Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04440 and HGI48_RS04445 are separated by 47 nucleotides HGI48_RS04445 and HGI48_RS04450 are separated by 424 nucleotides HGI48_RS04450 and HGI48_RS04455 are separated by 188 nucleotides
HGI48_RS04440: HGI48_RS04440 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 929,248 to 930,975
_RS04440
HGI48_RS04445: HGI48_RS04445 - phosphocarrier protein Hpr, at 931,023 to 931,280
_RS04445
HGI48_RS04450: HGI48_RS04450 - cysteine synthase A, at 931,705 to 932,673
_RS04450
HGI48_RS04455: HGI48_RS04455 - sulfate transporter CysZ, at 932,862 to 933,632
_RS04455
Position (kb) 931
932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 930.748 kb on - strand, within HGI48_RS04440 at 930.748 kb on - strand, within HGI48_RS04440 at 930.807 kb on + strand at 930.958 kb on + strand at 930.958 kb on + strand at 930.958 kb on + strand at 930.959 kb on - strand at 930.959 kb on - strand at 930.986 kb on + strand at 930.986 kb on + strand at 930.987 kb on - strand at 930.987 kb on - strand at 930.987 kb on - strand at 930.987 kb on - strand at 931.263 kb on + strand at 931.263 kb on + strand at 931.324 kb on + strand at 931.336 kb on + strand at 931.336 kb on + strand at 931.336 kb on + strand at 931.336 kb on + strand at 931.337 kb on - strand at 931.337 kb on - strand at 931.337 kb on - strand at 931.337 kb on - strand at 931.340 kb on + strand at 931.340 kb on + strand at 931.340 kb on + strand at 931.505 kb on - strand at 931.510 kb on + strand at 931.511 kb on - strand at 931.511 kb on - strand at 931.511 kb on - strand at 931.511 kb on - strand at 931.511 kb on - strand at 931.568 kb on - strand at 931.571 kb on - strand at 931.571 kb on - strand at 931.596 kb on + strand at 931.597 kb on - strand at 931.597 kb on - strand at 931.652 kb on + strand at 931.658 kb on - strand at 931.681 kb on - strand at 931.687 kb on + strand at 931.688 kb on - strand at 931.688 kb on - strand at 931.688 kb on - strand at 931.706 kb on + strand at 931.707 kb on - strand at 931.707 kb on - strand at 931.752 kb on + strand at 931.761 kb on - strand at 932.017 kb on + strand, within HGI48_RS04450 at 932.017 kb on + strand, within HGI48_RS04450 at 932.017 kb on + strand, within HGI48_RS04450 at 932.382 kb on + strand at 932.382 kb on + strand, within HGI48_RS04450 at 932.382 kb on + strand, within HGI48_RS04450 at 932.383 kb on - strand, within HGI48_RS04450 at 932.383 kb on - strand, within HGI48_RS04450 at 932.383 kb on - strand, within HGI48_RS04450 at 932.415 kb on + strand, within HGI48_RS04450 at 932.415 kb on + strand, within HGI48_RS04450 at 932.438 kb on + strand, within HGI48_RS04450 at 932.438 kb on + strand, within HGI48_RS04450 at 932.439 kb on - strand at 932.592 kb on + strand at 932.592 kb on + strand at 932.660 kb on + strand at 932.667 kb on + strand at 932.667 kb on + strand at 932.667 kb on + strand at 932.667 kb on + strand at 932.668 kb on - strand at 932.688 kb on - strand at 932.713 kb on + strand at 932.755 kb on - strand at 932.755 kb on - strand at 932.758 kb on + strand at 932.758 kb on + strand at 932.758 kb on + strand at 932.758 kb on + strand at 932.759 kb on - strand at 932.759 kb on - strand at 932.759 kb on - strand at 932.759 kb on - strand at 932.767 kb on - strand at 932.805 kb on + strand at 932.805 kb on + strand