Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09100

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,953,221	-				+0.1
1,953,231	+		HGI48_RS09085	0.11	-0.0
1,953,246	-		HGI48_RS09085	0.16	+1.5
1,953,273	-		HGI48_RS09085	0.25	+0.9
1,953,273	-		HGI48_RS09085	0.25	-2.2
1,953,275	+		HGI48_RS09085	0.25	-1.6
1,953,301	+		HGI48_RS09085	0.34	-0.5
1,953,301	+				+0.9
1,953,301	+		HGI48_RS09085	0.34	+0.6
1,953,302	-		HGI48_RS09085	0.34	+1.3
1,953,302	-		HGI48_RS09085	0.34	-0.2
1,953,302	-		HGI48_RS09085	0.34	-2.6
1,953,302	-		HGI48_RS09085	0.34	-0.5
1,953,378	+				+1.3
1,953,378	+		HGI48_RS09085	0.59	+0.9
1,953,379	-		HGI48_RS09085	0.60	+0.3
1,953,379	-		HGI48_RS09085	0.60	-2.1
1,953,405	+		HGI48_RS09085	0.68	+0.5
1,953,406	-		HGI48_RS09085	0.69	-1.9
1,953,445	+		HGI48_RS09085	0.82	-0.1
1,953,446	-		HGI48_RS09085	0.82	-0.3
1,953,446	-		HGI48_RS09085	0.82	-1.8
1,953,452	-		HGI48_RS09085	0.84	+1.0
1,953,452	-		HGI48_RS09085	0.84	+0.7
1,953,479	+				+0.4
1,953,479	+				-0.0
1,953,484	-				-0.6
1,953,492	-				-0.6
1,953,515	-		HGI48_RS09090	0.10	-0.8
1,953,522	+		HGI48_RS09090	0.13	-1.8
1,953,598	+		HGI48_RS09090	0.44	-0.2
1,953,598	+		HGI48_RS09090	0.44	-0.5
1,953,623	+				-1.1
1,953,623	+		HGI48_RS09090	0.54	-0.8
1,953,712	+				+0.7
1,953,712	+				-1.8
1,953,773	+				+1.1
1,953,800	+				+0.3
1,953,800	+				+0.7
1,953,800	+				-1.1
1,953,801	-				-0.2
1,953,801	-				-1.0
1,953,801	-				-0.6
1,953,801	-				-0.1
1,953,804	-				-0.5
1,953,813	+				-0.0
1,953,814	-				+0.7
1,953,814	-				+0.4
1,953,835	-				+2.1
1,953,856	+				+1.4
1,953,857	-				-0.3
1,953,881	+				+0.5
1,953,895	+				-1.5
1,953,896	-				-0.5
1,953,908	-				-0.8
1,953,908	-				-2.3
1,953,932	-				+0.1
1,953,943	+				+0.2
1,953,944	-				-2.9
1,953,944	-				+1.0
1,953,968	+				-0.8
1,953,968	+				+0.8
1,953,968	+				-0.1
1,953,969	-				-1.8
1,953,969	-				-0.1
1,953,969	-				-1.5
1,953,969	-				-1.6
1,954,222	+				+0.3
1,954,223	-				-0.5
1,954,241	+				+1.0
1,954,242	-				+0.5
1,954,250	+				+0.5
1,954,250	+				-0.3
1,954,250	+				-1.5
1,954,251	-				+0.1
1,954,296	+				+2.7
1,954,297	-				-1.6
1,954,300	-				-0.1
1,954,315	+				+0.8
1,954,315	+				+0.5
1,954,368	-		HGI48_RS09100	0.15	-0.8
1,954,387	+		HGI48_RS09100	0.17	+0.5
1,954,418	+		HGI48_RS09100	0.20	+0.9
1,954,418	+		HGI48_RS09100	0.20	+0.0
1,954,418	+		HGI48_RS09100	0.20	-0.8
1,954,418	+				+1.3
1,954,419	-		HGI48_RS09100	0.20	+1.2
1,954,419	-		HGI48_RS09100	0.20	+0.7
1,954,419	-		HGI48_RS09100	0.20	-2.1
1,954,419	-		HGI48_RS09100	0.20	-1.1
1,954,419	-		HGI48_RS09100	0.20	-0.5
1,954,419	-		HGI48_RS09100	0.20	-0.7
1,954,419	-		HGI48_RS09100	0.20	-0.7
1,954,419	-		HGI48_RS09100	0.20	-2.8
1,954,443	+		HGI48_RS09100	0.22	-1.4
1,954,445	+		HGI48_RS09100	0.22	-0.5
