Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02465 and HGI48_RS02470 are separated by 175 nucleotides HGI48_RS02470 and HGI48_RS02475 are separated by 230 nucleotides HGI48_RS02475 and HGI48_RS02480 overlap by 16 nucleotides
HGI48_RS02465: HGI48_RS02465 - alkyl hydroperoxide reductase subunit F, at 533,004 to 534,566
_RS02465
HGI48_RS02470: HGI48_RS02470 - DUF1868 domain-containing protein, at 534,742 to 535,572
_RS02470
HGI48_RS02475: HGI48_RS02475 - acetyltransferase, at 535,803 to 536,483
_RS02475
HGI48_RS02480: HGI48_RS02480 - hydroxyisourate hydrolase, at 536,468 to 536,800
_RS02480
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 533.775 kb on + strand, within HGI48_RS02465 at 533.775 kb on + strand, within HGI48_RS02465 at 533.776 kb on - strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.842 kb on - strand, within HGI48_RS02465 at 533.987 kb on + strand at 534.033 kb on + strand, within HGI48_RS02465 at 534.033 kb on + strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.068 kb on + strand, within HGI48_RS02465 at 534.069 kb on - strand, within HGI48_RS02465 at 534.289 kb on - strand, within HGI48_RS02465 at 534.289 kb on - strand, within HGI48_RS02465 at 534.290 kb on + strand, within HGI48_RS02465 at 534.290 kb on + strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.318 kb on - strand, within HGI48_RS02465 at 534.318 kb on - strand, within HGI48_RS02465 at 534.318 kb on - strand, within HGI48_RS02465 at 534.390 kb on - strand, within HGI48_RS02465 at 534.451 kb on + strand at 534.452 kb on - strand at 534.452 kb on - strand at 534.452 kb on - strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.484 kb on - strand at 534.484 kb on - strand at 534.530 kb on - strand at 534.543 kb on + strand at 534.544 kb on - strand at 534.544 kb on - strand at 534.544 kb on - strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.586 kb on + strand at 534.586 kb on + strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.659 kb on + strand at 534.660 kb on - strand at 534.899 kb on + strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.939 kb on - strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.963 kb on - strand, within HGI48_RS02470 at 534.966 kb on + strand at 534.967 kb on - strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand at 535.181 kb on - strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand at 535.220 kb on - strand, within HGI48_RS02470 at 535.266 kb on - strand, within HGI48_RS02470 at 535.336 kb on - strand, within HGI48_RS02470 at 535.336 kb on - strand, within HGI48_RS02470 at 535.377 kb on + strand, within HGI48_RS02470 at 535.377 kb on + strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.523 kb on + strand at 535.523 kb on + strand at 535.562 kb on - strand at 535.590 kb on + strand at 535.590 kb on + strand at 535.590 kb on + strand at 535.591 kb on - strand at 535.591 kb on - strand at 535.591 kb on - strand at 535.597 kb on + strand at 535.597 kb on + strand at 535.598 kb on - strand at 535.598 kb on - strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.600 kb on + strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.601 kb on - strand at 535.608 kb on + strand at 535.608 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.617 kb on + strand at 535.618 kb on - strand at 535.618 kb on - strand at 535.618 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.625 kb on - strand at 535.629 kb on - strand at 535.641 kb on + strand at 535.642 kb on - strand at 535.646 kb on + strand at 535.667 kb on + strand at 535.692 kb on + strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.693 kb on - strand at 535.703 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.802 kb on + strand at 535.802 kb on + strand at 535.861 kb on + strand at 535.861 kb on + strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.862 kb on - strand at 535.874 kb on + strand, within HGI48_RS02475 at 535.910 kb on + strand, within HGI48_RS02475 at 535.910 kb on + strand, within HGI48_RS02475 at 535.911 kb on - strand, within HGI48_RS02475 at 535.911 kb on - strand, within HGI48_RS02475 at 535.941 kb on + strand, within HGI48_RS02475 at 535.941 kb on + strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.942 kb on - strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.947 kb on + strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 535.948 kb on - strand, within HGI48_RS02475 at 536.085 kb on + strand, within HGI48_RS02475 at 536.085 kb on + strand, within HGI48_RS02475 at 536.086 kb on - strand, within HGI48_RS02475 at 536.430 kb on + strand at 536.430 kb on + strand at 536.430 kb on + strand at 536.431 kb on - strand at 536.486 kb on - strand at 536.486 kb on - strand at 536.523 kb on + strand, within HGI48_RS02480 at 536.523 kb on + strand, within HGI48_RS02480 at 536.524 kb on - strand at 536.568 kb on + strand, within HGI48_RS02480 at 536.568 kb on + strand, within HGI48_RS02480 at 536.569 kb on - strand, within HGI48_RS02480 at 536.569 kb on - strand, within HGI48_RS02480
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 533,775 + HGI48_RS02465 0.49 +0.6 533,775 + HGI48_RS02465 0.49 +1.2 533,776 - HGI48_RS02465 0.49 -1.4 533,841 + HGI48_RS02465 0.54 +0.4 533,841 + HGI48_RS02465 0.54 -0.0 533,841 + HGI48_RS02465 0.54 -0.6 533,842 - HGI48_RS02465 0.54 +1.6 533,987 + +1.0 534,033 + HGI48_RS02465 0.66 -1.7 534,033 + HGI48_RS02465 0.66 +0.2 534,034 - HGI48_RS02465 0.66 +0.7 534,034 - HGI48_RS02465 0.66 -1.3 534,034 - HGI48_RS02465 0.66 -1.0 534,034 - HGI48_RS02465 0.66 +0.1 534,068 + HGI48_RS02465 0.68 -1.0 534,069 - HGI48_RS02465 0.68 -0.3 534,289 - HGI48_RS02465 0.82 +0.4 534,289 - HGI48_RS02465 0.82 -1.9 534,290 + HGI48_RS02465 0.82 -0.4 534,290 + HGI48_RS02465 0.82 -1.6 534,291 - HGI48_RS02465 0.82 -1.4 534,291 - HGI48_RS02465 0.82 +0.0 534,291 - HGI48_RS02465 0.82 -0.6 534,291 - HGI48_RS02465 0.82 +0.2 534,291 - HGI48_RS02465 0.82 -0.0 534,291 - HGI48_RS02465 0.82 +0.7 534,317 + HGI48_RS02465 0.84 +0.6 534,317 + HGI48_RS02465 0.84 -0.4 534,317 + HGI48_RS02465 0.84 +1.0 534,317 + HGI48_RS02465 0.84 +0.9 534,318 - HGI48_RS02465 0.84 +0.1 534,318 - HGI48_RS02465 0.84 +0.1 534,318 - HGI48_RS02465 0.84 +0.6 534,390 - HGI48_RS02465 0.89 -0.0 534,451 + +0.1 534,452 - -0.6 534,452 - -1.4 534,452 - +0.1 534,483 + -0.4 534,483 + +0.4 534,483 + +0.7 534,483 + -0.4 534,483 + -0.0 534,484 - -0.4 534,484 - -1.0 534,530 - -0.2 534,543 + +0.6 534,544 - +0.7 534,544 - +1.7 534,544 - +0.2 534,547 + -1.4 534,547 + +0.4 534,547 + +0.1 534,547 + -0.0 534,547 + +0.7 534,548 - -1.6 534,548 - -1.6 534,548 - +0.3 534,548 - -0.2 534,548 - +0.1 534,586 + -1.5 534,586 + -0.1 534,587 - -1.0 534,587 - +1.7 534,587 - +2.2 534,587 - +0.2 534,587 - +1.0 534,633 + -0.1 534,633 + -0.8 534,633 + -1.2 534,633 + +1.0 534,633 + +2.1 534,634 - -1.2 534,634 - -0.4 534,634 - +3.8 534,634 - -1.2 534,634 - -0.0 534,635 + -2.0 534,635 + -1.9 534,635 + -0.0 534,635 + +2.3 534,635 + -0.6 534,635 + +0.2 534,635 + -1.6 534,635 + -0.3 534,635 + -0.0 534,636 - +0.7 534,636 - +1.0 534,636 - +0.3 534,636 - +0.1 534,636 - +1.0 534,636 - -0.1 534,636 - -0.4 534,636 - -1.1 534,636 - -0.5 534,636 - -0.9 534,636 - -1.2 534,636 - -0.6 534,636 - +0.4 534,636 - +1.0 534,636 - -1.0 534,659 + -0.6 534,660 - +0.6 534,899 + HGI48_RS02470 0.19 +0.6 534,900 - HGI48_RS02470 0.19 +0.1 534,900 - HGI48_RS02470 0.19 -0.4 534,900 - HGI48_RS02470 0.19 -0.3 534,939 - HGI48_RS02470 0.24 +0.4 534,962 + HGI48_RS02470 