Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03375 and HGI48_RS03380 are separated by 111 nucleotides HGI48_RS03380 and HGI48_RS03385 are separated by 61 nucleotides HGI48_RS03385 and HGI48_RS03390 are separated by 814 nucleotides
HGI48_RS03375: HGI48_RS03375 - LysR family transcriptional regulator, at 707,641 to 708,534
_RS03375
HGI48_RS03380: HGI48_RS03380 - acetolactate decarboxylase, at 708,646 to 709,434
_RS03380
HGI48_RS03385: HGI48_RS03385 - acetolactate synthase AlsS, at 709,496 to 711,175
_RS03385
HGI48_RS03390: HGI48_RS03390 - glycine cleavage system aminomethyltransferase GcvT, at 711,990 to 713,090
_RS03390
Position (kb) 709
710
711
712 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 708.513 kb on - strand at 708.527 kb on - strand at 708.527 kb on - strand at 708.527 kb on - strand at 708.527 kb on - strand at 708.527 kb on - strand at 708.536 kb on + strand at 708.536 kb on + strand at 708.597 kb on - strand at 708.664 kb on - strand at 708.738 kb on + strand at 708.739 kb on - strand, within HGI48_RS03380 at 708.739 kb on - strand, within HGI48_RS03380 at 708.743 kb on - strand, within HGI48_RS03380 at 708.768 kb on + strand, within HGI48_RS03380 at 708.781 kb on + strand, within HGI48_RS03380 at 708.789 kb on + strand, within HGI48_RS03380 at 708.790 kb on - strand, within HGI48_RS03380 at 708.790 kb on - strand, within HGI48_RS03380 at 708.795 kb on + strand at 708.795 kb on + strand, within HGI48_RS03380 at 708.795 kb on + strand, within HGI48_RS03380 at 708.795 kb on + strand, within HGI48_RS03380 at 708.796 kb on - strand, within HGI48_RS03380 at 708.843 kb on + strand, within HGI48_RS03380 at 709.027 kb on - strand, within HGI48_RS03380 at 709.071 kb on - strand, within HGI48_RS03380 at 709.084 kb on - strand at 709.106 kb on + strand, within HGI48_RS03380 at 709.107 kb on - strand, within HGI48_RS03380 at 709.107 kb on - strand, within HGI48_RS03380 at 709.126 kb on + strand, within HGI48_RS03380 at 709.126 kb on + strand, within HGI48_RS03380 at 709.126 kb on + strand, within HGI48_RS03380 at 709.127 kb on - strand, within HGI48_RS03380 at 709.128 kb on + strand, within HGI48_RS03380 at 709.129 kb on - strand, within HGI48_RS03380 at 709.129 kb on - strand, within HGI48_RS03380 at 709.129 kb on - strand, within HGI48_RS03380 at 709.129 kb on - strand, within HGI48_RS03380 at 709.217 kb on - strand, within HGI48_RS03380 at 709.217 kb on - strand, within HGI48_RS03380 at 709.217 kb on - strand, within HGI48_RS03380 at 709.217 kb on - strand, within HGI48_RS03380 at 709.217 kb on - strand, within HGI48_RS03380 at 709.230 kb on + strand, within HGI48_RS03380 at 709.231 kb on - strand, within HGI48_RS03380 at 709.231 kb on - strand, within HGI48_RS03380 at 709.287 kb on + strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand, within