Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05420

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS05415 and HGI48_RS05420 are separated by 435 nucleotidesHGI48_RS05420 and HGI48_RS05425 are separated by 359 nucleotidesHGI48_RS05425 and HGI48_RS05430 are separated by 166 nucleotides HGI48_RS05415: HGI48_RS05415 - hypothetical protein, at 1,135,587 to 1,136,183 _RS05415 HGI48_RS05420: HGI48_RS05420 - N-acetyltransferase, at 1,136,619 to 1,137,149 _RS05420 HGI48_RS05425: HGI48_RS05425 - M20 peptidase family dipeptidase, at 1,137,509 to 1,137,712 _RS05425 HGI48_RS05430: HGI48_RS05430 - HAD family hydrolase, at 1,137,879 to 1,138,535 _RS05430 Position (kb) 1136 1137 1138Strain fitness (log2 ratio) -2 -1 0 1 2at 1135.655 kb on + strand, within HGI48_RS05415at 1135.656 kb on - strandat 1135.656 kb on - strand, within HGI48_RS05415at 1135.797 kb on - strand, within HGI48_RS05415at 1135.797 kb on - strand, within HGI48_RS05415at 1135.797 kb on - strand, within HGI48_RS05415at 1135.800 kb on - strandat 1135.877 kb on + strand, within HGI48_RS05415at 1135.950 kb on + strand, within HGI48_RS05415at 1135.951 kb on - strand, within HGI48_RS05415at 1135.951 kb on - strand, within HGI48_RS05415at 1135.951 kb on - strand, within HGI48_RS05415at 1135.951 kb on - strand, within HGI48_RS05415at 1135.951 kb on - strandat 1135.951 kb on - strand, within HGI48_RS05415at 1135.951 kb on - strand, within HGI48_RS05415at 1135.973 kb on + strand, within HGI48_RS05415at 1135.973 kb on + strand, within HGI48_RS05415at 1135.974 kb on - strand, within HGI48_RS05415at 1135.974 kb on - strand, within HGI48_RS05415at 1135.974 kb on - strand, within HGI48_RS05415at 1135.974 kb on - strand, within HGI48_RS05415at 1135.977 kb on - strand, within HGI48_RS05415at 1135.977 kb on - strand, within HGI48_RS05415at 1135.977 kb on - strand, within HGI48_RS05415at 1136.049 kb on + strand, within HGI48_RS05415at 1136.049 kb on + strand, within HGI48_RS05415at 1136.049 kb on + strand, within HGI48_RS05415at 1136.049 kb on + strand, within HGI48_RS05415at 1136.050 kb on - strand, within HGI48_RS05415at 1136.062 kb on + strand, within HGI48_RS05415at 1136.062 kb on + strand, within HGI48_RS05415at 1136.062 kb on + strandat 1136.062 kb on + strand, within HGI48_RS05415at 1136.062 kb on + strandat 1136.063 kb on - strand, within HGI48_RS05415at 1136.063 kb on - strand, within HGI48_RS05415at 1136.063 kb on - strand, within HGI48_RS05415at 1136.063 kb on - strand, within HGI48_RS05415at 1136.063 kb on - strand, within HGI48_RS05415at 1136.063 kb on - strand, within HGI48_RS05415at 1136.064 kb on + strand, within HGI48_RS05415at 1136.064 kb on + strand, within HGI48_RS05415at 1136.064 kb on + strandat 1136.064 kb on + strand, within HGI48_RS05415at 1136.065 kb on - strand, within HGI48_RS05415at 1136.065 kb on - strand, within HGI48_RS05415at 1136.065 kb on - strand, within HGI48_RS05415at 1136.065 kb on - strand, within HGI48_RS05415at 1136.065 kb on - strand, within HGI48_RS05415at 1136.065 kb on - strand, within HGI48_RS05415at 1136.065 kb on - strand, within HGI48_RS05415at 1136.065 kb on - strandat 1136.067 kb on - strand, within HGI48_RS05415at 1136.073 kb on - strand, within HGI48_RS05415at 1136.101 kb on + strand, within HGI48_RS05415at 1136.185 kb on - strandat 1136.185 kb on - strandat 1136.196 kb on + strandat 1136.226 kb on + strandat 1136.255 kb on + strandat 1136.255 kb on + strandat 1136.256 kb on - strandat 1136.260 kb on - strandat 1136.260 kb on - strandat 1136.285 kb on - strandat 1136.346 kb on - strandat 1136.361 kb on + strandat 1136.390 kb on - strandat 1136.407 kb on - strandat 1136.441 kb on + strandat 1136.450 kb on - strandat 1136.450 kb on - strandat 1136.492 kb on - strandat 1136.492 kb on - strandat 1136.492 kb on - strandat 1136.529 kb on - strandat 1136.533 kb on + strandat 1136.533 kb on + strandat 1136.565 kb on + strandat 1136.612 kb on + strandat 1136.613 kb on - strandat 1136.613 kb on - strandat 1136.632 kb on + strandat 1136.632 kb on + strandat 1136.632 kb on + strandat 1136.632 kb on + strandat 1136.633 kb on - strandat 1136.657 kb on + strandat 1136.657 kb on + strandat 1136.657 kb on + strandat 1136.657 kb on + strandat 1136.657 kb on + strandat 1136.658 kb on - strandat 1136.658 kb on - strandat 1136.658 kb on - strandat 1136.675 kb on + strand, within HGI48_RS05420at 1136.675 kb on + strand, within HGI48_RS05420at 1136.679 kb on + strand, within HGI48_RS05420at 1136.679 kb on + strandat 1136.679 kb on + strandat 1136.680 kb on - strand, within HGI48_RS05420at 1136.680 kb on - strandat 1136.680 kb on - strand, within HGI48_RS05420at 1136.700 kb on - strand, within HGI48_RS05420at 1136.700 kb on - strand, within HGI48_RS05420at 1136.700 kb on - strand, within HGI48_RS05420at 1136.805 kb on - strand, within HGI48_RS05420at 1136.805 kb on - strand, within HGI48_RS05420at 1136.826 kb on + strand, within HGI48_RS05420at 1136.826 kb on + strand, within HGI48_RS05420at 1136.838 kb on + strand, within HGI48_RS05420at 1136.884 kb on - strand, within HGI48_RS05420at 1136.994 kb on - strand, within HGI48_RS05420at 1136.994 kb on - strand, within HGI48_RS05420at 1137.019 kb on + strand, within HGI48_RS05420at 1137.019 kb on + strand, within HGI48_RS05420at 1137.019 kb on + strand, within HGI48_RS05420at 1137.020 kb on - strand, within HGI48_RS05420at 1137.040 kb on + strand, within HGI48_RS05420at 1137.155 kb on + strandat 1137.155 kb on + strandat 1137.156 kb on - strandat 1137.219 kb on + strandat 1137.220 kb on - strandat 1137.275 kb on + strandat 1137.275 kb on + strandat 1137.297 kb on + strandat 1137.298 kb on - strandat 1137.298 kb on - strandat 1137.300 kb on + strandat 1137.301 kb on - strandat 1137.343 kb on + strandat 1137.344 kb on - strandat 1137.344 kb on - strandat 1137.344 kb on - strandat 1137.420 kb on + strandat 1137.420 kb on + strandat 1137.420 kb on + strandat 1137.476 kb on + strandat 1137.476 kb on + strandat 1137.477 kb on - strandat 1137.792 kb on - strandat 1138.060 kb on - strand, within HGI48_RS05430at 1138.084 kb on + strand, within HGI48_RS05430

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
1,135,655 + HGI48_RS05415 0.11 +0.0
1,135,656 - -0.8
1,135,656 - HGI48_RS05415 0.12 -0.8
1,135,797 - HGI48_RS05415 0.35 -0.3
1,135,797 - HGI48_RS05415 0.35 -0.4
1,135,797 - HGI48_RS05415 0.35 -1.8
1,135,800 - +0.2
1,135,877 + HGI48_RS05415 0.49 -1.0
1,135,950 + HGI48_RS05415 0.61 -0.4
1,135,951 - HGI48_RS05415 0.61 +0.3
1,135,951 - HGI48_RS05415 0.61 -1.5
1,135,951 - HGI48_RS05415 0.61 +0.2
1,135,951 - HGI48_RS05415 0.61 +0.9
1,135,951 - +1.2
1,135,951 - HGI48_RS05415 0.61 -1.1
1,135,951 - HGI48_RS05415 0.61 -1.5
