Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05070

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,061,577	+				+0.1
1,061,578	-				+0.1
1,061,578	-				-1.5
1,061,578	-				+0.1
1,061,578	-				+0.8
1,061,578	-				-0.9
1,061,578	-				+0.3
1,061,578	-				-0.4
1,061,601	+				+0.8
1,061,641	+				+1.8
1,061,641	+		HGI48_RS05065	0.11	-0.5
1,061,688	+		HGI48_RS05065	0.17	-2.2
1,061,707	+		HGI48_RS05065	0.20	-0.4
1,061,707	+		HGI48_RS05065	0.20	+0.9
1,061,707	+		HGI48_RS05065	0.20	+0.2
1,061,708	-		HGI48_RS05065	0.20	-1.4
1,061,708	-		HGI48_RS05065	0.20	+0.1
1,061,708	-		HGI48_RS05065	0.20	-0.4
1,061,709	+		HGI48_RS05065	0.20	-1.8
1,061,710	-		HGI48_RS05065	0.20	+1.1
1,061,710	-		HGI48_RS05065	0.20	+0.0
1,061,890	+		HGI48_RS05065	0.44	-0.4
1,061,891	-		HGI48_RS05065	0.44	-2.4
1,061,930	-		HGI48_RS05065	0.49	-1.0
1,062,121	+		HGI48_RS05065	0.74	+0.8
1,062,121	+		HGI48_RS05065	0.74	-0.1
1,062,121	+		HGI48_RS05065	0.74	+1.1
1,062,121	+		HGI48_RS05065	0.74	+1.1
1,062,121	+		HGI48_RS05065	0.74	-0.9
1,062,122	-				+0.8
1,062,122	-		HGI48_RS05065	0.74	-0.6
1,062,122	-		HGI48_RS05065	0.74	-1.8
1,062,122	-		HGI48_RS05065	0.74	+0.4
1,062,207	+		HGI48_RS05065	0.85	-1.0
1,062,208	-		HGI48_RS05065	0.86	-0.2
1,062,208	-		HGI48_RS05065	0.86	-1.5
1,062,208	-		HGI48_RS05065	0.86	-0.5
1,062,259	-				+0.4
1,062,299	+				-0.8
1,062,300	-				-3.2
1,062,300	-				-2.2
1,062,300	-				-1.5
1,062,309	+				+0.4
1,062,309	+				-1.8
1,062,309	+				-0.0
1,062,309	+				+0.2
1,062,309	+				+2.7
1,062,309	+				+0.8
1,062,387	+				+0.8
1,062,400	-				-2.0
1,062,400	-				+1.6
1,062,421	+				+0.2
1,062,421	+				-0.8
1,062,421	+				-0.6
1,062,421	+				+0.5
1,062,421	+				-1.8
1,062,422	-				-0.5
1,062,495	+				-0.4
1,062,496	-				-1.1
1,062,496	-				-1.2
1,062,696	+		HGI48_RS05070	0.24	-1.2
1,062,697	-		HGI48_RS05070	0.24	-0.9
1,062,697	-				+0.2
1,062,697	-		HGI48_RS05070	0.24	-1.8
1,062,697	-		HGI48_RS05070	0.24	-1.2
1,062,792	+		HGI48_RS05070	0.31	-1.1
1,062,793	-		HGI48_RS05070	0.31	-0.8
1,062,793	-		HGI48_RS05070	0.31	+0.8
1,062,852	+		HGI48_RS05070	0.35	-1.5
1,062,852	+		HGI48_RS05070	0.35	-2.0
1,062,852	+		HGI48_RS05070	0.35	-1.0
1,062,853	-		HGI48_RS05070	0.35	-2.6
1,062,884	-		HGI48_RS05070	0.38	-1.0
1,062,922	+		HGI48_RS05070	0.40	-0.8
1,062,922	+		HGI48_RS05070	0.40	-0.8
1,062,923	-		HGI48_RS05070	0.40	-0.5
1,062,937	-		HGI48_RS05070	0.41	+0.6
1,063,049	+		HGI48_RS05070	0.50	-2.2
1,063,049	+		HGI48_RS05070	0.50	-0.9
1,063,050	-		HGI48_RS05070	0.50	-0.7
