Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14815

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,334,728	-		HGI48_RS14805	0.50	+0.4
3,334,782	+		HGI48_RS14805	0.67	-0.3
3,334,784	+		HGI48_RS14805	0.68	-0.0
3,334,784	+		HGI48_RS14805	0.68	-1.1
3,334,785	-		HGI48_RS14805	0.68	+0.3
3,334,785	-		HGI48_RS14805	0.68	+0.7
3,334,785	-				+0.1
3,334,785	-		HGI48_RS14805	0.68	+0.5
3,334,798	+		HGI48_RS14805	0.72	-1.3
3,334,879	-				+0.7
3,334,892	-				-0.0
3,334,892	-				+0.1
3,334,910	+				-0.3
3,334,913	+				-0.6
3,334,914	-				+0.6
3,334,914	-				-0.3
3,334,949	+				+0.2
3,334,949	+				-0.9
3,334,949	+				+0.7
3,334,950	-				-0.9
3,334,950	-				-1.2
3,334,950	-				-0.9
3,334,950	-				-1.6
3,334,954	+				+0.3
3,334,954	+				-1.6
3,334,954	+				-0.3
3,334,954	+				+2.1
3,334,954	+				+1.3
3,334,954	+				+1.9
3,334,955	-				-1.1
3,334,955	-				-0.0
3,334,955	-				+0.9
3,334,955	-				+2.7
3,334,955	-				-0.8
3,334,960	-				-0.9
3,334,960	-				+0.7
3,334,960	-				-0.3
3,334,961	+				+1.3
3,334,961	+				-0.3
3,334,961	+				+0.9
3,334,961	+				-0.5
3,334,961	+				+1.4
3,334,961	+				+1.1
3,334,962	-				+2.0
3,334,962	-				-2.1
3,334,962	-				+1.3
3,334,962	-				-0.6
3,334,962	-				-2.1
3,334,994	+				+0.5
3,334,994	+				+0.3
3,334,994	+				+0.2
3,334,994	+				-0.7
3,335,019	-				-0.7
3,335,041	-				-0.9
3,335,041	-				-1.3
3,335,048	-				+0.1
3,335,048	-				-1.0
3,335,068	+				-0.4
3,335,068	+				-1.1
3,335,068	+				+0.1
3,335,068	+				-0.3
3,335,069	-				+0.1
3,335,069	-				+1.0
3,335,069	-				+0.8
3,335,069	-				-0.6
3,335,069	-				-0.3
3,335,069	-				+1.3
3,335,069	-				-0.5
3,335,069	-				-0.5
3,335,069	-				+0.3
3,335,069	-				-1.6
3,335,074	-				-1.9
3,335,082	-				-0.1
3,335,085	+				+1.7
3,335,086	-				-2.1
3,335,125	+				-0.5
3,335,125	+				+1.2
3,335,157	+				+1.2
3,335,158	-				+1.4
3,335,158	-				+1.3
3,335,188	+				-1.9
3,335,199	+				-1.5
3,335,199	+				-0.7
3,335,199	+				+0.2
3,335,222	+				-0.5
3,335,223	-				-0.5
3,335,223	-				+0.3
3,335,223	-				+3.9
3,335,223	-				+0.5
3,335,329	+				-2.4
3,335,329	+				-1.6
3,335,330	-				+0.1
3,335,330	-				-0.3
3,335,330	-				-1.6
3,335,330	-				-0.5
3,335,374	-				-0.3
3,335,374	-				-0.4
3,335,377	-				-1.3
3,335,377	-				-0.9
3,335,443	+				-2.3
3,335,443	+				+1.7
3,335,443	+				-1.3
3,335,444	-				-1.9
3,335,444	-				+1.7
3,335,444	-				-1.0
3,335,444	-				-1.1
3,335,444	-				+2.5
3,335,445	+		HGI48_RS14810	0.10	-0.0
3,335,445	+		HGI48_RS14810	0.10	+0.5
3,335,445	+		HGI48_RS14810	0.10	+1.3
3,335,446	-		HGI48_RS14810	0.11	-0.6
3,335,446	-		HGI48_RS14810	0.11	-0.5
3,335,446	-		HGI48_RS14810	0.11	-0.3
3,335,496	+				-0.3
3,335,497	-		HGI48_RS14810	0.26	+2.2
3,335,497	-		HGI48_RS14810	0.26	+1.7
3,335,532	-				+0.7
3,335,532	-		HGI48_RS14810	0.37	-1.5
3,335,542	+		HGI48_RS14810	0.40	+0.3
3,335,542	+		HGI48_RS14810	0.40	-0.6
3,335,542	+		HGI48_RS14810	0.40	+0.7
3,335,542	+		HGI48_RS14810	0.40	+0.2
