,048	+		HGI48_RS17475	0.59	-0.4
3,913,048	+		HGI48_RS17475	0.59	-1.4
3,913,049	-		HGI48_RS17475	0.59	-1.4
3,913,049	-				+0.9
3,913,070	+		HGI48_RS17475	0.61	+0.2
3,913,071	-		HGI48_RS17475	0.61	+0.3
3,913,192	+		HGI48_RS17475	0.72	-0.1
3,913,192	+		HGI48_RS17475	0.72	+1.5
3,913,192	+				+0.9
3,913,193	-				-0.6
3,913,225	+		HGI48_RS17475	0.75	-0.5
3,913,245	+		HGI48_RS17475	0.77	-0.3
3,913,267	+		HGI48_RS17475	0.79	+0.3
3,913,268	-				+2.5
3,913,268	-		HGI48_RS17475	0.79	+0.8
3,913,390	-				+1.9