1,063,103	-		HGI48_RS05070	0.54	-2.8
1,063,189	+				+1.4
1,063,239	+		HGI48_RS05070	0.64	+1.6
1,063,239	+		HGI48_RS05070	0.64	-0.2
1,063,239	+		HGI48_RS05070	0.64	+0.0
1,063,239	+		HGI48_RS05070	0.64	-1.3
1,063,239	+		HGI48_RS05070	0.64	-0.0
1,063,239	+		HGI48_RS05070	0.64	+0.5
1,063,240	-		HGI48_RS05070	0.64	-2.7
1,063,240	-		HGI48_RS05070	0.64	-0.5
1,063,240	-		HGI48_RS05070	0.64	-1.2
1,063,245	+		HGI48_RS05070	0.64	-1.1
1,063,403	+		HGI48_RS05070	0.76	+0.6
1,063,404	-		HGI48_RS05070	0.76	+0.5
1,063,426	+		HGI48_RS05070	0.77	-2.5
1,063,457	+		HGI48_RS05070	0.80	-2.0
1,063,637	+				-0.8
1,063,697	+				-0.6
1,063,723	+				+0.0
1,063,723	+				+0.2
1,063,723	+				+0.2
1,063,724	-				-0.5
1,063,724	-				-0.5
1,063,724	-				-0.8
1,063,724	-				+0.1
1,063,735	+				-0.3
1,063,735	+				+0.5
1,063,735	+				-0.2
1,063,735	+				+0.2
1,063,736	-				+0.3
1,063,736	-				-0.6
1,063,738	+				-0.6
1,063,738	+				-1.0
1,063,738	+				-0.1
1,063,815	+				+3.2
1,063,815	+				-0.5
1,063,815	+				-0.8
1,063,816	-				-2.2
1,063,825	+				+0.5
1,063,825	+				-2.0
1,063,825	+				+0.8
1,063,825	+				+0.8
1,063,886	-				-1.2
1,063,886	-				+0.1
1,063,917	+				-2.4
1,063,917	+				+0.9
1,063,918	-				-0.4
1,063,918	-				+0.8
1,063,938	+				+0.2
1,063,938	+				-2.2
1,063,940	+				-2.5
1,063,940	+				-0.3
1,063,941	-				-0.6
1,063,941	-				+0.9
1,063,941	-				-1.3
1,063,941	-				-0.2
1,063,958	+				+0.7
1,063,959	-				-1.2
1,064,009	+				-1.0
1,064,009	+				+0.1
1,064,010	-				+0.8
1,064,010	-				-1.4
1,064,010	-				-0.1
1,064,041	+				+0.5
1,064,042	-				+0.8
1,064,051	+				+1.8
1,064,051	+		HGI48_RS05075	0.10	-1.2
1,064,052	-		HGI48_RS05075	0.10	+0.0
1,064,095	+		HGI48_RS05075	0.18	-0.2
1,064,095	+		HGI48_RS05075	0.18	+0.6
1,064,095	+		HGI48_RS05075	0.18	-0.9
1,064,096	-		HGI48_RS05075	0.18	+0.6
1,064,096	-		HGI48_RS05075	0.18	-1.5
1,064,323	-				+1.5
1,064,385	+		HGI48_RS05075	0.71	-1.6
1,064,385	+		HGI48_RS05075	0.71	+0.4
1,064,385	+		HGI48_RS05075	0.71	+0.8
1,064,385	+		HGI48_RS05075	0.71	+0.1
1,064,385	+		HGI48_RS05075	0.71	+2.0
1,064,386	-		HGI48_RS05075	0.71	-2.2
1,064,386	-				+1.8
1,064,386	-		HGI48_RS05075	0.71	-1.1
1,064,386	-		HGI48_RS05075	0.71	+0.1
1,064,386	-		HGI48_RS05075	0.71	+0.1
1,064,386	-		HGI48_RS05075	0.71	+1.6
1,064,518	+				-1.2
1,064,519	-				-0.4
1,064,521	-				-0.8
1,064,521	-				-1.2
1,064,542	+				+0.2
1,064,542	+				+0.4
1,064,542	+				-1.4
1,064,564	+				-0.2
1,064,630	+				-1.5
1,064,636	-				+0.5
1,064,665	+				+0.5