Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS08950 and HGI48_RS08955 are separated by 431 nucleotides HGI48_RS08955 and HGI48_RS08960 are separated by 161 nucleotides HGI48_RS08960 and HGI48_RS08965 are separated by 60 nucleotides HGI48_RS08965 and HGI48_RS08970 are separated by 225 nucleotides
HGI48_RS08950: HGI48_RS08950 - heat-shock protein, at 1,929,017 to 1,929,175
_RS08950
HGI48_RS08955: HGI48_RS08955 - hypothetical protein, at 1,929,607 to 1,929,981
_RS08955
HGI48_RS08960: HGI48_RS08960 - hypothetical protein, at 1,930,143 to 1,930,505
_RS08960
HGI48_RS08965: HGI48_RS08965 - hypothetical protein, at 1,930,566 to 1,930,964
_RS08965
HGI48_RS08970: HGI48_RS08970 - ABC transporter ATP-binding protein, at 1,931,190 to 1,931,867
_RS08970
Position (kb) 1930
1931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1929.173 kb on + strand at 1929.236 kb on + strand at 1929.241 kb on - strand at 1929.347 kb on - strand at 1929.440 kb on - strand at 1929.519 kb on - strand at 1929.617 kb on + strand at 1929.706 kb on + strand, within HGI48_RS08955 at 1929.706 kb on + strand, within HGI48_RS08955 at 1929.810 kb on + strand, within HGI48_RS08955 at 1929.967 kb on - strand at 1930.049 kb on + strand at 1930.105 kb on - strand at 1930.107 kb on - strand at 1930.149 kb on + strand at 1930.149 kb on + strand at 1930.199 kb on + strand, within HGI48_RS08960 at 1930.199 kb on + strand, within HGI48_RS08960 at 1930.264 kb on + strand, within HGI48_RS08960 at 1930.268 kb on + strand, within HGI48_RS08960 at 1930.268 kb on + strand, within HGI48_RS08960 at 1930.269 kb on - strand, within HGI48_RS08960 at 1930.269 kb on - strand, within HGI48_RS08960 at 1930.273 kb on - strand, within HGI48_RS08960 at 1930.341 kb on - strand at 1930.366 kb on - strand, within HGI48_RS08960 at 1930.370 kb on + strand, within HGI48_RS08960 at 1930.524 kb on - strand at 1930.577 kb on + strand at 1930.699 kb on - strand, within HGI48_RS08965 at 1930.835 kb on + strand, within HGI48_RS08965 at 1930.862 kb on + strand, within HGI48_RS08965 at 1931.047 kb on - strand at 1931.048 kb on + strand at 1931.141 kb on + strand at 1931.141 kb on + strand at 1931.205 kb on - strand at 1931.205 kb on - strand at 1931.257 kb on + strand at 1931.275 kb on + strand at 1931.275 kb on + strand, within HGI48_RS08970 at 1931.333 kb on + strand, within HGI48_RS08970 at 1931.347 kb on + strand, within HGI48_RS08970 at 1931.348 kb on - strand, within HGI48_RS08970 at 1931.348 kb on - strand, within HGI48_RS08970 at 1931.382 kb on + strand, within HGI48_RS08970 at 1931.382 kb on + strand, within HGI48_RS08970 at 1931.382 kb on + strand, within HGI48_RS08970 at 1931.383 kb on - strand, within HGI48_RS08970 at 1931.383 kb on - strand, within HGI48_RS08970 at 1931.383 kb on - strand at 1931.441 kb on + strand, within HGI48_RS08970
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,929,173 + +0.0 1,929,236 + -2.8 1,929,241 - -0.5 1,929,347 - +0.5 1,929,440 - -0.1 1,929,519 - -0.5 1,929,617 + +0.7 1,929,706 + HGI48_RS08955 0.26 -0.6 1,929,706 + HGI48_RS08955 0.26 -0.5 1,929,810 + HGI48_RS08955 0.54 -0.1 1,929,967 - -2.6 1,930,049 + -2.1 1,930,105 - +0.2 1,930,107 - -1.8 1,930,149 + -0.2 1,930,149 + -1.1 1,930,199 + HGI48_RS08960 0.15 -0.8 1,930,199 + HGI48_RS08960 0.15 -0.7 1,930,264 + HGI48_RS08960 0.33 -1.2 1,930,268 + HGI48_RS08960 0.34 -0.1 1,930,268 + HGI48_RS08960 0.34 -1.8 1,930,269 - HGI48_RS08960 0.35 -0.2 1,930,269 - HGI48_RS08960 0.35 -1.1 1,930,273 - HGI48_RS08960 0.36 -0.1 1,930,341 - -1.1 1,930,366 - HGI48_RS08960 0.61 -2.6 1,930,370 + HGI48_RS08960 0.63 -0.2 1,930,524 - +0.5 1,930,577 + +0.5 1,930,699 - HGI48_RS08965 0.33 -0.3 1,930,835 + HGI48_RS08965 0.67 -0.1 1,930,862 + HGI48_RS08965 0.74 -0.8 1,931,047 - +2.1 1,931,048 + -1.1 1,931,141 + -1.4 1,931,141 + +1.3 1,931,205 - +0.3 1,931,205 - -2.6 1,931,257 + -1.3 1,931,275 + -0.1 1,931,275 + HGI48_RS08970 0.13 -1.1 1,931,333 + HGI48_RS08970 0.21 -0.6 1,931,347 + HGI48_RS08970 0.23 +0.9 1,931,348 - HGI48_RS08970 0.23 +2.2 1,931,348 - HGI48_RS08970 0.23 -0.2 1,931,382 + HGI48_RS08970 0.28 +0.1 1,931,382 + HGI48_RS08970 0.28 +0.6 1,931,382 + HGI48_RS08970 0.28 -1.2 1,931,383 - HGI48_RS08970 0.28 +0.1 1,931,383 - HGI48_RS08970 0.28 +0.9 1,931,383 - +0.9 1,931,441 + HGI48_RS08970 0.37 +0.1
Or see this region's nucleotide sequence