HGI48_RS03380 at 709.288 kb on - strand at 709.288 kb on - strand, within HGI48_RS03380 at 709.317 kb on - strand, within HGI48_RS03380 at 709.478 kb on - strand at 709.488 kb on + strand at 709.488 kb on + strand at 709.492 kb on + strand at 709.492 kb on + strand at 709.492 kb on + strand at 709.492 kb on + strand at 709.492 kb on + strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.493 kb on - strand at 709.495 kb on + strand at 709.504 kb on + strand at 709.504 kb on + strand at 709.504 kb on + strand at 709.505 kb on - strand at 709.505 kb on - strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.577 kb on + strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.578 kb on - strand at 709.682 kb on - strand, within HGI48_RS03385 at 709.895 kb on + strand, within HGI48_RS03385 at 709.895 kb on + strand, within HGI48_RS03385 at 709.896 kb on - strand, within HGI48_RS03385 at 709.896 kb on - strand, within HGI48_RS03385 at 709.896 kb on - strand at 709.935 kb on + strand, within HGI48_RS03385 at 709.935 kb on + strand, within HGI48_RS03385 at 709.936 kb on - strand, within HGI48_RS03385 at 709.987 kb on + strand, within HGI48_RS03385 at 710.005 kb on + strand, within HGI48_RS03385 at 710.005 kb on + strand, within HGI48_RS03385 at 710.005 kb on + strand at 710.006 kb on - strand, within HGI48_RS03385 at 710.006 kb on - strand, within HGI48_RS03385 at 710.006 kb on - strand, within HGI48_RS03385 at 710.006 kb on - strand, within HGI48_RS03385 at 710.006 kb on - strand, within HGI48_RS03385 at 710.012 kb on - strand, within HGI48_RS03385 at 710.215 kb on + strand, within HGI48_RS03385 at 710.216 kb on - strand, within HGI48_RS03385 at 710.219 kb on + strand, within HGI48_RS03385 at 710.219 kb on + strand, within HGI48_RS03385 at 710.220 kb on - strand, within HGI48_RS03385 at 710.220 kb on - strand, within HGI48_RS03385 at 710.220 kb on - strand, within HGI48_RS03385 at 710.275 kb on - strand at 710.285 kb on - strand, within HGI48_RS03385 at 710.285 kb on - strand, within HGI48_RS03385 at 710.285 kb on - strand, within HGI48_RS03385 at 710.285 kb on - strand, within HGI48_RS03385 at 710.310 kb on + strand, within HGI48_RS03385 at 710.358 kb on - strand, within HGI48_RS03385 at 710.358 kb on - strand, within HGI48_RS03385 at 710.409 kb on + strand, within HGI48_RS03385 at 710.409 kb on + strand at 710.409 kb on + strand, within HGI48_RS03385 at 710.410 kb on - strand, within HGI48_RS03385 at 710.410 kb on - strand, within HGI48_RS03385 at 710.410 kb on - strand, within HGI48_RS03385 at 710.410 kb on - strand at 710.410 kb on - strand, within HGI48_RS03385 at 710.410 kb on - strand, within HGI48_RS03385 at 710.410 kb on - strand, within HGI48_RS03385 at 710.482 kb on + strand, within HGI48_RS03385 at 710.482 kb on + strand, within HGI48_RS03385 at 710.482 kb on + strand, within HGI48_RS03385 at 710.483 kb on - strand, within HGI48_RS03385 at 710.483 kb on - strand at 710.483 kb on - strand, within HGI48_RS03385 at 710.483 kb on - strand, within HGI48_RS03385 at 710.588 kb on - strand, within HGI48_RS03385 at 710.590 kb on + strand, within HGI48_RS03385 at 710.650 kb on + strand, within HGI48_RS03385 at 710.674 kb on + strand, within HGI48_RS03385 at 710.706 kb on - strand, within HGI48_RS03385 at 710.711 kb on + strand, within HGI48_RS03385 at 710.711 kb on + strand, within HGI48_RS03385 at 710.759 kb on - strand, within HGI48_RS03385 at 710.759 kb on - strand, within HGI48_RS03385 at 710.924 kb on + strand, within HGI48_RS03385 at 710.924 kb on + strand, within HGI48_RS03385 at 710.924 kb on + strand at 710.924 kb on + strand, within HGI48_RS03385 at 710.925 kb on - strand, within HGI48_RS03385 at 710.925 kb on - strand, within HGI48_RS03385 at 710.925 kb on - strand, within HGI48_RS03385 at 710.957 kb on + strand, within HGI48_RS03385 at 710.957 kb on + strand, within HGI48_RS03385 at 710.957 kb on + strand, within HGI48_RS03385 at 710.957 kb on + strand, within HGI48_RS03385 at 710.958 kb on - strand, within HGI48_RS03385 at 710.958 kb on - strand, within HGI48_RS03385 at 710.958 kb on - strand, within HGI48_RS03385 at 710.958 kb on - strand, within HGI48_RS03385 at 711.005 kb on + strand, within HGI48_RS03385 at 711.123 kb on - strand at 711.179 kb on + strand at 711.179 kb on + strand at 711.179 kb on + strand at 711.180 kb on - strand at 711.180 kb on - strand at 711.180 kb on - strand at 711.182 kb on + strand at 711.182 kb on + strand at 711.183 kb on - strand at 711.183 kb on - strand at 711.200 kb on + strand at 711.200 kb on + strand at 711.207 kb on + strand at 711.258 kb on + strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.268 kb on + strand at 711.268 kb on + strand at 711.293 kb on + strand at 711.424 kb on + strand at 711.454 kb on - strand at 711.474 kb on + strand at 711.474 kb on + strand at 711.474 kb on + strand at 711.475 kb on - strand at 711.475 kb on - strand at 711.486 kb on + strand at 711.487 kb on - strand at 711.487 kb on - strand at 711.487 kb on - strand at 711.539 kb on + strand at 711.539 kb on + strand at 711.539 kb on + strand at 711.539 kb on + strand at 711.540 kb on - strand at 711.540 kb on - strand at 711.540 kb on - strand at 711.864 kb on - strand at 711.914 kb on + strand at 711.977 kb on + strand at 711.978 kb on - strand at 711.978 kb on - strand at 711.978 kb on - strand at 712.011 kb on + strand at 712.012 kb on - strand at 712.012 kb on - strand at 712.012 kb on - strand at 712.012 kb on - strand at 712.