Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03325

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03320 and HGI48_RS03325 are separated by 70 nucleotidesHGI48_RS03325 and HGI48_RS03330 are separated by 73 nucleotidesHGI48_RS03330 and HGI48_RS03335 overlap by 32 nucleotides HGI48_RS03320: HGI48_RS03320 - phosphopentomutase, at 700,438 to 701,661 _RS03320 HGI48_RS03325: HGI48_RS03325 - purine-nucleoside phosphorylase, at 701,732 to 702,457 _RS03325 HGI48_RS03330: HGI48_RS03330 - ribosomal protein S18-alanine N-acetyltransferase, at 702,531 to 702,974 _RS03330 HGI48_RS03335: HGI48_RS03335 - DNA polymerase III subunit psi, at 702,943 to 703,362 _RS03335 Position (kb) 701 702 703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 700.943 kb on - strand, within HGI48_RS03320at 701.053 kb on + strandat 701.228 kb on - strand, within HGI48_RS03320at 701.813 kb on + strand, within HGI48_RS03325at 701.814 kb on - strand, within HGI48_RS03325at 701.867 kb on - strand, within HGI48_RS03325at 701.888 kb on + strand, within HGI48_RS03325at 701.889 kb on - strand, within HGI48_RS03325at 701.889 kb on - strand, within HGI48_RS03325at 701.949 kb on - strand, within HGI48_RS03325at 702.095 kb on - strandat 702.212 kb on + strand, within HGI48_RS03325at 702.212 kb on + strandat 702.290 kb on + strand, within HGI48_RS03325at 702.291 kb on - strand, within HGI48_RS03325at 702.349 kb on + strand, within HGI48_RS03325at 702.466 kb on + strandat 702.467 kb on - strandat 702.469 kb on + strandat 702.470 kb on - strandat 702.470 kb on - strandat 702.470 kb on - strandat 702.470 kb on - strandat 702.506 kb on + strandat 702.506 kb on + strandat 702.506 kb on + strandat 702.507 kb on - strandat 702.507 kb on - strandat 702.587 kb on - strand, within HGI48_RS03330at 702.589 kb on + strand, within HGI48_RS03330at 702.590 kb on - strand, within HGI48_RS03330at 702.590 kb on - strand, within HGI48_RS03330at 702.632 kb on - strand, within HGI48_RS03330at 702.675 kb on + strand, within HGI48_RS03330at 702.675 kb on + strand, within HGI48_RS03330at 702.676 kb on - strand, within HGI48_RS03330at 702.676 kb on - strand, within HGI48_RS03330at 702.676 kb on - strand, within HGI48_RS03330at 702.782 kb on + strandat 702.782 kb on + strand, within HGI48_RS03330at 702.783 kb on - strand, within HGI48_RS03330at 702.783 kb on - strand, within HGI48_RS03330at 702.795 kb on + strand, within HGI48_RS03330at 702.796 kb on - strand, within HGI48_RS03330at 702.798 kb on + strand, within HGI48_RS03330at 702.798 kb on + strandat 702.798 kb on + strand, within HGI48_RS03330at 702.799 kb on - strand, within HGI48_RS03330at 702.799 kb on - strand, within HGI48_RS03330at 702.799 kb on - strand, within HGI48_RS03330at 702.814 kb on + strand, within HGI48_RS03330at 702.814 kb on + strand, within HGI48_RS03330at 702.815 kb on - strand, within HGI48_RS03330at 702.913 kb on - strand, within HGI48_RS03330at 703.368 kb on - strandat 703.401 kb on + strandat 703.420 kb on + strandat 703.421 kb on - strandat 703.421 kb on - strandat 703.421 kb on - strandat 703.436 kb on + strandat 703.436 kb on + strandat 703.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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700,943 - HGI48_RS03320 0.41 +0.9
701,053 + +3.8
701,228 - HGI48_RS03320 0.65 -1.9
701,813 + HGI48_RS03325 0.11 -1.1
701,814 - HGI48_RS03325 0.11 -0.9
701,867 - HGI48_RS03325 0.19 -0.9
701,888 + HGI48_RS03325 0.21 -0.5
701,889 - HGI48_RS03325 0.22 -1.7
701,889 - HGI48_RS03325 0.22 -0.4
701,949 - HGI48_RS03325 0.30 -0.3
702,095 - -0.1
702,212 + HGI48_RS03325 0.66 -0.7
702,212 + -0.7
702,290 + HGI48_RS03325 0.77 -0.9
702,291 - HGI48_RS03325 0.77 -2.4
702,349 + HGI48_RS03325 0.85 +1.2
702,466 + -0.2
702,467 - +0.6
702,469 + -1.1
702,470 - -0.9
702,470 - -2.3
702,470 - +0.5
702,470 - -1.7
702,506 + -0.4
702,506 + +0.9
702,506 + -0.2
702,507 - -1.9
702,507 - -1.4
702,587 - HGI48_RS03330 0.13 +0.4
702,589 + HGI48_RS03330 0.13 +0.1
702,590 - HGI48_RS03330 0.13 -1.1
702,590 - HGI48_RS03330 0.13 -0.8
702,632 - HGI48_RS03330 0.23 -1.7
702,675 + HGI48_RS03330 0.32 -0.2
702,675 + HGI48_RS03330 0.32 +0.6
702,676 - HGI48_RS03330 0.33 -1.2
702,676 - HGI48_RS03330 0.33 +7.0
702,676 - HGI48_RS03330 0.33 -0.1
702,782 + -0.1
702,782 + HGI48_RS03330 0.57 -1.7
702,783 - HGI48_RS03330 0.57 -0.3
702,783 - HGI48_RS03330 0.57 +1.7
702,795 + HGI48_RS03330 0.59 +0.5
702,796 - HGI48_RS03330 0.60 -1.9
702,798 + HGI48_RS03330 0.60 +0.5
702,798 + +0.3
702,798 + HGI48_RS03330 0.60 -0.9
702,799 - HGI48_RS03330 0.60 -1.0
702,799 - HGI48_RS03330 0.60 -0.7
702,799 - HGI48_RS03330 0.60 +0.8
702,814 + HGI48_RS03330 0.64 +1.6
702,814 + HGI48_RS03330 0.64 -0.4
702,815 - HGI48_RS03330 0.64 +1.5
702,913 - HGI48_RS03330 0.86 -0.6
703,368 - -4.5
703,401 + -0.9
703,420 + +0.3
703,421 - +1.9
703,421 - -0.7
703,421 - -0.2
703,436 + -2.3
703,436 + -0.1
703,437 - -1.1

Or see this region's nucleotide sequence