Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11370

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,474,924	-		HGI48_RS11360	0.84	-0.6
2,474,968	+				+0.6
2,474,968	+				+1.7
2,474,968	+				-2.7
2,474,969	-				-0.6
2,475,003	+				+0.4
2,475,004	-				+2.0
2,475,064	+				+0.2
2,475,065	-				-1.0
2,475,072	+				-0.9
2,475,091	-				+0.4
2,475,091	-				-0.9
2,475,091	-				-0.1
2,475,091	-				-0.0
2,475,184	+				+0.2
2,475,191	+				-1.3
2,475,191	+				-0.4
2,475,191	+				-0.3
2,475,191	+				+0.9
2,475,191	+				-0.1
2,475,191	+				+0.4
2,475,192	-				+0.6
2,475,193	+				-0.6
2,475,193	+				-0.6
2,475,204	+				-0.3
2,475,251	-				+0.1
2,475,253	+				-1.1
2,475,253	+				-1.9
2,475,362	+		HGI48_RS11365	0.29	+0.1
2,475,362	+		HGI48_RS11365	0.29	-3.8
2,475,362	+		HGI48_RS11365	0.29	-1.0
2,475,362	+		HGI48_RS11365	0.29	-0.6
2,475,363	-				+0.4
2,475,363	-		HGI48_RS11365	0.29	+0.4
2,475,363	-		HGI48_RS11365	0.29	-0.3
2,475,363	-				+0.4
2,475,363	-		HGI48_RS11365	0.29	-2.0
2,475,363	-		HGI48_RS11365	0.29	-0.1
2,475,363	-		HGI48_RS11365	0.29	-1.0
2,475,363	-		HGI48_RS11365	0.29	-1.6
2,475,431	+		HGI48_RS11365	0.50	-0.6
2,475,431	+		HGI48_RS11365	0.50	+0.5
2,475,432	-		HGI48_RS11365	0.50	-0.3
2,475,432	-		HGI48_RS11365	0.50	-0.2
2,475,432	-		HGI48_RS11365	0.50	-1.1
2,475,432	-				-1.1
2,475,436	+		HGI48_RS11365	0.51	+0.3
2,475,508	+		HGI48_RS11365	0.73	-0.1
2,475,508	+				+1.2
2,475,509	-		HGI48_RS11365	0.73	-0.4
2,475,535	-		HGI48_RS11365	0.81	-1.7
2,475,582	+				+1.4
2,475,582	+				-1.1
2,475,587	+				-0.3
2,475,588	-				-0.9
2,475,609	-				-0.9
2,475,616	+				-1.1
2,475,616	+				-0.1
2,475,617	-				+0.3
2,475,657	+				+0.7
2,475,661	+				-1.1
2,475,662	-				-0.3
2,475,662	-				-1.6
2,475,668	-				-0.9
2,475,672	+				+0.8
2,475,672	+				-0.4
2,475,672	+				-1.6
2,475,672	+				+0.4
2,475,673	-				-0.3
2,475,673	-				-1.2
2,475,676	-				+0.4
2,475,703	+				+1.4
2,475,780	+				+1.0
2,475,793	+				+0.2
2,475,876	-				-0.9
2,475,876	-				-1.9
2,476,035	+		HGI48_RS11370	0.14	+0.8
2,476,035	+		HGI48_RS11370	0.14	-0.9
2,476,035	+		HGI48_RS11370	0.14	-1.3
2,476,036	-		HGI48_RS11370	0.14	-1.3
2,476,036	-		HGI48_RS11370	0.14	-3.1
2,476,120	+		HGI48_RS11370	0.24	-1.6
2,476,120	+				-0.1
2,476,121	-		HGI48_RS11370	0.24	-1.7
2,476,233	+		HGI48_RS11370	0.37	-1.6
2,476,233	+		HGI48_RS11370	0.37	-0.1
2,476,234	-		HGI48_RS11370	0.37	-1.6
2,476,234	-		HGI48_RS11370	0.37	-1.7
2,476,265	+		HGI48_RS11370	0.41	-2.1
2,476,266	-		HGI48_RS11370	0.41	-2.9
2,476,299	+		HGI48_RS11370	0.45	-0.4
2,476,299	+		HGI48_RS11370	0.45	+0.7
2,476,299	+		HGI48_RS11370	0.45	-2.4