3,335,542	+		HGI48_RS14810	0.40	-0.0
3,335,542	+		HGI48_RS14810	0.40	+1.8
3,335,543	-		HGI48_RS14810	0.41	-0.3
3,335,543	-				-0.9
3,335,811	-		HGI48_RS14815	0.30	-0.6
3,335,897	+		HGI48_RS14815	0.59	-1.1
3,335,897	+		HGI48_RS14815	0.59	-0.0
3,335,899	+		HGI48_RS14815	0.59	+1.7
3,335,900	-		HGI48_RS14815	0.60	-0.0
3,335,918	+		HGI48_RS14815	0.66	-0.3
3,335,943	+		HGI48_RS14815	0.74	+0.7
3,335,943	+		HGI48_RS14815	0.74	-0.9
3,335,943	+		HGI48_RS14815	0.74	-0.7
3,335,944	-		HGI48_RS14815	0.74	+0.7
3,335,944	-		HGI48_RS14815	0.74	+0.6
3,335,944	-		HGI48_RS14815	0.74	-0.9
3,335,944	-		HGI48_RS14815	0.74	+0.3
3,335,982	-		HGI48_RS14815	0.87	-2.1
3,335,982	-		HGI48_RS14815	0.87	+0.7
3,336,009	+				-0.9
3,336,018	+				-1.9
3,336,019	-				-1.5
3,336,019	-				-1.3
3,336,164	+				-0.5
3,336,164	+				-1.3
3,336,164	+				-1.4
3,336,165	-				-1.6
3,336,193	+				-0.4
3,336,194	-				-1.3
3,336,194	-				-0.8
3,336,238	+				-1.3
3,336,238	+				-0.3
3,336,368	-				+0.9
3,336,373	+				+0.1
3,336,377	+				+0.2
3,336,377	+				+1.0
3,336,377	+				-0.4
3,336,377	+				+0.4
3,336,378	-				+1.4
3,336,378	-				-1.1
3,336,378	-				+0.7
3,336,387	+				-0.1
3,336,397	-				-0.0
3,336,412	+				-2.1
3,336,413	-				+0.2
3,336,508	+		HGI48_RS14820	0.11	-1.3
3,336,508	+		HGI48_RS14820	0.11	+0.8
3,336,508	+				+3.7
3,336,509	-		HGI48_RS14820	0.11	-0.6
3,336,509	-		HGI48_RS14820	0.11	-1.3
3,336,509	-				-0.3
3,336,509	-		HGI48_RS14820	0.11	+1.5
3,336,509	-		HGI48_RS14820	0.11	+0.2
3,336,562	-		HGI48_RS14820	0.16	-1.6
3,336,573	+		HGI48_RS14820	0.17	+0.1
3,336,574	-		HGI48_RS14820	0.17	-2.9
3,336,602	+		HGI48_RS14820	0.20	-0.1
3,336,602	+		HGI48_RS14820	0.20	-1.3
3,336,606	+		HGI48_RS14820	0.20	-0.0
3,336,639	+		HGI48_RS14820	0.24	+0.9
3,336,639	+				+0.7
3,336,639	+		HGI48_RS14820	0.24	+0.7
3,336,639	+		HGI48_RS14820	0.24	-0.2
3,336,639	+		HGI48_RS14820	0.24	+0.4
3,336,639	+		HGI48_RS14820	0.24	-0.3
3,336,639	+		HGI48_RS14820	0.24	+0.6
3,336,639	+		HGI48_RS14820	0.24	-1.3
3,336,639	+		HGI48_RS14820	0.24	+1.5
3,336,640	-		HGI48_RS14820	0.24	+1.0
3,336,640	-		HGI48_RS14820	0.24	-0.9
3,336,640	-		HGI48_RS14820	0.24	-0.5
3,336,643	+		HGI48_RS14820	0.24	-0.3
3,336,643	+		HGI48_RS14820	0.24	-0.9
3,336,644	-		HGI48_RS14820	0.24	-2.1
3,336,678	+		HGI48_RS14820	0.27	+2.3
3,336,678	+		HGI48_RS14820	0.27	+1.2
3,336,678	+				+1.3
3,336,744	+		HGI48_RS14820	0.34	+0.3
3,336,744	+				-0.9
3,336,744	+		HGI48_RS14820	0.34	-2.1
3,336,744	+		HGI48_RS14820	0.34	+1.1
3,336,744	+		HGI48_RS14820	0.34	-1.3
3,336,745	-		HGI48_RS14820	0.34	-0.3
3,336,745	-		HGI48_RS14820	0.34	+0.4
3,336,745	-		HGI48_RS14820	0.34	-0.2
3,336,745	-		HGI48_RS14820	0.34	-0.9
3,336,789	+		HGI48_RS14820	0.38	+0.9
3,336,790	-		HGI48_RS14820	0.38	-0.5
3,336,790	-		HGI48_RS14820	0.38	-2.1
3,336,836	+		HGI48_RS14820	0.43	-0.5
3,336,859	+		HGI48_RS14820	0.45	+0.7
3,336,891	+		HGI48_RS14820	0.48	+0.7
3,336,935	+				+0.7
3,337,001	+		HGI48_RS14820	0.59	-1.6