0.26 -0.9 534,962 + HGI48_RS02470 0.26 -1.2 534,962 + HGI48_RS02470 0.26 +0.8 534,962 + HGI48_RS02470 0.26 +1.4 534,962 + HGI48_RS02470 0.26 -0.9 534,962 + HGI48_RS02470 0.26 -0.9 534,962 + HGI48_RS02470 0.26 +1.3 534,962 + HGI48_RS02470 0.26 -0.2 534,963 - HGI48_RS02470 0.27 -0.6 534,966 + -0.6 534,967 - HGI48_RS02470 0.27 -0.3 535,180 + HGI48_RS02470 0.53 +0.0 535,180 + HGI48_RS02470 0.53 -0.4 535,180 + HGI48_RS02470 0.53 +1.0 535,181 - HGI48_RS02470 0.53 +0.6 535,181 - HGI48_RS02470 0.53 +1.8 535,181 - HGI48_RS02470 0.53 +0.3 535,181 - HGI48_RS02470 0.53 -0.0 535,181 - +2.4 535,181 - HGI48_RS02470 0.53 -0.9 535,182 + HGI48_RS02470 0.53 -0.6 535,182 + HGI48_RS02470 0.53 -0.9 535,182 + HGI48_RS02470 0.53 +0.0 535,182 + +0.4 535,220 - HGI48_RS02470 0.58 +0.8 535,266 - HGI48_RS02470 0.63 +0.6 535,336 - HGI48_RS02470 0.71 +0.4 535,336 - HGI48_RS02470 0.71 +1.6 535,377 + HGI48_RS02470 0.76 -1.6 535,377 + HGI48_RS02470 0.76 +0.7 535,378 - HGI48_RS02470 0.77 +0.4 535,378 - HGI48_RS02470 0.77 -0.3 535,378 - +0.4 535,378 - HGI48_RS02470 0.77 -0.0 535,378 - HGI48_RS02470 0.77 -0.1 535,378 - HGI48_RS02470 0.77 -0.5 535,378 - HGI48_RS02470 0.77 +1.3 535,378 - HGI48_RS02470 0.77 -1.4 535,518 + -2.7 535,518 + +1.0 535,518 + +0.6 535,518 + +1.0 535,519 - +0.1 535,519 - +0.4 535,519 - -0.9 535,523 + -1.5 535,523 + -0.9 535,562 - -0.3 535,590 + -0.5 535,590 + -0.9 535,590 + -0.0 535,591 - -0.4 535,591 - +1.0 535,591 - -0.2 535,597 + +0.0 535,597 + -1.0 535,598 - +0.8 535,598 - -0.0 535,600 + -0.1 535,600 + -0.4 535,600 + -0.9 535,600 + +0.1 535,600 + -0.0 535,600 + +0.4 535,600 + +0.1 535,600 + -0.4 535,601 - +1.1 535,601 - +0.7 535,601 - -0.6 535,601 - -1.0 535,601 - -1.0 535,608 + +1.3 535,608 + +0.5 535,617 + +1.0 535,617 + -2.9 535,617 + +0.1 535,617 + +1.4 535,617 + -1.0 535,618 - -1.6 535,618 - +1.2 535,618 - -0.0 535,625 - -0.4 535,625 - -0.6 535,625 - +0.4 535,625 - -0.3 535,629 - +0.2 535,641 + +2.0 535,642 - +0.2 535,646 + -1.0 535,667 + +0.8 535,692 + -0.4 535,693 - -0.0 535,693 - -0.7 535,693 - +0.4 535,693 - -0.3 535,693 - -0.4 535,703 + -0.3 535,758 + +0.1 535,758 + +0.4 535,758 + +0.8 535,759 - -0.2 535,759 - -1.3 535,759 - +1.1 535,759 - +0.6 535,802 + -0.4 535,802 + +0.7 535,861 + +2.0 535,861 + +1.4 535,862 - -0.2 535,862 - -0.0 535,862 - -1.5 535,862 - -0.6 535,862 - -0.3 535,862 - -1.5 535,862 - -2.2 535,874 + HGI48_RS02475 0.10 +1.5 535,910 + HGI48_RS02475 0.16 -1.9 535,910 + HGI48_RS02475 0.16 -1.2 535,911 - HGI48_RS02475 0.16 +0.1 535,911 - HGI48_RS02475 0.16 -0.5 535,941 + HGI48_RS02475 0.20 +0.4 535,941 + HGI48_RS02475 0.20 +0.7 535,942 - HGI48_RS02475 0.20 +1.2 535,942 - HGI48_RS02475 0.20 -0.4 535,942 - HGI48_RS02475 0.20 +0.7 535,942 - HGI48_RS02475 0.20 +0.6 535,942 - HGI48_RS02475 0.20 +0.7 535,947 + HGI48_RS02475 0.21 -0.9 535,947 + HGI48_RS02475 0.21 -1.5 535,947 + HGI48_RS02475 0.21 -1.4 535,947 + +1.0 535,947 + HGI48_RS02475 0.21 +0.5 535,947 + HGI48_RS02475 0.21 +0.2 535,947 + HGI48_RS02475 0.21 +0.1 535,947 + HGI48_RS02475 0.21 +0.0 535,947 + HGI48_RS02475 0.21 +0.0 535,947 + HGI48_RS02475 0.21 -1.6 535,948 - HGI48_RS02475 0.21 -0.6 535,948 - HGI48_RS02475 0.21 -0.9 535,948 - HGI48_RS02475 0.21 -0.6 535,948 - HGI48_RS02475 0.21 +0.5 535,948 - HGI48_RS02475 0.21 -1.0 535,948 - HGI48_RS02475 0.21 +1.2 536,085 + HGI48_RS02475 0.41 +1.0 536,085 + HGI48_RS02475 0.41 +1.0 536,086 - HGI48_RS02475 0.42 -0.1 536,430 + +0.4 536,430 + -0.9 536,430 + -0.4 536,431 - +1.0 536,486 - -0.6 536,486 - -1.2 536,523 + HGI48_RS02480 0.17 -0.6 536,523 + HGI48_RS02480 0.17 +0.1 536,524 - -0.6 536,568 + HGI48_RS02480 0.30 -0.7 536,568 + HGI48_RS02480 0.30 -0.3 536,569 - HGI48_RS02480 0.30 -0.4 536,569 - HGI48_RS02480 0.30 -0.4
Or see this region's nucleotide sequence