at 932.805 kb on + strand at 932.805 kb on + strand at 932.806 kb on - strand at 932.812 kb on + strand at 932.812 kb on + strand at 932.812 kb on + strand at 932.812 kb on + strand at 932.813 kb on - strand at 932.813 kb on - strand at 932.863 kb on + strand at 932.864 kb on - strand at 932.942 kb on + strand, within HGI48_RS04455 at 932.942 kb on + strand at 932.942 kb on + strand, within HGI48_RS04455 at 932.942 kb on + strand, within HGI48_RS04455 at 932.972 kb on + strand, within HGI48_RS04455 at 932.973 kb on - strand, within HGI48_RS04455 at 932.973 kb on - strand, within HGI48_RS04455 at 932.973 kb on - strand, within HGI48_RS04455 at 932.976 kb on + strand, within HGI48_RS04455 at 932.976 kb on + strand, within HGI48_RS04455 at 932.976 kb on + strand at 932.976 kb on + strand, within HGI48_RS04455 at 932.976 kb on + strand, within HGI48_RS04455 at 932.976 kb on + strand, within HGI48_RS04455 at 932.976 kb on + strand, within HGI48_RS04455 at 932.976 kb on + strand, within HGI48_RS04455 at 932.976 kb on + strand, within HGI48_RS04455 at 932.977 kb on - strand, within HGI48_RS04455 at 932.977 kb on - strand, within HGI48_RS04455 at 932.977 kb on - strand, within HGI48_RS04455 at 932.977 kb on - strand, within HGI48_RS04455 at 932.977 kb on - strand, within HGI48_RS04455 at 932.977 kb on - strand at 932.977 kb on - strand, within HGI48_RS04455 at 933.180 kb on + strand, within HGI48_RS04455 at 933.180 kb on + strand, within HGI48_RS04455 at 933.181 kb on - strand, within HGI48_RS04455 at 933.181 kb on - strand, within HGI48_RS04455 at 933.193 kb on + strand, within HGI48_RS04455 at 933.193 kb on + strand at 933.193 kb on + strand, within HGI48_RS04455 at 933.193 kb on + strand, within HGI48_RS04455 at 933.196 kb on + strand, within HGI48_RS04455 at 933.196 kb on + strand, within HGI48_RS04455 at 933.196 kb on + strand, within HGI48_RS04455 at 933.196 kb on + strand, within HGI48_RS04455 at 933.197 kb on - strand, within HGI48_RS04455 at 933.197 kb on - strand, within HGI48_RS04455 at 933.201 kb on + strand, within HGI48_RS04455 at 933.347 kb on + strand, within HGI48_RS04455 at 933.347 kb on + strand, within HGI48_RS04455 at 933.347 kb on + strand, within HGI48_RS04455 at 933.361 kb on + strand, within HGI48_RS04455 at 933.361 kb on + strand, within HGI48_RS04455 at 933.362 kb on - strand, within HGI48_RS04455 at 933.362 kb on - strand, within HGI48_RS04455 at 933.362 kb on - strand, within HGI48_RS04455 at 933.369 kb on + strand, within HGI48_RS04455 at 933.370 kb on - strand, within HGI48_RS04455 at 933.409 kb on + strand, within HGI48_RS04455 at 933.409 kb on + strand, within HGI48_RS04455 at 933.409 kb on + strand, within HGI48_RS04455 at 933.410 kb on - strand, within HGI48_RS04455 at 933.512 kb on + strand, within HGI48_RS04455 at 933.586 kb on + strand at 933.587 kb on - strand at 933.649 kb on + strand at 933.649 kb on + strand at 933.649 kb on + strand at 933.