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 708,513 - -0.5 708,527 - -0.2 708,527 - +0.9 708,527 - +1.2 708,527 - +0.5 708,527 - +0.9 708,536 + -0.9 708,536 + +0.1 708,597 - -0.1 708,664 - -1.0 708,738 + +0.3 708,739 - HGI48_RS03380 0.12 -1.1 708,739 - HGI48_RS03380 0.12 -1.9 708,743 - HGI48_RS03380 0.12 +1.6 708,768 + HGI48_RS03380 0.15 -1.4 708,781 + HGI48_RS03380 0.17 -0.4 708,789 + HGI48_RS03380 0.18 -1.6 708,790 - HGI48_RS03380 0.18 +0.4 708,790 - HGI48_RS03380 0.18 -0.2 708,795 + -0.7 708,795 + HGI48_RS03380 0.19 +1.6 708,795 + HGI48_RS03380 0.19 +1.4 708,795 + HGI48_RS03380 0.19 +0.1 708,796 - HGI48_RS03380 0.19 +1.3 708,843 + HGI48_RS03380 0.25 +0.9 709,027 - HGI48_RS03380 0.48 +0.0 709,071 - HGI48_RS03380 0.54 -1.4 709,084 - -0.1 709,106 + HGI48_RS03380 0.58 -0.1 709,107 - HGI48_RS03380 0.58 -0.1 709,107 - HGI48_RS03380 0.58 -2.3 709,126 + HGI48_RS03380 0.61 -1.1 709,126 + HGI48_RS03380 0.61 -0.7 709,126 + HGI48_RS03380 0.61 -1.4 709,127 - HGI48_RS03380 0.61 -0.7 709,128 + HGI48_RS03380 0.61 -1.4 709,129 - HGI48_RS03380 0.61 +0.2 709,129 - HGI48_RS03380 0.61 +1.0 709,129 - HGI48_RS03380 0.61 +0.3 709,129 - HGI48_RS03380 0.61 +1.1 709,217 - HGI48_RS03380 0.72 +0.9 709,217 - HGI48_RS03380 0.72 +2.2 709,217 - HGI48_RS03380 0.72 -2.3 709,217 - HGI48_RS03380 0.72 -0.1 709,217 - HGI48_RS03380 0.72 -0.5 709,230 + HGI48_RS03380 0.74 -0.5 709,231 - HGI48_RS03380 0.74 -0.9 709,231 - HGI48_RS03380 0.74 -1.4 709,287 + HGI48_RS03380 0.81 -1.7 709,288 - HGI48_RS03380 0.81 -1.6 709,288 - HGI48_RS03380 0.81 +0.5 709,288 - HGI48_RS03380 0.81 +1.2 709,288 - HGI48_RS03380 0.81 -0.9 709,288 - HGI48_RS03380 0.81 -0.1 709,288 - HGI48_RS03380 0.81 -0.1 709,288 - +0.9 709,288 - HGI48_RS03380 0.81 -0.4 709,317 - HGI48_RS03380 0.85 -1.1 709,478 - +0.9 709,488 + -2.0 709,488 + +0.1 709,492 + -0.7 709,492 + +0.3 709,492 + -0.9 709,492 + +0.6 709,492 + -0.2 709,493 - -0.1 709,493 - -1.1 709,493 - -1.0 709,493 - +0.6 709,493 - -1.7 709,493 - +0.0 709,493 - -0.7 709,493 - +0.5 709,495 + +0.2 709,504 + +0.1 709,504 + -0.2 709,504 + -0.9 709,505 - -1.1 709,505 - +0.0 709,577 + -0.4 709,577 + +0.4 709,577 + +3.9 709,577 + -0.1 709,577 + -0.2 709,577 + +1.6 709,577 + -0.9 709,577 + +1.1 709,577 + -2.6 709,577 + +0.1 709,577 + +0.0 709,577 + -2.1 709,577 + -0.5 709,578 - +1.7 709,578 - +1.2 709,578 - -0.9 709,578 - +0.0 709,578 - -0.5 709,578 - -0.1 709,578 - +0.9 709,578 - -1.4 709,578 - +0.9 709,578 - -0.7 709,682 - HGI48_RS03385 0.11 -0.1 709,895 + HGI48_RS03385 0.24 -1.3 709,895 + HGI48_RS03385 0.24 +0.4 709,896 - HGI48_RS03385 0.24 +1.1 709,896 - HGI48_RS03385 0.24 -0.5 709,896 - +0.9 709,935 + HGI48_RS03385 0.26 -1.9 709,935 + HGI48_RS03385 0.26 -1.7 709,936 - HGI48_RS03385 0.26 +0.3 709,987 + HGI48_RS03385 0.29 +2.3 710,005 + HGI48_RS03385 0.30 -1.1 710,005 + HGI48_RS03385 0.30 +5.8 710,005 + +0.9 710,006 - HGI48_RS03385 0.30 +0.6 710,006 - HGI48_RS03385 