Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02645 and HGI48_RS02650 are separated by 26 nucleotides HGI48_RS02650 and HGI48_RS02655 are separated by 854 nucleotides
HGI48_RS02645: HGI48_RS02645 - DUF4832 domain-containing protein, at 573,559 to 574,953
_RS02645
HGI48_RS02650: HGI48_RS02650 - serine acetyltransferase, at 574,980 to 575,480
_RS02650
HGI48_RS02655: HGI48_RS02655 - helix-turn-helix transcriptional regulator, at 576,335 to 576,601
_RS02655
Position (kb) 574
575
576 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 573.992 kb on + strand, within HGI48_RS02645 at 573.993 kb on - strand, within HGI48_RS02645 at 574.003 kb on + strand, within HGI48_RS02645 at 574.003 kb on + strand, within HGI48_RS02645 at 574.047 kb on + strand, within HGI48_RS02645 at 574.048 kb on - strand, within HGI48_RS02645 at 574.063 kb on + strand, within HGI48_RS02645 at 574.063 kb on + strand, within HGI48_RS02645 at 574.064 kb on - strand, within HGI48_RS02645 at 574.064 kb on - strand, within HGI48_RS02645 at 574.064 kb on - strand, within HGI48_RS02645 at 574.064 kb on - strand, within HGI48_RS02645 at 574.064 kb on - strand, within HGI48_RS02645 at 574.082 kb on + strand, within HGI48_RS02645 at 574.083 kb on - strand, within HGI48_RS02645 at 574.083 kb on - strand, within HGI48_RS02645 at 574.125 kb on + strand, within HGI48_RS02645 at 574.126 kb on - strand at 574.145 kb on - strand, within HGI48_RS02645 at 574.145 kb on - strand, within HGI48_RS02645 at 574.146 kb on + strand, within HGI48_RS02645 at 574.146 kb on + strand, within HGI48_RS02645 at 574.146 kb on + strand, within HGI48_RS02645 at 574.146 kb on + strand, within HGI48_RS02645 at 574.147 kb on - strand, within HGI48_RS02645 at 574.147 kb on - strand, within HGI48_RS02645 at 574.147 kb on - strand, within HGI48_RS02645 at 574.147 kb on - strand at 574.147 kb on - strand, within HGI48_RS02645 at 574.147 kb on - strand, within HGI48_RS02645 at 574.147 kb on - strand, within HGI48_RS02645 at 574.147 kb on - strand, within HGI48_RS02645 at 574.147 kb on - strand, within HGI48_RS02645 at 574.161 kb on - strand, within HGI48_RS02645 at 574.161 kb on - strand, within HGI48_RS02645 at 574.164 kb on + strand, within HGI48_RS02645 at 574.164 kb on + strand, within HGI48_RS02645 at 574.164 kb on + strand, within HGI48_RS02645 at 574.164 kb on + strand, within HGI48_RS02645 at 574.164 kb on + strand at 574.165 kb on - strand, within HGI48_RS02645 at 574.165 kb on - strand, within HGI48_RS02645 at 574.165 kb on - strand, within HGI48_RS02645 at 574.165 kb on - strand at 574.165 kb on - strand, within HGI48_RS02645 at 574.165 kb on - strand, within HGI48_RS02645 at 574.165 kb on - strand, within HGI48_RS02645 at 574.168 kb on + strand, within HGI48_RS02645 at 574.169 kb on - strand, within HGI48_RS02645 at 574.180 kb on + strand, within HGI48_RS02645 at 574.180 kb on + strand at 574.181 kb on - strand, within HGI48_RS02645 at 574.297 kb on - strand, within HGI48_RS02645 at 574.320 kb on + strand, within HGI48_RS02645 at 574.320 kb on + strand at 574.320 kb on + strand, within HGI48_RS02645 at 574.320 kb on + strand, within HGI48_RS02645 at 574.320 kb on + strand, within HGI48_RS02645 