Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15295

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,437,478	+		HGI48_RS15285	0.54	+1.2
3,437,478	+		HGI48_RS15285	0.54	-1.1
3,437,478	+		HGI48_RS15285	0.54	-0.8
3,437,583	+		HGI48_RS15285	0.70	-0.6
3,437,584	-		HGI48_RS15285	0.71	-0.4
3,437,772	+				+1.5
3,437,773	-				-0.3
3,437,776	+				-1.1
3,437,879	+				-0.9
3,437,879	+				-0.4
3,437,879	+				+0.0
3,437,879	+				-0.4
3,437,879	+				-0.6
3,437,879	+				-0.6
3,437,879	+				-0.6
3,437,880	-				+0.3
3,437,880	-				+1.1
3,437,880	-				-0.6
3,437,880	-				-0.3
3,437,880	-				-0.8
3,437,881	+				-1.4
3,437,881	+				-1.0
3,437,881	+				-2.4
3,437,881	+				+0.4
3,437,882	-				-1.3
3,437,882	-				+0.6
3,437,882	-				+0.4
3,437,882	-				-2.3
3,437,908	+				+1.4
3,437,909	-				-1.8
3,437,934	+				-0.7
3,437,934	+				+0.3
3,437,934	+				+1.0
3,437,935	-				+0.2
3,437,935	-				-0.3
3,437,967	+		HGI48_RS15290	0.14	+0.3
3,437,967	+		HGI48_RS15290	0.14	-0.5
3,437,968	-		HGI48_RS15290	0.14	-0.7
3,437,968	-		HGI48_RS15290	0.14	-1.3
3,438,026	+		HGI48_RS15290	0.27	-0.4
3,438,026	+		HGI48_RS15290	0.27	-0.0
3,438,026	+		HGI48_RS15290	0.27	-1.1
3,438,026	+		HGI48_RS15290	0.27	+0.7
3,438,026	+		HGI48_RS15290	0.27	+0.2
3,438,026	+		HGI48_RS15290	0.27	+0.2
3,438,026	+		HGI48_RS15290	0.27	-1.6
3,438,026	+		HGI48_RS15290	0.27	+0.4
3,438,027	-		HGI48_RS15290	0.27	+0.3
3,438,027	-		HGI48_RS15290	0.27	-1.6
3,438,027	-		HGI48_RS15290	0.27	-0.6
3,438,027	-		HGI48_RS15290	0.27	-1.6
3,438,028	+		HGI48_RS15290	0.27	-1.6
3,438,028	+		HGI48_RS15290	0.27	+0.7
3,438,028	+		HGI48_RS15290	0.27	+1.2
3,438,028	+		HGI48_RS15290	0.27	+0.1
3,438,028	+		HGI48_RS15290	0.27	+0.2
3,438,029	-		HGI48_RS15290	0.28	-0.1
3,438,029	-		HGI48_RS15290	0.28	+0.4
3,438,092	+		HGI48_RS15290	0.41	+0.3
3,438,092	+		HGI48_RS15290	0.41	-0.3
3,438,092	+		HGI48_RS15290	0.41	-1.1
3,438,092	+		HGI48_RS15290	0.41	+2.4
3,438,092	+		HGI48_RS15290	0.41	+0.0
3,438,092	+		HGI48_RS15290	0.41	+0.0
3,438,092	+		HGI48_RS15290	0.41	-1.6
3,438,092	+		HGI48_RS15290	0.41	-0.5
3,438,093	-		HGI48_RS15290	0.42	+0.3
3,438,093	-		HGI48_RS15290	0.42	-0.7
3,438,093	-		HGI48_RS15290	0.42	-0.1
3,438,093	-		HGI48_RS15290	0.42	-0.3
3,438,093	-		HGI48_RS15290	0.42	-0.8
3,438,093	-		HGI48_RS15290	0.42	+0.1
3,438,093	-		HGI48_RS15290	0.42	-0.2
3,438,240	+				-0.8
3,438,241	-		HGI48_RS15290	0.74	+1.1
3,438,241	-		HGI48_RS15290	0.74	-0.7
3,438,282	+		HGI48_RS15290	0.83	-0.8
3,438,282	+		HGI48_RS15290	0.83	-1.3
3,438,328	+				-0.7
3,438,359	-				+2.7
3,438,425	+				+1.4
3,438,425	+				-0.7