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 930,748 - HGI48_RS04440 0.87 -1.4 930,748 - HGI48_RS04440 0.87 -0.7 930,807 + +0.1 930,958 + -1.5 930,958 + -0.0 930,958 + -1.4 930,959 - -0.4 930,959 - -0.8 930,986 + +0.5 930,986 + -1.2 930,987 - +1.6 930,987 - +1.2 930,987 - +0.8 930,987 - +0.4 931,263 + -0.6 931,263 + -0.2 931,324 + +0.1 931,336 + -1.2 931,336 + -1.6 931,336 + +0.4 931,336 + +0.5 931,337 - -1.2 931,337 - +0.4 931,337 - -0.4 931,337 - -1.4 931,340 + -0.6 931,340 + +0.4 931,340 + -0.5 931,505 - -1.3 931,510 + -0.2 931,511 - +0.4 931,511 - +0.0 931,511 - -0.2 931,511 - -0.5 931,511 - -0.2 931,568 - -1.0 931,571 - -0.6 931,571 - +0.6 931,596 + -0.6 931,597 - -1.0 931,597 - -1.2 931,652 + -1.0 931,658 - -0.6 931,681 - +0.6 931,687 + -0.8 931,688 - -1.8 931,688 - -0.6 931,688 - +2.1 931,706 + +1.1 931,707 - -0.9 931,707 - -1.0 931,752 + +0.1 931,761 - -0.1 932,017 + HGI48_RS04450 0.32 -2.6 932,017 + HGI48_RS04450 0.32 -2.2 932,017 + HGI48_RS04450 0.32 -2.1 932,382 + -0.8 932,382 + HGI48_RS04450 0.70 -2.2 932,382 + HGI48_RS04450 0.70 -1.5 932,383 - HGI48_RS04450 0.70 -0.2 932,383 - HGI48_RS04450 0.70 -0.1 932,383 - HGI48_RS04450 0.70 -0.5 932,415 + HGI48_RS04450 0.73 -0.2 932,415 + HGI48_RS04450 0.73 -0.8 932,438 + HGI48_RS04450 0.76 -2.9 932,438 + HGI48_RS04450 0.76 -0.6 932,439 - +2.1 932,592 + +0.1 932,592 + -0.0 932,660 + +0.6 932,667 + -0.2 932,667 + +0.6 932,667 + -0.5 932,667 + +0.4 932,668 - -0.8 932,688 - -0.6 932,713 + +0.2 932,755 - +0.6 932,755 - +0.1 932,758 + -1.4 932,758 + -0.2 932,758 + +0.1 932,758 + -1.2 932,759 - +1.6 932,759 - -0.2 932,759 - +0.1 932,759 - +2.3 932,767 - -0.9 932,805 + -1.8 932,805 + +0.8 932,805 + +0.3 932,805 + -1.5 932,806 - +0.6 932,812 + +3.8 932,812 + -1.4 932,812 + -1.8 932,812 + -1.0 932,813 - -1.2 932,813 - -1.5 932,863 + -0.8 932,864 - -0.4 932,942 + HGI48_RS04455 0.10 -0.8 932,942 + +1.8 932,942 + HGI48_RS04455 0.10 +1.2 932,942 + HGI48_RS04455 0.10 -0.2 932,972 + HGI48_RS04455 0.14 +0.4 932,973 - HGI48_RS04455 0.14 -1.8 932,973 - HGI48_RS04455 0.14 -0.5 932,973 - HGI48_RS04455 0.14 +0.8 932,976 + HGI48_RS04455 0.15 -0.9 932,976 + HGI48_RS04455 0.15 +1.2 932,976 + +0.2 932,976 + HGI48_RS04455 0.15 -0.1 932,976 + HGI48_RS04455 0.15 -1.4 932,976 + HGI48_RS04455 0.15 -0.1 932,976 + HGI48_RS04455 0.15 +0.4 932,976 + HGI48_RS04455 0.15 -1.2 932,976 + HGI48_RS04455 0.15 -1.2 932,977 - HGI48_RS04455 0.15 -0.1 932,977 - HGI48_RS04455 0.15 +0.8 932,977 - HGI48_RS04455 0.15 +0.7 932,977 - HGI48_RS04455 0.15 -2.4 932,977 - HGI48_RS04455 0.15 -1.4 932,977 - +1.8 932,977 - HGI48_RS04455 0.15 +0.8 933,180 + HGI48_RS04455 0.41 -0.9 933,180 + HGI48_RS04455 0.41 +0.1 933,181 - HGI48_RS04455 0.41 +0.1 933,181 - HGI48_RS04455 0.41 +1.3 933,193 + HGI48_RS04455 0.43 -1.4 933,193 + +2.2 933,193 + HGI48_RS04455 0.43 -0.7 933,193 + HGI48_RS04455 0.43 +0.0 933,196 + HGI48_RS04455 0.43 +0.5 933,196 + HGI48_RS04455 0.43 -1.2 933,196 + HGI48_RS04455 0.43 -1.3 933,196 + HGI48_RS04455 0.43 -0.2 933,197 - HGI48_RS04455 0.43 +0.9 933,197 - HGI48_RS04455 0.43 -1.5 933,201 + HGI48_RS04455 0.44 -0.2 933,347 + HGI48_RS04455 0.63 -0.8 933,347 + HGI48_RS04455 0.63 -0.6 933,347 + HGI48_RS04455 0.63 -1.1 933,361 + HGI48_RS04455 0.65 -1.0 933,361 + HGI48_RS04455 0.65 +0.3 933,362 - HGI48_RS04455 0.65 +0.1 933,362 - HGI48_RS04455 0.65 -0.7 933,362 - HGI48_RS04455 0.65 -0.5 933,369 + HGI48_RS04455 0.66 -1.5 933,370 - HGI48_RS04455 0.66 -0.9 933,409 + HGI48_RS04455 0.71 -0.1 933,409 + HGI48_RS04455 0.71 +0.8 933,409 + HGI48_RS04455 0.71 +0.6 933,410 - HGI48_RS04455 0.71 -1.8 933,512 + HGI48_RS04455 0.84 +0.4 933,586 + +0.3 933,587 - -0.8 933,649 + +2.4 933,649 + -0.4 933,649 + -0.5 933,655 - -0.8
Or see this region's nucleotide sequence