1,954,482	-		HGI48_RS09100	0.26	+0.6
1,954,490	-				-0.1
1,954,528	+		HGI48_RS09100	0.31	+0.1
1,954,571	-		HGI48_RS09100	0.35	-0.5
1,954,577	+		HGI48_RS09100	0.35	+1.8
1,954,577	+		HGI48_RS09100	0.35	-0.1
1,954,583	+		HGI48_RS09100	0.36	-1.7
1,954,584	-		HGI48_RS09100	0.36	-2.1
1,954,584	-		HGI48_RS09100	0.36	+4.9
1,954,627	+				-1.1
1,954,628	-		HGI48_RS09100	0.40	-2.1
1,954,628	-				-0.1
1,954,631	+		HGI48_RS09100	0.41	+0.2
1,954,705	+		HGI48_RS09100	0.48	+0.7
1,954,706	-				+1.8
1,954,728	+		HGI48_RS09100	0.50	+0.3
1,954,749	-				+1.3
1,954,775	+		HGI48_RS09100	0.55	+1.8
1,954,776	-		HGI48_RS09100	0.55	+0.2
1,954,776	-		HGI48_RS09100	0.55	+0.8
1,954,835	-		HGI48_RS09100	0.61	-1.4
1,954,842	+		HGI48_RS09100	0.61	-2.3
1,954,842	+		HGI48_RS09100	0.61	-0.5
1,954,842	+		HGI48_RS09100	0.61	-1.0
1,954,843	-				-0.1
1,954,843	-		HGI48_RS09100	0.62	-0.0
1,954,843	-		HGI48_RS09100	0.62	-0.3
1,954,843	-		HGI48_RS09100	0.62	+0.8
1,954,948	+		HGI48_RS09100	0.72	-0.6
1,954,948	+		HGI48_RS09100	0.72	+0.3
1,954,948	+				-0.5
1,954,949	-		HGI48_RS09100	0.72	-0.5
1,954,949	-		HGI48_RS09100	0.72	+0.8
1,954,949	-		HGI48_RS09100	0.72	-2.7
1,954,949	-		HGI48_RS09100	0.72	-1.8
1,954,955	+		HGI48_RS09100	0.73	+0.5
1,954,956	-		HGI48_RS09100	0.73	+0.5
1,954,956	-		HGI48_RS09100	0.73	+1.1
1,954,956	-		HGI48_RS09100	0.73	+1.3
1,955,077	+		HGI48_RS09100	0.85	-1.5
1,955,077	+		HGI48_RS09100	0.85	-0.7
1,955,077	+		HGI48_RS09100	0.85	-1.0
1,955,078	-		HGI48_RS09100	0.85	-0.2
1,955,084	+				+0.5
1,955,084	+		HGI48_RS09100	0.85	+0.8
1,955,084	+		HGI48_RS09100	0.85	+0.3
1,955,085	-		HGI48_RS09100	0.85	+0.7
1,955,185	+				+0.1
1,955,186	-				+1.3
1,955,186	-				-0.5
1,955,192	-				-0.7
1,955,192	-				+0.7
1,955,218	+				-0.5
1,955,252	+				-1.8
1,955,252	+				-0.8
1,955,253	-				+0.7
1,955,286	+				-1.0
1,955,327	+				-1.8
1,955,327	+				+0.1
1,955,328	-				-0.9
1,955,336	-				-2.1
1,955,343	+				-0.2
1,955,346	+				-1.7
1,955,347	-				-1.3
1,955,347	-				-1.1
1,955,350	+				+0.5
1,955,350	+				-0.2
1,955,351	-				+0.5
1,955,354	-				+0.1
1,955,366	+				+1.4
1,955,367	-				+0.1
1,955,367	-				-0.2
1,955,373	+				+0.9
1,955,374	-				-1.1
1,955,374	-				+1.5
1,955,374	-				+2.1
1,955,375	+				-0.2
1,955,412	-				+1.3
1,955,439	+				+0.5
1,955,439	+				+1.3
1,955,440	-				+1.1
1,955,553	-				-1.8
1,955,554	+				-0.4
1,955,555	-				+0.3
1,955,680	+				-1.9
1,955,681	-				+0.3
1,955,735	+				+0.3
1,955,775	-				-0.5
1,955,775	-				+0.2
1,955,836	-				-0.5
1,955,866	+				-1.7
1,956,044	+				-1.6
1,956,049	+				-0.7
1,956,050	-				-0.8
1,956,050	-				-1.5
1,956,054	+				-1.1
1,956,065	+				-2.9
1,956,114	+				+0.5
1,956,115	-				+1.1
1,956,136	-				+0.8
1,956,136	-				+1.7
1,956,141	+				+0.5
1,956,141	+				+3.0
1,956,142	-				+0.5