at 574.320 kb on + strand, within HGI48_RS02645 at 574.321 kb on - strand, within HGI48_RS02645 at 574.321 kb on - strand at 574.321 kb on - strand, within HGI48_RS02645 at 574.321 kb on - strand, within HGI48_RS02645 at 574.321 kb on - strand, within HGI48_RS02645 at 574.321 kb on - strand, within HGI48_RS02645 at 574.321 kb on - strand, within HGI48_RS02645 at 574.321 kb on - strand, within HGI48_RS02645 at 574.423 kb on + strand, within HGI48_RS02645 at 574.424 kb on - strand, within HGI48_RS02645 at 574.424 kb on - strand, within HGI48_RS02645 at 574.424 kb on - strand, within HGI48_RS02645 at 574.424 kb on - strand, within HGI48_RS02645 at 574.425 kb on + strand, within HGI48_RS02645 at 574.425 kb on + strand, within HGI48_RS02645 at 574.425 kb on + strand, within HGI48_RS02645 at 574.425 kb on + strand, within HGI48_RS02645 at 574.425 kb on + strand, within HGI48_RS02645 at 574.425 kb on + strand, within HGI48_RS02645 at 574.425 kb on + strand, within HGI48_RS02645 at 574.453 kb on + strand, within HGI48_RS02645 at 574.453 kb on + strand, within HGI48_RS02645 at 574.454 kb on - strand, within HGI48_RS02645 at 574.454 kb on - strand at 574.455 kb on + strand, within HGI48_RS02645 at 574.455 kb on + strand, within HGI48_RS02645 at 574.455 kb on + strand, within HGI48_RS02645 at 574.456 kb on - strand, within HGI48_RS02645 at 574.456 kb on - strand, within HGI48_RS02645 at 574.666 kb on - strand, within HGI48_RS02645 at 574.696 kb on + strand, within HGI48_RS02645 at 574.696 kb on + strand, within HGI48_RS02645 at 574.697 kb on - strand, within HGI48_RS02645 at 574.697 kb on - strand, within HGI48_RS02645 at 574.697 kb on - strand, within HGI48_RS02645 at 574.697 kb on - strand, within HGI48_RS02645 at 574.765 kb on - strand, within HGI48_RS02645 at 574.791 kb on + strand, within HGI48_RS02645 at 574.792 kb on - strand, within HGI48_RS02645 at 574.840 kb on + strand at 574.841 kb on - strand at 574.842 kb on + strand at 574.842 kb on + strand at 574.842 kb on + strand at 574.843 kb on - strand at 574.843 kb on - strand at 574.843 kb on - strand at 574.843 kb on - strand at 574.846 kb on - strand at 574.969 kb on + strand at 574.969 kb on + strand at 574.969 kb on + strand at 574.969 kb on + strand at 574.970 kb on - strand at 574.970 kb on - strand at 574.973 kb on + strand at 574.973 kb on + strand at 574.974 kb on - strand at 574.974 kb on - strand at 574.974 kb on - strand at 574.974 kb on - strand at 574.979 kb on + strand at 574.979 kb on + strand at 574.980 kb on - strand at 574.980 kb on - strand at 574.980 kb on - strand at 575.002 kb on + strand at 575.002 kb on + strand at 575.002 kb on + strand at 575.002 kb on + strand at 575.003 kb on - strand at 575.003 kb on - strand at 575.014 kb on + strand at 575.048 kb on - strand, within HGI48_RS02650 at 575.048 kb on - strand, within HGI48_RS02650 at 575.050 kb on + strand, within HGI48_RS02650 at 575.050 kb on + strand, within HGI48_RS02650 at 575.051 kb on - strand, within HGI48_RS02650 at 575.132 kb on + strand, within HGI48_RS02650 at 575.174 kb on + strand, within HGI48_RS02650 at 575.174 kb on + strand, within HGI48_RS02650 at 575.175 kb on - strand, within HGI48_RS02650 at 