Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03165

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03155 and HGI48_RS03160 are separated by 260 nucleotidesHGI48_RS03160 and HGI48_RS03165 are separated by 19 nucleotidesHGI48_RS03165 and HGI48_RS03170 are separated by 103 nucleotides HGI48_RS03155: HGI48_RS03155 - octaprenyl diphosphate synthase, at 667,989 to 668,960 _RS03155 HGI48_RS03160: HGI48_RS03160 - 50S ribosomal protein L21, at 669,221 to 669,532 _RS03160 HGI48_RS03165: HGI48_RS03165 - 50S ribosomal protein L27, at 669,552 to 669,809 _RS03165 HGI48_RS03170: HGI48_RS03170 - DMT family transporter, at 669,913 to 670,857 _RS03170 Position (kb) 669 670Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 669.002 kb on - strandat 669.002 kb on - strandat 669.035 kb on - strandat 669.047 kb on - strandat 669.066 kb on + strandat 669.067 kb on - strandat 669.087 kb on + strandat 669.882 kb on - strandat 669.962 kb on + strandat 669.963 kb on - strandat 670.018 kb on + strandat 670.019 kb on - strandat 670.019 kb on - strandat 670.019 kb on - strand, within HGI48_RS03170at 670.019 kb on - strand, within HGI48_RS03170at 670.019 kb on - strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strandat 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.020 kb on + strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strandat 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strandat 670.021 kb on - strand, within HGI48_RS03170at 670.021 kb on - strand, within HGI48_RS03170at 670.023 kb on + strand, within HGI48_RS03170at 670.023 kb on + strand, within HGI48_RS03170at 670.024 kb on - strand, within HGI48_RS03170at 670.024 kb on - strand, within HGI48_RS03170at 670.024 kb on - strand, within HGI48_RS03170at 670.024 kb on - strand, within HGI48_RS03170at 670.034 kb on - strand, within HGI48_RS03170at 670.076 kb on - strand, within HGI48_RS03170at 670.179 kb on + strandat 670.179 kb on + strand, within HGI48_RS03170at 670.180 kb on - strandat 670.180 kb on - strand, within HGI48_RS03170at 670.298 kb on + strand, within HGI48_RS03170at 670.298 kb on + strand, within HGI48_RS03170at 670.299 kb on - strand, within HGI48_RS03170at 670.299 kb on - strand, within HGI48_RS03170at 670.347 kb on + strand, within HGI48_RS03170at 670.348 kb on - strand, within HGI48_RS03170at 670.381 kb on + strand, within HGI48_RS03170at 670.432 kb on + strand, within HGI48_RS03170at 670.495 kb on + strand, within HGI48_RS03170at 670.495 kb on + strand, within HGI48_RS03170at 670.496 kb on - strand, within HGI48_RS03170at 670.496 kb on - strand, within HGI48_RS03170at 670.496 kb on - strand, within HGI48_RS03170at 670.496 kb on - strand, within HGI48_RS03170at 670.498 kb on - strandat 670.498 kb on - strand, within HGI48_RS03170at 670.498 kb on - strand, within HGI48_RS03170at 670.509 kb on - strand, within HGI48_RS03170at 670.509 kb on - strand, within HGI48_RS03170at 670.509 kb on - strand, within HGI48_RS03170at 670.515 kb on + strand, within HGI48_RS03170at 670.516 kb on - strand, within HGI48_RS03170at 670.516 kb on - strand, within HGI48_RS03170at 670.557 kb on + strand, within HGI48_RS03170at 670.558 kb on - strand, within HGI48_RS03170at 670.578 kb on - strand, within HGI48_RS03170at 670.659 kb on + strand, within HGI48_RS03170at 670.660 kb on - strand, within HGI48_RS03170at 670.668 kb on + strand, within HGI48_RS03170at 670.669 kb on - strand, within HGI48_RS03170at 670.669 kb on - strand, within HGI48_RS03170at 670.673 kb on + strand, within HGI48_RS03170at 670.674 kb on - strand, within HGI48_RS03170at 670.687 kb on - strand, within HGI48_RS03170at 670.731 kb on - strand, within HGI48_RS03170at 670.762 kb on + strand, within HGI48_RS03170

