Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02735 and HGI48_RS02740 are separated by 176 nucleotides HGI48_RS02740 and HGI48_RS02745 are separated by 130 nucleotides HGI48_RS02745 and HGI48_RS02750 are separated by 109 nucleotides
HGI48_RS02735: HGI48_RS02735 - repressor LexA, at 591,647 to 592,258
_RS02735
HGI48_RS02740: HGI48_RS02740 - zinc uptake transcriptional repressor Zur, at 592,435 to 592,944
_RS02740
HGI48_RS02745: HGI48_RS02745 - pirin family protein, at 593,075 to 593,785
_RS02745
HGI48_RS02750: HGI48_RS02750 - LysR family transcriptional regulator, at 593,895 to 594,791
_RS02750
Position (kb) 593
594 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 592.256 kb on + strand at 592.256 kb on + strand at 592.270 kb on - strand at 592.270 kb on - strand at 592.270 kb on - strand at 592.301 kb on + strand at 592.302 kb on - strand at 592.302 kb on - strand at 592.374 kb on + strand at 592.375 kb on - strand at 592.375 kb on - strand at 592.375 kb on - strand at 592.399 kb on + strand at 592.400 kb on - strand at 592.400 kb on - strand at 592.400 kb on - strand at 592.413 kb on - strand at 592.470 kb on + strand at 592.470 kb on + strand at 592.471 kb on - strand at 592.471 kb on - strand at 592.471 kb on - strand at 592.471 kb on - strand at 592.471 kb on - strand at 592.471 kb on - strand at 592.483 kb on - strand at 592.483 kb on - strand at 592.483 kb on - strand at 592.483 kb on - strand at 592.542 kb on + strand, within HGI48_RS02740 at 592.542 kb on + strand, within HGI48_RS02740 at 592.542 kb on + strand, within HGI48_RS02740 at 592.543 kb on - strand, within HGI48_RS02740 at 592.641 kb on + strand, within HGI48_RS02740 at 592.641 kb on + strand, within HGI48_RS02740 at 592.656 kb on + strand, within HGI48_RS02740 at 592.656 kb on + strand, within HGI48_RS02740 at 592.656 kb on + strand, within HGI48_RS02740 at 592.656 kb on + strand, within HGI48_RS02740 at 592.656 kb on + strand, within HGI48_RS02740 at 592.657 kb on - strand at 592.657 kb on - strand, within HGI48_RS02740 at 592.657 kb on - strand, within HGI48_RS02740 at 592.691 kb on + strand, within HGI48_RS02740 at 592.691 kb on + strand, within HGI48_RS02740 at 592.691 kb on + strand, within HGI48_RS02740 at 592.691 kb on + strand, within HGI48_RS02740 at 592.691 kb on + strand, within HGI48_RS02740 at 592.692 kb on - strand, within HGI48_RS02740 at 592.692 kb on - strand, within HGI48_RS02740 at 592.692 kb on - strand, within HGI48_RS02740 at 592.755 kb on - strand, within HGI48_RS02740 at 592.811 kb on + strand, within HGI48_RS02740 at 592.811 kb on + strand, within HGI48_RS02740 at 592.811 kb on + strand, within HGI48_RS02740 at 592.950 kb on + strand at 592.950 kb on + strand at 592.951 kb on - strand at 592.986 kb on + strand at 592.986 kb on + strand at 592.986 kb on + strand at 592.986 kb on + strand at 592.987 kb on - strand at 592.987 kb on - strand at 592.987 kb on - strand at 593.000 kb on - strand at 593.076 kb on + strand at 593.091 kb on - strand at 593.128 kb on + strand at 593.129 kb on - strand at 593.174 kb on + strand, within HGI48_RS02745 at 593.175 kb on - strand, within HGI48_RS02745 at 593.197 kb on + strand, within HGI48_RS02745 at 593.198 kb on - strand, within HGI48_RS02745 at 593.224 kb on - strand, within HGI48_RS02745 at 593.234 kb on + strand, within HGI48_RS02745 at 593.234 kb on + strand, within HGI48_RS02745 at 593.234 kb on + strand at 593.234 kb on + strand, within HGI48_RS02745 at 593.235 kb on - strand, within HGI48_RS02745 at 593.235 kb on - strand, within HGI48_RS02745 at 593.238 kb on + strand, within HGI48_RS02745 at 593.238 kb on + strand, within HGI48_RS02745 at 593.239 kb on - strand, within HGI48_RS02745 at 593.266 kb on + strand, within HGI48_RS02745 at 593.266 kb on + strand at 593.267 kb on - strand, within HGI48_RS02745 at 593.267 kb on - strand, within HGI48_RS02745 at 593.267 kb on - strand, within HGI48_RS02745 at 593.267 kb on - strand, within HGI48_RS02745 at 593.267 kb on - strand at 593.470 kb on + strand, within HGI48_RS02745 at 593.484 kb on + strand, within HGI48_RS02745 at 593.485 kb on - strand, within HGI48_RS02745 at 593.539 kb on + strand, within HGI48_RS02745 at 593.588 kb on - strand, within HGI48_RS02745 at 593.596 kb on + strand, within HGI48_RS02745 at 593.611 kb on - strand, within HGI48_RS02745 at 593.611 kb on - strand, within HGI48_RS02745 at 593.684 kb on + strand, within HGI48_RS02745 at 593.685 kb on - strand, within HGI48_RS02745 at 593.685 kb on - strand, within HGI48_RS02745 at 593.700 kb on + strand at 593.700 kb on + strand, within HGI48_RS02745 at 593.700 kb on + strand, within HGI48_RS02745 at 593.700 kb on + strand, within HGI48_RS02745 at 593.700 kb on + strand at 593.701 kb on - strand, within HGI48_RS02745 at 593.721 kb on + strand at 593.721 kb on + strand at 593.722 kb on - strand at 593.722 kb on - strand at 593.722 kb on - strand at 593.742 kb on + strand at 593.788 kb on + strand at 593.789 kb on - strand at 593.806 kb on - strand at 593.812 kb on - strand at 593.820 kb on - strand at 593.822 kb on + strand at 593.822 kb on + strand at 593.822 kb on + strand at 593.822 kb on + strand at 593.822 kb on + strand at 593.823 kb on - strand at 593.823 kb on - strand at 593.823 kb on - strand at 593.823 kb on - strand at 593.823 kb on - strand at 593.920 kb on + strand at 593.920 kb on + strand at 593.920 kb on + strand at 593.921 kb on - strand at 593.921 kb on - strand at 593.921 kb on - strand at 593.921 kb on - strand at 593.930 kb on - strand at 594.012 kb on + strand, within HGI48_RS02750 at 594.012 kb on + strand at 594.012 kb on + strand, within HGI48_RS02750 at 594.012 kb on + strand, within HGI48_RS02750 at 594.013 kb on - strand, within HGI48_RS02750 at 594.013 kb on - strand, within HGI48_RS02750 at 594.013 kb on - strand, within HGI48_RS02750 at 594.013 kb on - strand, within HGI48_RS02750 at 594.014 kb on + strand, within HGI48_RS02750 at 594.014 kb on + strand, within HGI48_RS02750 at 594.015 kb on - strand, within HGI48_RS02750 at 594.015 