575.203 kb on + strand, within HGI48_RS02650 at 575.204 kb on - strand, within HGI48_RS02650 at 575.258 kb on + strand at 575.258 kb on + strand, within HGI48_RS02650 at 575.258 kb on + strand, within HGI48_RS02650 at 575.259 kb on - strand, within HGI48_RS02650 at 575.263 kb on + strand, within HGI48_RS02650 at 575.285 kb on + strand, within HGI48_RS02650 at 575.286 kb on - strand, within HGI48_RS02650 at 575.294 kb on - strand, within HGI48_RS02650 at 575.294 kb on - strand, within HGI48_RS02650 at 575.384 kb on - strand, within HGI48_RS02650 at 575.395 kb on + strand, within HGI48_RS02650 at 575.396 kb on - strand, within HGI48_RS02650 at 575.396 kb on - strand at 575.396 kb on - strand, within HGI48_RS02650 at 575.514 kb on + strand at 575.514 kb on + strand at 575.515 kb on - strand at 575.515 kb on - strand at 575.515 kb on - strand at 575.515 kb on - strand at 575.515 kb on - strand at 575.519 kb on - strand at 575.524 kb on + strand at 575.592 kb on - strand at 575.592 kb on - strand at 575.595 kb on + strand at 575.596 kb on - strand at 575.596 kb on - strand at 575.596 kb on - strand at 575.596 kb on - strand at 575.596 kb on - strand at 575.605 kb on + strand at 575.606 kb on - strand at 575.619 kb on + strand at 575.619 kb on + strand at 575.620 kb on - strand at 575.620 kb on - strand at 575.764 kb on + strand at 575.772 kb on - strand at 575.777 kb on + strand at 575.778 kb on - strand at 575.782 kb on + strand at 575.782 kb on + strand at 575.782 kb on + strand at 575.782 kb on + strand at 575.783 kb on - strand at 575.787 kb on - strand at 575.787 kb on - strand at 575.787 kb on - strand at 575.817 kb on + strand at 575.834 kb on - strand at 575.845 kb on + strand at 575.845 kb on + strand at 575.898 kb on - strand at 575.901 kb on + strand at 575.901 kb on + strand at 575.901 kb on + strand at 575.901 kb on + strand at 575.902 kb on - strand at 575.902 kb on - strand at 575.902 kb on - strand at 575.902 kb on - strand at 575.905 kb on + strand at 575.905 kb on + strand at 575.905 kb on + strand at 575.906 kb on - strand at 575.979 kb on + strand at 575.979 kb on + strand at 575.980 kb on - strand at 576.001 kb on + strand at 576.001 kb on + strand at 576.036 kb on + strand at 576.036 kb on + strand at 576.036 kb on + strand at 576.037 kb on - strand at 576.037 kb on - strand at 576.037 kb on - strand at 576.037 kb on - strand at 576.104 kb on + strand at 576.104 kb on + strand at 576.104 kb on + strand at 576.104 kb on + strand at 576.105 kb on - strand at 576.105 kb on - strand at 576.175 kb on - strand at 576.192 kb on + strand at 576.193 kb on - strand at 576.195 kb on - strand at 576.195 kb on - strand at 576.253 kb on - strand at 576.253 kb on - strand at 576.266 kb on + strand at 576.323 kb on - strand at 576.323 kb on - strand at 576.324 kb on + strand at 576.325 kb on - strand at 576.325 kb on - strand at 576.325 kb on - strand at 576.407 kb on - strand at 576.409 kb on - strand, within HGI48_RS02655 at 576.430 kb on + strand, within HGI48_RS02655 at 576.476 kb on + strand, within HGI48_RS02655 at 576.476 kb on + strand at 576.476 kb on + strand, within HGI48_RS02655 at 576.476 kb on + strand, within HGI48_RS02655 at 576.477 kb on - strand, within HGI48_RS02655 at 576.477 kb on - strand, within HGI48_RS02655 at 576.477 kb on - strand, within HGI48_RS02655 at 576.478 kb on + strand, within HGI48_RS02655
