Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03545 and HGI48_RS03550 are separated by 282 nucleotides HGI48_RS03550 and HGI48_RS03555 are separated by 255 nucleotides HGI48_RS03555 and HGI48_RS03560 are separated by 821 nucleotides
HGI48_RS03545: HGI48_RS03545 - sugar ABC transporter permease, at 747,129 to 748,019
_RS03545
HGI48_RS03550: HGI48_RS03550 - TOBE domain-containing protein, at 748,302 to 748,730
_RS03550
HGI48_RS03555: HGI48_RS03555 - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 748,986 to 749,906
_RS03555
HGI48_RS03560: HGI48_RS03560 - NCS2 family permease, at 750,728 to 752,095
_RS03560
Position (kb) 748
749
750 Strain fitness (log2 ratio) -2
-1
0
1
2 at 748.025 kb on + strand at 748.047 kb on - strand at 748.082 kb on + strand at 748.082 kb on + strand at 748.083 kb on - strand at 748.083 kb on - strand at 748.099 kb on - strand at 748.099 kb on - strand at 748.153 kb on + strand at 748.176 kb on - strand at 748.209 kb on - strand at 748.219 kb on - strand at 748.241 kb on + strand at 748.254 kb on + strand at 748.254 kb on + strand at 748.254 kb on + strand at 748.255 kb on - strand at 748.258 kb on + strand at 748.258 kb on + strand at 748.258 kb on + strand at 748.259 kb on - strand at 748.271 kb on + strand at 748.301 kb on + strand at 748.301 kb on + strand at 748.301 kb on + strand at 748.301 kb on + strand at 748.301 kb on + strand at 748.301 kb on + strand at 748.302 kb on - strand at 748.302 kb on - strand at 748.302 kb on - strand at 748.595 kb on + strand at 748.595 kb on + strand, within HGI48_RS03550 at 748.595 kb on + strand, within HGI48_RS03550 at 748.769 kb on + strand at 748.769 kb on + strand at 748.769 kb on + strand at 748.769 kb on + strand at 748.770 kb on - strand at 748.770 kb on - strand at 748.857 kb on + strand at 748.857 kb on + strand at 748.857 kb on + strand at 748.857 kb on + strand at 748.858 kb on - strand at 748.941 kb on + strand at 748.941 kb on + strand at 748.941 kb on + strand at 748.942 kb on - strand at 748.942 kb on - strand at 748.942 kb on - strand at 748.942 kb on - strand at 748.961 kb on + strand at 748.961 kb on + strand at 749.154 kb on - strand, within HGI48_RS03555 at 749.154 kb on - strand, within HGI48_RS03555 at 749.450 kb on + strand, within HGI48_RS03555 at 749.732 kb on + strand, within HGI48_RS03555 at 749.797 kb on - strand, within HGI48_RS03555 at 749.845 kb on - strand at 749.898 kb on + strand at 749.948 kb on + strand at 749.948 kb on + strand at 749.948 kb on + strand at 749.948 kb on + strand at 749.949 kb on - strand at 749.949 kb on - strand at 749.949 kb on - strand at 749.951 kb on + strand at 749.952 kb on - strand at 749.982 kb on - strand at 749.982 kb on - strand at 749.996 kb on - strand at 750.052 kb on + strand at 750.077 kb on + strand at 750.077 kb on + strand at 750.077 kb on + strand at 750.077 kb on + strand at 750.086 kb on + strand at 750.162 kb on + strand at 750.209 kb on - strand at 750.214 kb on + strand at 750.215 kb on - strand at 750.215 kb on - strand at 750.262 kb on - strand at 750.265 kb on + strand at 750.315 kb on - strand at 750.432 kb on + strand at 750.432 kb on + strand at 750.433 kb on - strand at 750.608 kb on + strand at 750.608 kb on + strand at 750.645 kb on - strand at 750.671 kb on - strand at 750.698 kb on + strand at 750.698 kb on + strand at 750.698 kb on + strand at 750.701 kb on + strand at 750.723 kb on - strand at 750.723 kb on - strand at 750.723 kb on - strand at 750.799 kb on + strand at 750.799 kb on + strand at 750.799 kb on + strand at 750.831 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 748,025 + +0.3 748,047 - +0.1 748,082 + -0.5 748,082 + +1.3 748,083 - +1.2 748,083 - -0.1 748,099 - -1.1 748,099 - -0.7 748,153 + +0.4 748,176 - -0.7 748,209 - +0.3 748,219 - -1.3 748,241 + +2.5 748,254 + -0.7 748,254 + +0.4 748,254 + -0.0 748,255 - +1.2 748,258 + +0.3 748,258 + -2.1 748,258 + +0.0 748,259 - +0.4 748,271 + +0.7 748,301 + -0.1 748,301 + -1.9 748,301 + +0.5 748,301 + -2.0 748,301 + -0.6 748,301 + +1.4 748,302 - -1.9 748,302 - -1.1 748,302 - -0.5 748,595 + -0.7 748,595 + HGI48_RS03550 0.68 +0.4 748,595 + HGI48_RS03550 0.68 -0.4 748,769 + -0.4 748,769 + -0.8 748,769 + -1.4 748,769 + -0.7 748,770 - -0.7 748,770 - -0.1 748,857 + +0.7 748,857 + -1.5 748,857 + +0.9 748,857 + -0.7 748,858 - -2.3 748,941 + -0.3 748,941 + -1.5 748,941 + -0.5 748,942 - -0.3 748,942 - -1.9 748,942 - -0.4 748,942 - +1.9 748,961 + -0.6 748,961 + +1.3 749,154 - HGI48_RS03555 0.18 -1.5 749,154 - HGI48_RS03555 0.18 +0.4 749,450 + HGI48_RS03555 0.50 -2.1 749,732 + HGI48_RS03555 0.81 -0.1 749,797 - HGI48_RS03555 0.88 -1.1 749,845 - -0.7 749,898 + +1.5 749,948 + -1.9 749,948 + +1.8 749,948 + +0.9 749,948 + -1.7 749,949 - +1.9 749,949 - -1.3 749,949 - +0.3 749,951 + +1.0 749,952 - +0.6 749,982 - -0.7 749,982 - +2.1 749,996 - -0.0 750,052 + -0.7 750,077 + +0.1 750,077 + +0.1 750,077 + +0.9 750,077 + +1.6 750,086 + -0.2 750,162 + +0.4 750,209 - +0.3 750,214 + -0.5 750,215 - +0.1 750,215 - +0.3 750,262 - -0.0 750,265 + -0.7 750,315 - +0.4 750,432 + -0.5 750,432 + +0.9 750,433 - -2.3 750,608 + -0.9 750,608 + -0.4 750,645 - -0.4 750,671 - -1.2 750,698 + -0.4 750,698 + -0.5 750,698 + -0.0 750,701 + -0.0 750,723 - -1.6 750,723 - +0.6 750,723 - -0.5 750,799 + -0.0 750,799 + -0.5 750,799 + -1.1 750,831 + +0.2
Or see this region's nucleotide sequence