kb on - strand, within HGI48_RS02750 at 594.015 kb on - strand, within HGI48_RS02750 at 594.015 kb on - strand, within HGI48_RS02750 at 594.250 kb on + strand, within HGI48_RS02750 at 594.251 kb on - strand, within HGI48_RS02750 at 594.397 kb on - strand, within HGI48_RS02750 at 594.397 kb on - strand at 594.414 kb on + strand, within HGI48_RS02750 at 594.414 kb on + strand, within HGI48_RS02750 at 594.414 kb on + strand, within HGI48_RS02750 at 594.414 kb on + strand, within HGI48_RS02750 at 594.415 kb on - strand, within HGI48_RS02750 at 594.415 kb on - strand, within HGI48_RS02750 at 594.415 kb on - strand, within HGI48_RS02750 at 594.415 kb on - strand, within HGI48_RS02750 at 594.415 kb on - strand, within HGI48_RS02750 at 594.483 kb on + strand, within HGI48_RS02750 at 594.483 kb on + strand, within HGI48_RS02750 at 594.484 kb on - strand, within HGI48_RS02750 at 594.484 kb on - strand, within HGI48_RS02750 at 594.542 kb on - strand, within HGI48_RS02750 at 594.630 kb on + strand, within HGI48_RS02750 at 594.630 kb on + strand, within HGI48_RS02750 at 594.707 kb on + strand at 594.707 kb on + strand at 594.707 kb on + strand at 594.708 kb on - strand at 594.708 kb on - strand at 594.708 kb on - strand at 594.708 kb on - strand at 594.708 kb on - strand at 594.708 kb on - strand at 594.708 kb on - strand at 594.708 kb on - strand at 594.708 kb on - strand at 594.731 kb on + strand at 594.775 kb on + strand at 594.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 592,256 + -1.2 592,256 + +0.3 592,270 - -0.8 592,270 - +0.9 592,270 - -0.9 592,301 + -0.4 592,302 - +0.7 592,302 - -0.7 592,374 + -0.9 592,375 - -1.2 592,375 - +0.9 592,375 - -0.5 592,399 + -0.6 592,400 - +0.7 592,400 - +0.4 592,400 - -0.1 592,413 - -0.4 592,470 + +0.4 592,470 + +0.4 592,471 - -1.4 592,471 - +1.9 592,471 - -1.4 592,471 - -1.4 592,471 - -1.5 592,471 - -1.1 592,483 - +0.6 592,483 - -0.4 592,483 - -0.3 592,483 - +0.3 592,542 + HGI48_RS02740 0.21 -2.1 592,542 + HGI48_RS02740 0.21 +1.5 592,542 + HGI48_RS02740 0.21 -1.1 592,543 - HGI48_RS02740 0.21 -1.6 592,641 + HGI48_RS02740 0.40 -0.6 592,641 + HGI48_RS02740 0.40 +1.2 592,656 + HGI48_RS02740 0.43 +0.2 592,656 + HGI48_RS02740 0.43 -1.5 592,656 + HGI48_RS02740 0.43 -0.3 592,656 + HGI48_RS02740 0.43 +2.3 592,656 + HGI48_RS02740 0.43 -0.4 592,657 - +0.9 592,657 - HGI48_RS02740 0.44 -2.1 592,657 - HGI48_RS02740 0.44 -1.0 592,691 + HGI48_RS02740 0.50 -0.3 592,691 + HGI48_RS02740 0.50 +1.5 592,691 + HGI48_RS02740 0.50 -0.6 592,691 + HGI48_RS02740 0.50 -0.1 592,691 + HGI48_RS02740 0.50 -0.6 592,692 - HGI48_RS02740 0.50 +0.2 592,692 - HGI48_RS02740 0.50 -0.1 592,692 - HGI48_RS02740 0.50 -1.1 592,755 - HGI48_RS02740 0.63 +0.7 592,811 + HGI48_RS02740 0.74 -1.1 592,811 + HGI48_RS02740 0.74 -1.2 592,811 + HGI48_RS02740 0.74 -0.1 592,950 + -1.9 592,950 + -0.0 592,951 - +0.4 592,986 + -0.6 592,986 + +0.2 592,986 + -1.4 592,986 + -0.6 592,987 - -1.2 592,987 - -0.6 592,987 - -0.1 593,000 - -0.4 593,076 + -1.1 593,091 - +0.4 593,128 + -0.3 593,129 - -0.1 