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 573,992 + HGI48_RS02645 0.31 -0.4 573,993 - HGI48_RS02645 0.31 -1.8 574,003 + HGI48_RS02645 0.32 +0.1 574,003 + HGI48_RS02645 0.32 +0.7 574,047 + HGI48_RS02645 0.35 -0.6 574,048 - HGI48_RS02645 0.35 +0.2 574,063 + HGI48_RS02645 0.36 +0.1 574,063 + HGI48_RS02645 0.36 -0.3 574,064 - HGI48_RS02645 0.36 +0.1 574,064 - HGI48_RS02645 0.36 +0.3 574,064 - HGI48_RS02645 0.36 -1.2 574,064 - HGI48_RS02645 0.36 -0.4 574,064 - HGI48_RS02645 0.36 +0.6 574,082 + HGI48_RS02645 0.37 -0.1 574,083 - HGI48_RS02645 0.38 -0.5 574,083 - HGI48_RS02645 0.38 +1.1 574,125 + HGI48_RS02645 0.41 -1.4 574,126 - -0.1 574,145 - HGI48_RS02645 0.42 -1.1 574,145 - HGI48_RS02645 0.42 -0.2 574,146 + HGI48_RS02645 0.42 -0.1 574,146 + HGI48_RS02645 0.42 -0.6 574,146 + HGI48_RS02645 0.42 -1.5 574,146 + HGI48_RS02645 0.42 +1.5 574,147 - HGI48_RS02645 0.42 +1.5 574,147 - HGI48_RS02645 0.42 +0.6 574,147 - HGI48_RS02645 0.42 -2.1 574,147 - +0.4 574,147 - HGI48_RS02645 0.42 -1.4 574,147 - HGI48_RS02645 0.42 -0.1 574,147 - HGI48_RS02645 0.42 -0.8 574,147 - HGI48_RS02645 0.42 -1.1 574,147 - HGI48_RS02645 0.42 +0.0 574,161 - HGI48_RS02645 0.43 -0.1 574,161 - HGI48_RS02645 0.43 -0.8 574,164 + HGI48_RS02645 0.43 -0.4 574,164 + HGI48_RS02645 0.43 -0.4 574,164 + HGI48_RS02645 0.43 -1.4 574,164 + HGI48_RS02645 0.43 +0.4 574,164 + +0.9 574,165 - HGI48_RS02645 0.43 +0.7 574,165 - HGI48_RS02645 0.43 -1.3 574,165 - HGI48_RS02645 0.43 +2.8 574,165 - +1.5 574,165 - HGI48_RS02645 0.43 -0.9 574,165 - HGI48_RS02645 0.43 +0.1 574,165 - HGI48_RS02645 0.43 +0.2 574,168 + HGI48_RS02645 0.44 -1.4 574,169 - HGI48_RS02645 0.44 -0.7 574,180 + HGI48_RS02645 0.45 -1.4 574,180 + -0.1 574,181 - HGI48_RS02645 0.45 +0.2 574,297 - HGI48_RS02645 0.53 -0.1 574,320 + HGI48_RS02645 0.55 +1.8 574,320 + +1.5 574,320 + HGI48_RS02645 0.55 +1.8 574,320 + HGI48_RS02645 0.55 -0.0 574,320 + HGI48_RS02645 0.55 -0.3 574,320 + HGI48_RS02645 0.55 -0.7 574,321 - HGI48_RS02645 0.55 -2.5 574,321 - +1.5 574,321 - HGI48_RS02645 0.55 -0.9 574,321 - HGI48_RS02645 0.55 -0.3 574,321 - HGI48_RS02645 0.55 +3.3 574,321 - HGI48_RS02645 0.55 -0.2 574,321 - HGI48_RS02645 0.55 -0.4 574,321 - HGI48_RS02645 0.55 +0.9 574,423 + HGI48_RS02645 0.62 -2.2 574,424 - HGI48_RS02645 0.62 -1.4 574,424 - HGI48_RS02645 0.62 -0.1 574,424 - HGI48_RS02645 0.62 +0.1 574,424 - HGI48_RS02645 0.62 -0.6 574,425 + HGI48_RS02645 0.62 +2.2 574,425 + HGI48_RS02645 0.62 -0.6 574,425 + HGI48_RS02645 0.62 -1.0 574,425 + HGI48_RS02645 0.62 -0.6 574,425 + HGI48_RS02645 0.62 -0.5 574,425 + HGI48_RS02645 0.62 -0.5 574,425 + HGI48_RS02645 0.62 -1.2 574,453 + HGI48_RS02645 0.64 -1.1 574,453 + HGI48_RS02645 0.64 +0.0 574,454 - HGI48_RS02645 0.64 +0.1 574,454 - -0.6 574,455 + HGI48_RS02645 0.64 +0.3 574,455 + HGI48_RS02645 0.64 -0.1 574,455 + HGI48_RS02645 0.64 -1.4 574,456 - HGI48_RS02645 0.64 -0.4 574,456 - HGI48_RS02645 0.64 -1.5 574,666 - HGI48_RS02645 0.79 +0.4 574,696 + HGI48_RS02645 0.82 +0.5 574,696 + HGI48_RS02645 0.82 +0.2 