1,135,973 + HGI48_RS05415 0.65 +0.8
1,135,973 + HGI48_RS05415 0.65 +0.3
1,135,974 - HGI48_RS05415 0.65 -2.0
1,135,974 - HGI48_RS05415 0.65 +1.6
1,135,974 - HGI48_RS05415 0.65 +0.6
1,135,974 - HGI48_RS05415 0.65 -0.1
1,135,977 - HGI48_RS05415 0.65 -0.8
1,135,977 - HGI48_RS05415 0.65 +0.9
1,135,977 - HGI48_RS05415 0.65 -0.8
1,136,049 + HGI48_RS05415 0.77 +0.3
1,136,049 + HGI48_RS05415 0.77 +0.0
1,136,049 + HGI48_RS05415 0.77 +0.0
1,136,049 + HGI48_RS05415 0.77 -0.3
1,136,050 - HGI48_RS05415 0.78 -1.6
1,136,062 + HGI48_RS05415 0.80 +1.3
1,136,062 + HGI48_RS05415 0.80 -0.2
1,136,062 + -0.2
1,136,062 + HGI48_RS05415 0.80 +0.1
1,136,062 + +0.8
1,136,063 - HGI48_RS05415 0.80 -1.0
1,136,063 - HGI48_RS05415 0.80 -0.8
1,136,063 - HGI48_RS05415 0.80 -0.2
1,136,063 - HGI48_RS05415 0.80 -0.2
1,136,063 - HGI48_RS05415 0.80 -0.1
1,136,063 - HGI48_RS05415 0.80 -0.1
1,136,064 + HGI48_RS05415 0.80 -0.2
1,136,064 + HGI48_RS05415 0.80 +0.4
1,136,064 + -0.8
1,136,064 + HGI48_RS05415 0.80 -0.4
1,136,065 - HGI48_RS05415 0.80 -0.9
1,136,065 - HGI48_RS05415 0.80 +0.4
1,136,065 - HGI48_RS05415 0.80 -0.9
1,136,065 - HGI48_RS05415 0.80 -2.4
1,136,065 - HGI48_RS05415 0.80 +0.2
1,136,065 - HGI48_RS05415 0.80 +0.2
1,136,065 - HGI48_RS05415 0.80 +0.0
1,136,065 - +1.4
1,136,067 - HGI48_RS05415 0.80 +0.2
1,136,073 - HGI48_RS05415 0.81 +0.1
1,136,101 + HGI48_RS05415 0.86 +0.3
1,136,185 - -0.5
1,136,185 - -0.2
1,136,196 + -0.8
1,136,226 + -0.2
1,136,255 + -1.5
1,136,255 + +0.6
1,136,256 - +2.0
1,136,260 - +0.6
1,136,260 - +0.6
1,136,285 - -0.4
1,136,346 - -0.3
1,136,361 + +0.3
1,136,390 - +0.8
1,136,407 - +0.0
1,136,441 + +0.4
1,136,450 - -0.0
1,136,450 - -1.2
1,136,492 - -0.8
1,136,492 - +0.0
1,136,492 - +0.4
1,136,529 - -0.2
1,136,533 + -0.2
1,136,533 + +0.8
1,136,565 + -2.5
1,136,612 + -1.6
1,136,613 - -0.6
1,136,613 - +0.8
1,136,632 + +0.1
1,136,632 + -1.5
1,136,632 + -0.3
1,136,632 + +0.4
1,136,633 - +0.2
1,136,657 + -0.6
1,136,657 + -0.5
1,136,657 + +0.8
1,136,657 + -0.8
1,136,657 + -0.4
1,136,658 - +1.3
1,136,658 - -0.8
1,136,658 - -0.6
1,136,675 + HGI48_RS05420 0.11 -0.8
1,136,675 + HGI48_RS05420 0.11 -1.1
1,136,679 + HGI48_RS05420 0.11 +0.2
1,136,679 + +0.8
1,136,679 + +1.2
1,136,680 - HGI48_RS05420 0.11 +0.1
1,136,680 - +1.4
1,136,680 - HGI48_RS05420 0.11 -0.4
1,136,700 - HGI48_RS05420 0.15 +0.4
1,136,700 - HGI48_RS05420 0.15 -1.8
1,136,700 - HGI48_RS05420 0.15 -1.2
1,136,805 - HGI48_RS05420 0.35 +0.8
1,136,805 - HGI48_RS05420 0.35 +1.3
1,136,826 + HGI48_RS05420 0.39 -0.2
1,136,826 + HGI48_RS05420 0.39 -1.0
1,136,838 + HGI48_RS05420 0.41 -1.8
1,136,884 - HGI48_RS05420 0.50 +1.1
1,136,994 - HGI48_RS05420 0.71 -0.8
1,136,994 - HGI48_RS05420 0.71 +0.5
1,137,019 + HGI48_RS05420 0.75 +0.8
1,137,019 + HGI48_RS05420 0.75 +0.8
1,137,019 + HGI48_RS05420 0.75 -1.2
1,137,020 - HGI48_RS05420 0.76 +1.6
1,137,040 + HGI48_RS05420 0.79 -1.8
1,137,155 + -0.2
1,137,155 + +1.0
1,137,156 - -0.1
1,137,219 + +0.3
1,137,220 - -1.0
1,137,275 + +2.2
1,137,275 + -0.5
1,137,297 + -0.1
1,137,298 - -0.8
1,137,298 - +0.0
1,137,300 + -2.2
1,137,301 - -0.5
1,137,343 + -0.5
1,137,344 - +0.4
1,137,344 - -0.1
1,137,344 - +0.0
1,137,420 + -2.5
1,137,420 + -1.6
1,137,420 + -2.2
1,137,476 + -0.9
1,137,476 + -1.4
1,137,477 - +2.0
1,137,792 - -1.0
1,138,060 - HGI48_RS05430 0.28 -0.1
1,138,084 + HGI48_RS05430 0.31 -0.9

Or see this region's nucleotide sequence