593,174 + HGI48_RS02745 0.14 -1.4 593,175 - HGI48_RS02745 0.14 -1.4 593,197 + HGI48_RS02745 0.17 -0.1 593,198 - HGI48_RS02745 0.17 -2.5 593,224 - HGI48_RS02745 0.21 -1.2 593,234 + HGI48_RS02745 0.22 -0.6 593,234 + HGI48_RS02745 0.22 -1.9 593,234 + -0.1 593,234 + HGI48_RS02745 0.22 -2.6 593,235 - HGI48_RS02745 0.23 +0.2 593,235 - HGI48_RS02745 0.23 -1.1 593,238 + HGI48_RS02745 0.23 -1.8 593,238 + HGI48_RS02745 0.23 -1.1 593,239 - HGI48_RS02745 0.23 +0.4 593,266 + HGI48_RS02745 0.27 -1.1 593,266 + -0.1 593,267 - HGI48_RS02745 0.27 +0.9 593,267 - HGI48_RS02745 0.27 +0.7 593,267 - HGI48_RS02745 0.27 -1.1 593,267 - HGI48_RS02745 0.27 -1.1 593,267 - +0.9 593,470 + HGI48_RS02745 0.56 -0.6 593,484 + HGI48_RS02745 0.58 -0.9 593,485 - HGI48_RS02745 0.58 -0.4 593,539 + HGI48_RS02745 0.65 -0.5 593,588 - HGI48_RS02745 0.72 -0.9 593,596 + HGI48_RS02745 0.73 -0.8 593,611 - HGI48_RS02745 0.75 -0.6 593,611 - HGI48_RS02745 0.75 -1.1 593,684 + HGI48_RS02745 0.86 +0.5 593,685 - HGI48_RS02745 0.86 +0.4 593,685 - HGI48_RS02745 0.86 -0.2 593,700 + -0.6 593,700 + HGI48_RS02745 0.88 -1.1 593,700 + HGI48_RS02745 0.88 -0.4 593,700 + HGI48_RS02745 0.88 -1.1 593,700 + +0.4 593,701 - HGI48_RS02745 0.88 +0.0 593,721 + -0.5 593,721 + +0.7 593,722 - -0.1 593,722 - -1.4 593,722 - -1.6 593,742 + +0.0 593,788 + +1.5 593,789 - +0.5 593,806 - -2.2 593,812 - -0.1 593,820 - -0.9 593,822 + +1.4 593,822 + -1.2 593,822 + -0.1 593,822 + +0.9 593,822 + -0.6 593,823 - +1.4 593,823 - -1.1 593,823 - -1.1 593,823 - -0.4 593,823 - -2.4 593,920 + -0.1 593,920 + +0.7 593,920 + -0.1 593,921 - +1.5 593,921 - +0.6 593,921 - -0.6 593,921 - -0.1 593,930 - +0.6 594,012 + HGI48_RS02750 0.13 -0.4 594,012 + -0.1 594,012 + HGI48_RS02750 0.13 -0.4 594,012 + HGI48_RS02750 0.13 +0.4 594,013 - HGI48_RS02750 0.13 +2.0 594,013 - HGI48_RS02750 0.13 -0.2 594,013 - HGI48_RS02750 0.13 +0.4 594,013 - HGI48_RS02750 0.13 -1.1 594,014 + HGI48_RS02750 0.13 +0.6 594,014 + HGI48_RS02750 0.13 -1.2 594,015 - HGI48_RS02750 0.13 +1.2 594,015 - HGI48_RS02750 0.13 -0.9 594,015 - HGI48_RS02750 0.13 -0.2 594,015 - HGI48_RS02750 0.13 +0.0 594,250 + HGI48_RS02750 0.40 -0.4 594,251 - HGI48_RS02750 0.40 +0.7 594,397 - HGI48_RS02750 0.56 +0.3 594,397 - +1.7 594,414 + HGI48_RS02750 0.58 -0.5 594,414 + HGI48_RS02750 0.58 -0.3 594,414 + HGI48_RS02750 0.58 +3.0 594,414 + HGI48_RS02750 0.58 +0.1 594,415 - HGI48_RS02750 0.58 -1.4 594,415 - HGI48_RS02750 0.58 -0.6 594,415 - HGI48_RS02750 0.58 -0.5 594,415 - HGI48_RS02750 0.58 -1.1 594,415 - HGI48_RS02750 0.58 -0.1 594,483 + HGI48_RS02750 0.66 +1.1 594,483 + HGI48_RS02750 0.66 +0.9 594,484 - HGI48_RS02750 0.66 +0.1 594,484 - HGI48_RS02750 0.66 -1.5 594,542 - HGI48_RS02750 0.72 +3.2 594,630 + HGI48_RS02750 0.82 +1.8 594,630 + HGI48_RS02750 0.82 -0.4 594,707 + +0.2 594,707 + +0.9 594,707 + -0.1 594,708 - +2.2 594,708 - +0.1 594,708 - +0.5 594,708 - -0.3 594,708 - +0.7 594,708 - +0.5 594,708 - -0.6 594,708 - -1.6 594,708 - +0.5 594,731 + -1.1 594,775 + -0.3 594,776 - -1.4
Or see this region's nucleotide sequence