0.30 -0.3 710,006 - HGI48_RS03385 0.30 +0.1 710,006 - HGI48_RS03385 0.30 +0.4 710,006 - HGI48_RS03385 0.30 +0.3 710,012 - HGI48_RS03385 0.31 +1.2 710,215 + HGI48_RS03385 0.43 -0.4 710,216 - HGI48_RS03385 0.43 -1.6 710,219 + HGI48_RS03385 0.43 -1.6 710,219 + HGI48_RS03385 0.43 +0.7 710,220 - HGI48_RS03385 0.43 -1.1 710,220 - HGI48_RS03385 0.43 +0.7 710,220 - HGI48_RS03385 0.43 -1.9 710,275 - -0.7 710,285 - HGI48_RS03385 0.47 -1.1 710,285 - HGI48_RS03385 0.47 +0.5 710,285 - HGI48_RS03385 0.47 -1.6 710,285 - HGI48_RS03385 0.47 -0.5 710,310 + HGI48_RS03385 0.48 -1.0 710,358 - HGI48_RS03385 0.51 -1.4 710,358 - HGI48_RS03385 0.51 -0.1 710,409 + HGI48_RS03385 0.54 -0.7 710,409 + +0.9 710,409 + HGI48_RS03385 0.54 +0.6 710,410 - HGI48_RS03385 0.54 +1.2 710,410 - HGI48_RS03385 0.54 +0.3 710,410 - HGI48_RS03385 0.54 +0.3 710,410 - +0.3 710,410 - HGI48_RS03385 0.54 +0.2 710,410 - HGI48_RS03385 0.54 +1.6 710,410 - HGI48_RS03385 0.54 -0.4 710,482 + HGI48_RS03385 0.59 -0.4 710,482 + HGI48_RS03385 0.59 -1.3 710,482 + HGI48_RS03385 0.59 +0.9 710,483 - HGI48_RS03385 0.59 -1.4 710,483 - +0.9 710,483 - HGI48_RS03385 0.59 -0.5 710,483 - HGI48_RS03385 0.59 -1.4 710,588 - HGI48_RS03385 0.65 +0.7 710,590 + HGI48_RS03385 0.65 +0.4 710,650 + HGI48_RS03385 0.69 -0.1 710,674 + HGI48_RS03385 0.70 +0.1 710,706 - HGI48_RS03385 0.72 -0.1 710,711 + HGI48_RS03385 0.72 -1.9 710,711 + HGI48_RS03385 0.72 -0.1 710,759 - HGI48_RS03385 0.75 -2.1 710,759 - HGI48_RS03385 0.75 -0.4 710,924 + HGI48_RS03385 0.85 -0.1 710,924 + HGI48_RS03385 0.85 -0.7 710,924 + +1.9 710,924 + HGI48_RS03385 0.85 -0.3 710,925 - HGI48_RS03385 0.85 +1.0 710,925 - HGI48_RS03385 0.85 -0.1 710,925 - HGI48_RS03385 0.85 +0.2 710,957 + HGI48_RS03385 0.87 +1.4 710,957 + HGI48_RS03385 0.87 -0.2 710,957 + HGI48_RS03385 0.87 -0.7 710,957 + HGI48_RS03385 0.87 -1.7 710,958 - HGI48_RS03385 0.87 +0.1 710,958 - HGI48_RS03385 0.87 -0.1 710,958 - HGI48_RS03385 0.87 +0.7 710,958 - HGI48_RS03385 0.87 +0.4 711,005 + HGI48_RS03385 0.90 -0.4 711,123 - -0.7 711,179 + -0.7 711,179 + +1.2 711,179 + -0.4 711,180 - -0.1 711,180 - +0.9 711,180 - +0.1 711,182 + +2.0 711,182 + +0.4 711,183 - -0.8 711,183 - +0.2 711,200 + -0.3 711,200 + +0.5 711,207 + -0.6 711,258 + +0.4 711,259 - +1.3 711,259 - -0.5 711,259 - +1.0 711,268 + +0.1 711,268 + +1.1 711,293 + -0.7 711,424 + -1.6 711,454 - -1.4 711,474 + +0.6 711,474 + -0.2 711,474 + +0.9 711,475 - -0.7 711,475 - -1.4 711,486 + -1.4 711,487 - -1.0 711,487 - -1.7 711,487 - -2.0 711,539 + -0.8 711,539 + -1.1 711,539 + +3.7 711,539 + -0.4 711,540 - -1.1 711,540 - -3.3 711,540 - -1.9 711,864 - -2.1 711,914 + -2.3 711,977 + +0.6 711,978 - -0.7 711,978 - +2.2 711,978 - +2.3 712,011 + -1.1 712,012 - +0.4 712,012 - +1.7 712,012 - +0.1 712,012 - -0.4 712,078 - +0.1
Or see this region's nucleotide sequence