574,697 - HGI48_RS02645 0.82 -0.4 574,697 - HGI48_RS02645 0.82 -1.6 574,697 - HGI48_RS02645 0.82 +0.7 574,697 - HGI48_RS02645 0.82 -1.0 574,765 - HGI48_RS02645 0.86 -0.1 574,791 + HGI48_RS02645 0.88 -0.5 574,792 - HGI48_RS02645 0.88 -0.1 574,840 + -0.3 574,841 - -0.3 574,842 + +2.1 574,842 + -0.3 574,842 + -0.6 574,843 - +0.5 574,843 - -1.4 574,843 - -0.4 574,843 - +0.3 574,846 - +1.2 574,969 + +0.8 574,969 + -1.4 574,969 + -0.3 574,969 + -0.2 574,970 - +0.2 574,970 - -0.3 574,973 + -1.1 574,973 + -0.2 574,974 - -1.9 574,974 - -0.1 574,974 - -2.1 574,974 - -0.9 574,979 + +0.1 574,979 + -1.9 574,980 - +1.4 574,980 - -2.0 574,980 - +0.7 575,002 + -0.8 575,002 + +1.1 575,002 + +0.1 575,002 + -0.8 575,003 - -0.7 575,003 - -0.4 575,014 + -1.6 575,048 - HGI48_RS02650 0.14 -1.4 575,048 - HGI48_RS02650 0.14 -0.8 575,050 + HGI48_RS02650 0.14 +0.6 575,050 + HGI48_RS02650 0.14 +1.9 575,051 - HGI48_RS02650 0.14 +0.4 575,132 + HGI48_RS02650 0.30 -1.6 575,174 + HGI48_RS02650 0.39 -1.1 575,174 + HGI48_RS02650 0.39 -0.8 575,175 - HGI48_RS02650 0.39 -0.4 575,203 + HGI48_RS02650 0.45 +0.1 575,204 - HGI48_RS02650 0.45 -0.3 575,258 + +1.5 575,258 + HGI48_RS02650 0.55 +1.4 575,258 + HGI48_RS02650 0.55 +0.6 575,259 - HGI48_RS02650 0.56 -1.9 575,263 + HGI48_RS02650 0.56 +2.9 575,285 + HGI48_RS02650 0.61 -0.1 575,286 - HGI48_RS02650 0.61 +0.9 575,294 - HGI48_RS02650 0.63 -0.3 575,294 - HGI48_RS02650 0.63 +0.1 575,384 - HGI48_RS02650 0.81 -0.4 575,395 + HGI48_RS02650 0.83 -0.6 575,396 - HGI48_RS02650 0.83 -1.9 575,396 - -0.1 575,396 - HGI48_RS02650 0.83 +0.0 575,514 + +0.8 575,514 + +0.9 575,515 - +0.2 575,515 - -2.1 575,515 - -1.2 575,515 - +0.2 575,515 - -1.4 575,519 - -2.2 575,524 + +1.3 575,592 - +0.2 575,592 - -0.1 575,595 + +0.2 575,596 - +0.4 575,596 - -0.6 575,596 - +0.5 575,596 - +0.9 575,596 - -0.6 575,605 + +0.4 575,606 - +0.5 575,619 + +0.9 575,619 + -0.2 575,620 - +0.6 575,620 - +1.9 575,764 + +1.3 575,772 - -0.6 575,777 + +1.1 575,778 - +0.9 575,782 + +0.1 575,782 + -1.1 575,782 + -0.4 575,782 + +0.6 575,783 - -1.2 575,787 - -0.4 575,787 - +0.8 575,787 - -0.1 575,817 + -0.9 575,834 - -1.1 575,845 + -0.9 575,845 + -0.5 575,898 - -0.1 575,901 + -1.9 575,901 + -0.1 575,901 + +0.7 575,901 + -0.9 575,902 - +0.3 575,902 - -0.9 575,902 - -0.5 575,902 - -0.6 575,905 + +1.1 575,905 + +0.5 575,905 + +0.2 575,906 - -1.2 575,979 + -1.1 575,979 + -0.2 575,980 - +0.1 576,001 + +1.5 576,001 + -0.6 576,036 + -0.2 576,036 + -0.9 576,036 + +1.3 576,037 - -0.1 576,037 - -0.6 576,037 - +0.7 576,037 - -0.1 576,104 + +0.3 576,104 + -1.2 576,104 + +0.7 576,104 + -1.4 576,105 - +0.3 576,105 - +2.2 576,175 - -1.6 576,192 + -0.5 576,193 - -0.7 576,195 - -0.4 576,195 - -0.1 576,253 - +0.3 576,253 - +0.5 576,266 + +0.5 576,323 - +0.9 576,323 - +0.5 576,324 + +0.4 576,325 - +0.5 576,325 - +0.3 576,325 - +1.5 576,407 - +0.9 576,409 - HGI48_RS02655 0.28 -0.9 576,430 + HGI48_RS02655 0.36 -0.1 576,476 + HGI48_RS02655 0.53 -0.8 576,476 + +2.3 576,476 + HGI48_RS02655 0.53 +0.6 576,476 + HGI48_RS02655 0.53 -0.6 576,477 - HGI48_RS02655 0.53 -0.1 576,477 - HGI48_RS02655 0.53 -1.1 576,477 - HGI48_RS02655 0.53 -0.1 576,478 + HGI48_RS02655 0.54 -0.1
Or see this region's nucleotide sequence