2,476,302	+		HGI48_RS11370	0.46	-0.1
2,476,302	+		HGI48_RS11370	0.46	-1.1
2,476,303	-		HGI48_RS11370	0.46	-1.3
2,476,303	-		HGI48_RS11370	0.46	-1.0
2,476,303	-				+0.4
2,476,416	+		HGI48_RS11370	0.59	+0.4
2,476,416	+		HGI48_RS11370	0.59	-0.6
2,476,416	+		HGI48_RS11370	0.59	-1.1
2,476,416	+		HGI48_RS11370	0.59	-1.9
2,476,416	+		HGI48_RS11370	0.59	-0.9
2,476,417	-		HGI48_RS11370	0.59	+0.3
2,476,417	-		HGI48_RS11370	0.59	-0.9
2,476,417	-		HGI48_RS11370	0.59	-3.3
2,476,419	-		HGI48_RS11370	0.59	-2.4
2,476,419	-				-1.1
2,476,432	+		HGI48_RS11370	0.61	+0.1
2,476,432	+		HGI48_RS11370	0.61	+1.4
2,476,433	-		HGI48_RS11370	0.61	-0.4
2,476,433	-		HGI48_RS11370	0.61	-1.6
2,476,433	-				+2.4
2,476,433	-		HGI48_RS11370	0.61	-1.6
2,476,433	-		HGI48_RS11370	0.61	-0.3
2,476,435	+		HGI48_RS11370	0.61	-0.6
2,476,435	+		HGI48_RS11370	0.61	+0.5
2,476,435	+		HGI48_RS11370	0.61	-2.6
2,476,435	+		HGI48_RS11370	0.61	+1.2
2,476,435	+		HGI48_RS11370	0.61	+0.2
2,476,435	+		HGI48_RS11370	0.61	-0.2
2,476,435	+		HGI48_RS11370	0.61	-0.8
2,476,436	-		HGI48_RS11370	0.62	-0.6
2,476,436	-		HGI48_RS11370	0.62	+0.3
2,476,440	-		HGI48_RS11370	0.62	+0.2
2,476,451	+		HGI48_RS11370	0.63	-1.1
2,476,452	-		HGI48_RS11370	0.63	-0.9
2,476,455	-		HGI48_RS11370	0.64	-2.6
2,476,493	+		HGI48_RS11370	0.68	+0.6
2,476,493	+		HGI48_RS11370	0.68	-1.0
2,476,493	+		HGI48_RS11370	0.68	-0.0
2,476,494	-		HGI48_RS11370	0.68	-1.2
2,476,494	-		HGI48_RS11370	0.68	-2.5
2,476,533	+		HGI48_RS11370	0.73	-0.7
2,476,534	-		HGI48_RS11370	0.73	-1.9
2,476,613	-				-0.1
2,476,664	-				-1.1
2,476,664	-				-0.1
2,476,686	-				-1.4
2,476,686	-				+0.4
2,476,686	-				+6.8
2,476,750	+				-0.4
2,476,750	+				-2.1
2,476,750	+				-0.3
2,476,751	-				-2.0
2,476,751	-				-0.4
2,476,751	-				-1.9
2,476,770	+				-0.1
2,476,872	-				+0.3
2,476,892	+				-0.9
2,476,892	+				+0.0
2,476,892	+				-0.0
2,476,932	-				-2.4
2,476,937	+				-3.5
2,476,938	-				-2.4
2,476,945	+				-1.0
2,476,946	-				-1.6
2,477,012	+				-1.4
2,477,223	-		HGI48_RS11375	0.37	-1.9
2,477,357	+		HGI48_RS11375	0.55	-3.7
2,477,363	+		HGI48_RS11375	0.56	-1.6
2,477,409	+		HGI48_RS11375	0.62	-0.8
2,477,409	+		HGI48_RS11375	0.62	-1.6
2,477,410	-		HGI48_RS11375	0.62	-0.6
2,477,506	-				-0.1
2,477,650	-				-1.1
2,477,651	+				-3.0
2,477,651	+				-1.5
2,477,651	+				-1.1
2,477,651	+				-0.8
2,477,651	+				-1.1
2,477,652	-				-2.2
2,477,652	-				-1.1
2,477,652	-				-2.6
2,477,652	-				-2.6
2,477,653	+				-1.3
2,477,654	-				-3.0
2,477,654	-				-2.9
2,477,663	+				-0.6
2,477,663	+				-0.6
2,477,664	-				+1.0
2,477,664	-				-2.4
2,477,664	-				+0.8
2,477,664	-				-3.0