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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669,002 - +1.4
669,002 - -0.1
669,035 - -0.7
669,047 - -0.3
669,066 + -0.7
669,067 - -3.2
669,087 + +0.2
669,882 - +0.7
669,962 + -0.7
669,963 - +1.7
670,018 + -0.7
670,019 - +1.3
670,019 - +0.9
670,019 - HGI48_RS03170 0.11 -0.8
670,019 - HGI48_RS03170 0.11 -0.8
670,019 - HGI48_RS03170 0.11 -1.4
670,020 + HGI48_RS03170 0.11 +0.9
670,020 + HGI48_RS03170 0.11 +0.3
670,020 + +0.9
670,020 + HGI48_RS03170 0.11 -3.4
670,020 + HGI48_RS03170 0.11 -1.4
670,020 + HGI48_RS03170 0.11 -0.1
670,020 + HGI48_RS03170 0.11 +0.6
670,020 + HGI48_RS03170 0.11 -0.5
670,020 + HGI48_RS03170 0.11 -0.4
670,020 + HGI48_RS03170 0.11 +0.2
670,020 + HGI48_RS03170 0.11 -1.2
670,020 + HGI48_RS03170 0.11 +0.6
670,020 + HGI48_RS03170 0.11 -0.7
670,020 + HGI48_RS03170 0.11 +0.2
670,020 + HGI48_RS03170 0.11 -2.0
670,020 + HGI48_RS03170 0.11 -0.0
670,020 + HGI48_RS03170 0.11 -0.3
670,021 - HGI48_RS03170 0.11 +0.4
670,021 - HGI48_RS03170 0.11 -1.9
670,021 - HGI48_RS03170 0.11 -1.1
670,021 - HGI48_RS03170 0.11 -1.1
670,021 - +0.3
670,021 - HGI48_RS03170 0.11 +0.1
670,021 - HGI48_RS03170 0.11 -0.7
670,021 - HGI48_RS03170 0.11 -1.4
670,021 - HGI48_RS03170 0.11 -2.4
670,021 - HGI48_RS03170 0.11 -1.9
670,021 - HGI48_RS03170 0.11 -1.1
670,021 - HGI48_RS03170 0.11 -2.4
670,021 - HGI48_RS03170 0.11 -0.2
670,021 - HGI48_RS03170 0.11 -1.8
670,021 - +0.3
670,021 - HGI48_RS03170 0.11 +0.0
670,021 - HGI48_RS03170 0.11 +1.9
670,023 + HGI48_RS03170 0.12 +0.9
670,023 + HGI48_RS03170 0.12 -0.1
670,024 - HGI48_RS03170 0.12 +1.2
670,024 - HGI48_RS03170 0.12 -1.9
670,024 - HGI48_RS03170 0.12 +0.7
670,024 - HGI48_RS03170 0.12 +0.5
670,034 - HGI48_RS03170 0.13 -2.3
670,076 - HGI48_RS03170 0.17 +0.1
670,179 + -0.1
670,179 + HGI48_RS03170 0.28 -1.5
670,180 - +1.3
670,180 - HGI48_RS03170 0.28 +0.9
670,298 + HGI48_RS03170 0.41 +1.9
670,298 + HGI48_RS03170 0.41 +0.7
670,299 - HGI48_RS03170 0.41 -0.8
670,299 - HGI48_RS03170 0.41 -0.3
670,347 + HGI48_RS03170 0.46 +0.1
670,348 - HGI48_RS03170 0.46 +0.1
670,381 + HGI48_RS03170 0.50 +0.0
670,432 + HGI48_RS03170 0.55 -0.3
670,495 + HGI48_RS03170 0.62 +0.2
670,495 + HGI48_RS03170 0.62 -1.0
670,496 - HGI48_RS03170 0.62 -0.3
670,496 - HGI48_RS03170 0.62 -2.1
670,496 - HGI48_RS03170 0.62 -1.1
670,496 - HGI48_RS03170 0.62 -1.7
670,498 - +0.3
670,498 - HGI48_RS03170 0.62 +0.1
670,498 - HGI48_RS03170 0.62 -0.1
670,509 - HGI48_RS03170 0.63 -0.7
670,509 - HGI48_RS03170 0.63 -1.7
670,509 - HGI48_RS03170 0.63 +0.4
670,515 + HGI48_RS03170 0.64 -0.3
670,516 - HGI48_RS03170 0.64 -0.1
670,516 - HGI48_RS03170 0.64 -0.7
670,557 + HGI48_RS03170 0.68 +0.7
670,558 - HGI48_RS03170 0.68 +0.5
670,578 - HGI48_RS03170 0.70 +0.5
670,659 + HGI48_RS03170 0.79 -0.4
670,660 - HGI48_RS03170 0.79 -0.4
670,668 + HGI48_RS03170 0.80 -1.1
670,669 - HGI48_RS03170 0.80 -0.7
670,669 - HGI48_RS03170 0.80 -2.3
670,673 + HGI48_RS03170 0.80 -2.3
670,674 - HGI48_RS03170 0.81 -2.3
670,687 - HGI48_RS03170 0.82 -0.1
670,731 - HGI48_RS03170 0.87 +0.2
670,762 + HGI48_RS03170 0.90 -1.4

Or see this region's nucleotide sequence