3,438,425	+				-0.5
3,438,425	+				-1.5
3,438,426	-				+1.1
3,438,426	-				-0.3
3,438,426	-				-1.6
3,438,426	-				+0.5
3,438,426	-				+1.0
3,438,553	+				-1.3
3,438,553	+				-1.6
3,438,553	+				+0.3
3,438,554	-				-0.3
3,438,714	-		HGI48_RS15295	0.14	-0.4
3,438,909	-		HGI48_RS15295	0.23	-1.4
3,438,911	+				-0.3
3,438,912	-		HGI48_RS15295	0.23	-0.6
3,438,980	+		HGI48_RS15295	0.26	-0.3
3,439,047	-		HGI48_RS15295	0.30	+0.7
3,439,075	+		HGI48_RS15295	0.31	+0.3
3,439,170	-		HGI48_RS15295	0.36	-0.6
3,439,193	+		HGI48_RS15295	0.37	-0.8
3,440,027	-		HGI48_RS15295	0.77	+0.7
3,440,187	+				+0.7
3,440,386	+				-1.6
3,440,387	-				+0.5
3,440,387	-				-0.2
3,440,387	-				-1.8
3,440,444	-				-1.8
3,440,444	-				-2.1
3,440,536	+				-1.5
3,440,536	+				+1.0
3,440,537	-				-1.6
3,440,577	+				-1.3
3,440,577	+				-0.6
3,440,591	+				+0.9
3,440,592	-				+0.4
3,440,594	+				+0.3
3,440,594	+				-1.2
3,440,595	-				+0.2
3,440,595	-				+0.0
3,440,595	-				+0.2
3,440,595	-				+0.7
3,440,619	+				+0.1
3,440,637	-				+1.5
3,440,642	+				+0.4
3,440,642	+				-0.3
3,440,642	+				-0.6
3,440,656	+				-0.3
3,440,656	+				+1.5
3,440,656	+				-1.0
3,440,656	+				+1.1
3,440,656	+				+0.2
3,440,657	-				+0.0
3,440,657	-				-1.8
3,440,657	-				+0.7
3,440,657	-				-1.1
3,440,664	-				+1.4
3,440,740	+		HGI48_RS15300	0.21	+1.1
3,440,740	+		HGI48_RS15300	0.21	-1.1
3,440,741	-		HGI48_RS15300	0.21	+0.2
3,440,741	-		HGI48_RS15300	0.21	+0.4
3,440,741	-				-0.8
3,440,741	-		HGI48_RS15300	0.21	+0.2
3,440,741	-				+0.2
3,440,744	+		HGI48_RS15300	0.22	+0.7
3,440,744	+		HGI48_RS15300	0.22	-1.6
3,440,745	-		HGI48_RS15300	0.22	-2.3
3,440,745	-		HGI48_RS15300	0.22	-0.3
3,440,745	-				+1.3
3,440,745	-		HGI48_RS15300	0.22	-0.4
3,440,957	+		HGI48_RS15300	0.70	+0.7
3,441,150	+				+1.1
3,441,150	+				-1.6
3,441,150	+				-0.2
3,441,150	+				-1.6
3,441,150	+				-0.5
3,441,151	-				-0.8
3,441,151	-				+0.4
3,441,168	+				+1.1
3,441,168	+				-1.6
3,441,169	-				+0.7
3,441,169	-				+3.5
3,441,169	-				-0.6
3,441,169	-				+0.0
3,441,169	-				-0.3
3,441,388	+		HGI48_RS15305	0.13	+0.3
3,441,388	+		HGI48_RS15305	0.13	-3.2
3,441,392	+		HGI48_RS15305	0.13	-0.3
3,441,392	+		HGI48_RS15305	0.13	-0.3
3,441,393	-				+2.0
3,441,453	+		HGI48_RS15305	0.16	-0.2
3,441,453	+		HGI48_RS15305	0.16	-0.1
3,441,459	-		HGI48_RS15305	0.16	-0.7
3,441,459	-		HGI48_RS15305	0.16	-1.3
3,441,492	+		HGI48_RS15305	0.17	-1.1
3,441,492	+		HGI48_RS15305	0.17	-0.3
3,441,492	+		HGI48_RS15305	0.17	-1.6
3,441,492	+		HGI48_RS15305	0.17	-0.7
3,441,492	+		HGI48_RS15305	0.17	-0.6
3,441,492	+		HGI48_RS15305	0.17	+0.3