Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02455 and HGI48_RS02460 are separated by 104 nucleotides HGI48_RS02460 and HGI48_RS02465 are separated by 73 nucleotides HGI48_RS02465 and HGI48_RS02470 are separated by 175 nucleotides
HGI48_RS02455: HGI48_RS02455 - iron ABC transporter permease, at 531,264 to 532,262
_RS02455
HGI48_RS02460: HGI48_RS02460 - alkyl hydroperoxide reductase subunit C, at 532,367 to 532,930
_RS02460
HGI48_RS02465: HGI48_RS02465 - alkyl hydroperoxide reductase subunit F, at 533,004 to 534,566
_RS02465
HGI48_RS02470: HGI48_RS02470 - DUF1868 domain-containing protein, at 534,742 to 535,572
_RS02470
Position (kb) 533
534
535 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 532.260 kb on + strand at 532.260 kb on + strand at 532.271 kb on + strand at 532.324 kb on + strand at 532.324 kb on + strand at 532.324 kb on + strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.346 kb on - strand at 532.346 kb on - strand at 532.346 kb on - strand at 532.352 kb on + strand at 532.352 kb on + strand at 532.352 kb on + strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.381 kb on + strand at 532.381 kb on + strand at 532.382 kb on - strand at 532.382 kb on - strand at 532.382 kb on - strand at 532.384 kb on + strand at 532.385 kb on - strand at 532.482 kb on - strand, within HGI48_RS02460 at 532.496 kb on - strand, within HGI48_RS02460 at 532.538 kb on + strand, within HGI48_RS02460 at 532.538 kb on + strand, within HGI48_RS02460 at 532.539 kb on - strand, within HGI48_RS02460 at 532.563 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.572 kb on - strand at 532.572 kb on - strand, within HGI48_RS02460 at 532.572 kb on - strand, within HGI48_RS02460 at 532.597 kb on + strand, within HGI48_RS02460 at 532.598 kb on - strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.835 kb on + strand, within HGI48_RS02460 at 532.928 kb on + strand at 532.998 kb on + strand at 532.998 kb on + strand at 533.003 kb on + strand at 533.003 kb on + strand at 533.004 kb on - strand at 533.015 kb on + strand at 533.040 kb on + strand at 533.176 kb on + strand, within HGI48_RS02465 at 533.264 kb on + strand, within HGI48_RS02465 at 533.326 kb on + strand, within HGI48_RS02465 at 533.327 kb on - strand, within HGI48_RS02465 at 533.373 kb on + strand, within HGI48_RS02465 at 533.373 kb on + strand, within HGI48_RS02465 at 533.373 kb on + strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.376 kb on + strand, within HGI48_RS02465 at 533.376 kb on + strand at 533.377 kb on - strand, within HGI48_RS02465 at 533.425 kb on + strand, within HGI48_RS02465 at 533.426 kb on - strand, within HGI48_RS02465 at 533.426 kb on - strand, within HGI48_RS02465 at 533.504 kb on + strand, within HGI48_RS02465 at 533.524 kb on + strand, within HGI48_RS02465 at 533.525 kb on - strand, within HGI48_RS02465 at 533.525 kb on - strand, within HGI48_RS02465 at 533.588 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.691 kb on + strand, within HGI48_RS02465 at 533.691 kb on + strand, within HGI48_RS02465 at 533.775 kb on + strand, within HGI48_RS02465 at 533.775 kb on + strand, within HGI48_RS02465 at 533.776 kb on - strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.842 kb on - strand, within HGI48_RS02465 at 533.987 kb on + strand at 534.033 kb on + strand, within HGI48_RS02465 at 534.033 kb on + strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.068 kb on + strand, within HGI48_RS02465 at 534.069 kb on - strand, within HGI48_RS02465 at 534.289 kb on - strand, within HGI48_RS02465 at 534.289 kb on - strand, within HGI48_RS02465 at 534.290 kb on + strand, within HGI48_RS02465 at 534.290 kb on + strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.318 kb on - strand, within HGI48_RS02465 at 534.318 kb on - strand, within HGI48_RS02465 at 534.318 kb on - strand, within HGI48_RS02465 at 534.390 kb on - strand, within HGI48_RS02465 at 534.451 kb on + strand at 534.452 kb on - strand at 534.452 kb on - strand at 534.452 kb on - strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.484 kb on - strand at 534.484 kb on - strand at 534.530 kb on - strand at 534.543 kb on + strand at 534.544 kb on - strand at 534.544 kb on - strand at 534.544 kb on - strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.586 kb on + strand at 534.586 kb on + strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.659 kb on + strand at 534.660 kb on - strand at 534.899 kb on + strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.939 kb on - strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.963 kb on - strand, within HGI48_RS02470 at 534.966 kb on + strand at 534.967 kb on - strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand at 535.181 kb on - strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand at 535.220 kb on - strand, within HGI48_RS02470 at 535.266 kb on - strand, within HGI48_RS02470 at 535.336 kb on - strand, within HGI48_RS02470 at 535.336 kb on - strand, within HGI48_RS02470 at 535.377 kb on + strand, within HGI48_RS02470 at 535.377 kb on + strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.523 kb on + strand at 535.523 kb on + strand at 535.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 532,260 + -1.6 532,260 + +0.4 532,271 + -0.4 532,324 + -0.5 532,324 + -0.0 532,324 + +0.1 532,325 - -1.4 532,325 - -0.1 532,325 - -1.6 532,325 - -0.7 532,325 - -0.7 532,325 - -0.6 532,345 + -0.0 532,345 + +0.1 532,345 + -0.3 532,345 + -0.6 532,346 - -0.3 532,346 - -0.5 532,346 - -0.0 532,352 + -1.0 532,352 + -0.0 532,352 + -1.8 532,353 - +1.8 532,353 - -0.3 532,353 - +2.2 532,353 - -1.6 532,381 + -1.7 532,381 + -0.4 532,382 - -1.2 532,382 - -0.0 532,382 - +0.4 532,384 + +0.4 532,385 - -0.5 532,482 - HGI48_RS02460 0.20 +0.6 532,496 - HGI48_RS02460 0.23 -1.2 532,538 + HGI48_RS02460 0.30 +1.3 532,538 + HGI48_RS02460 0.30 +0.6 532,539 - HGI48_RS02460 0.30 -0.3 532,563 + HGI48_RS02460 0.35 +1.0 532,571 + HGI48_RS02460 0.36 -1.9 532,571 + HGI48_RS02460 0.36 +0.5 532,571 + HGI48_RS02460 0.36 +0.3 532,572 - +1.0 532,572 - HGI48_RS02460 0.36 +0.2 532,572 - HGI48_RS02460 0.36 +0.5 532,597 + HGI48_RS02460 0.41 +1.3 532,598 - HGI48_RS02460 0.41 -0.1 532,646 + HGI48_RS02460 0.49 -1.4 532,646 + HGI48_RS02460 0.49 +1.0 532,646 + HGI48_RS02460 0.49 -0.3 532,647 - HGI48_RS02460 0.50 -0.2 532,647 - HGI48_RS02460 0.50 +0.2 532,647 - HGI48_RS02460 0.50 -1.9 532,647 - HGI48_RS02460 0.50 +1.5 532,647 - HGI48_RS02460 0.50 +0.5 532,647 - HGI48_RS02460 0.50 +1.7 532,835 + HGI48_RS02460 0.83 -2.0 532,928 + +0.3 532,998 + +0.5 532,998 + -0.0 533,003 + -1.5 533,003 + -0.5 533,004 - -0.2 533,015 + +1.0 533,040 + -0.4 533,176 + HGI48_RS02465 0.11 -1.5 533,264 + HGI48_RS02465 0.17 -0.3 533,326 + HGI48_RS02465 0.21 -0.4 533,327 - HGI48_RS02465 0.21 +0.7 533,373 + HGI48_RS02465 0.24 +1.0 533,373 + HGI48_RS02465 0.24 +0.1 533,373 + HGI48_RS02465 0.24 -1.2 533,374 - HGI48_RS02465 0.24 +0.2 533,374 - HGI48_RS02465 0.24 +0.7 533,374 - HGI48_RS02465 0.24 +2.0 533,374 - HGI48_RS02465 0.24 +1.7 533,376 + HGI48_RS02465 0.24 -1.4 533,376 + +0.4 533,377 - HGI48_RS02465 0.24 +0.2 533,425 + HGI48_RS02465 0.27 -1.4 533,426 - HGI48_RS02465 0.27 -2.4 533,426 - HGI48_RS02465 0.27 +0.3 533,504 + HGI48_RS02465 0.32 +1.5 533,524 + HGI48_RS02465 0.33 -0.6 533,525 - HGI48_RS02465 0.33 -2.0 533,525 - HGI48_RS02465 0.33 +1.2 533,588 - HGI48_RS02465 0.37 -1.0 533,641 - HGI48_RS02465 0.41 +0.3 533,641 - HGI48_RS02465 0.41 -1.0 533,641 - HGI48_RS02465 0.41 -0.6 533,641 - HGI48_RS02465 0.41 +0.8 533,641 - HGI48_RS02465 0.41 -0.5 533,641 - HGI48_RS02465 0.41 +0.1 533,691 + HGI48_RS02465 0.44 -0.1 533,691 + HGI48_RS02465 0.44 -0.0 533,775 + HGI48_RS02465 0.49 +0.6 533,775 + HGI48_RS02465 0.49 +1.2 533,776 - HGI48_RS02465 0.49 -1.4 533,841 + HGI48_RS02465 0.54 +0.4 533,841 + HGI48_RS02465 0.54 -0.0 533,841 + HGI48_RS02465 0.54 -0.6 533,842 - HGI48_RS02465 0.54 +1.6 533,987 + +1.0 534,033 + HGI48_RS02465 0.66 -1.7 534,033 + HGI48_RS02465 0.66 +0.2 534,034 - HGI48_RS02465 0.66 +0.7 534,034 - HGI48_RS02465 0.66 -1.3 534,034 - HGI48_RS02465 0.66 -1.0 534,034 - HGI48_RS02465 0.66 +0.1 534,068 + HGI48_RS02465 0.68 -1.0 534,069 - HGI48_RS02465 0.68 -0.3 534,289 - HGI48_RS02465 0.82 +0.4 534,289 - HGI48_RS02465 0.82 -1.9 534,290 + HGI48_RS02465 0.82 -0.4 534,290 + HGI48_RS02465 0.82 -1.6 534,291 - HGI48_RS02465 0.82 -1.4 534,291 - HGI48_RS02465 0.82 +0.0 534,291 - HGI48_RS02465 0.82 -0.6 534,291 - HGI48_RS02465 0.82 +0.2 534,291 - HGI48_RS02465 0.82 -0.0 534,291 - HGI48_RS02465 0.82 +0.7 534,317 + HGI48_RS02465 0.84 +0.6 534,317 + HGI48_RS02465 0.84 -0.4 534,317 + HGI48_RS02465 0.84 +1.0 534,317 + HGI48_RS02465 0.84 +0.9 534,318 - HGI48_RS02465 0.84 +0.1 534,318 - HGI48_RS02465 0.84 +0.1 534,318 - HGI48_RS02465 0.84 +0.6 534,390 - HGI48_RS02465 0.89 -0.0 534,451 + +0.1 534,452 - -0.6 534,452 - -1.4 534,452 - +0.1 534,483 + -0.4 534,483 + +0.4 534,483 + +0.7 534,483 + -0.4 534,483 + -0.0 534,484 - -0.4 534,484 - -1.0 534,530 - -0.2 534,543 + +0.6 534,544 - +0.7 534,544 - +1.7 534,544 - +0.2 534,547 + -1.4 534,547 + +0.4 534,547 + +0.1 534,547 + -0.0 534,547 + +0.7 534,548 - -1.6 534,548 - -1.6 534,548 - +0.3 534,548 - -0.2 534,548 - +0.1 534,586 + -1.5 534,586 + -0.1 534,587 - -1.0 534,587 - +1.7 534,587 - +2.2 534,587 - +0.2 534,587 - +1.0 534,633 + -0.1 534,633 + -0.8 534,633 + -1.2 534,633 + +1.0 534,633 + +2.1 534,634 - -1.2 534,634 - -0.4 534,634 - +3.8 534,634 - -1.2 534,634 - -0.0 534,635 + -2.0 534,635 + -1.9 534,635 + -0.0 534,635 + +2.3 534,635 + -0.6 534,635 + +0.2 534,635 + -1.6 534,635 + -0.3 534,635 + -0.0 534,636 - +0.7 534,636 - +1.0 534,636 - +0.3 534,636 - +0.1 534,636 - +1.0 534,636 - -0.1 534,636 - -0.4 534,636 - -1.1 534,636 - -0.5 534,636 - -0.9 534,636 - -1.2 534,636 - -0.6 534,636 - +0.4 534,636 - +1.0 534,636 - -1.0 534,659 + -0.6 534,660 - +0.6 534,899 + HGI48_RS02470 0.19 +0.6 534,900 - HGI48_RS02470 0.19 +0.1 534,900 - HGI48_RS02470 0.19 -0.4 534,900 - HGI48_RS02470 0.19 -0.3 534,939 - HGI48_RS02470 0.24 +0.4 534,962 + HGI48_RS02470 0.26 -0.9 534,962 + HGI48_RS02470 0.26 -1.2 534,962 + HGI48_RS02470 0.26 +0.8 534,962 + HGI48_RS02470 0.26 +1.4 534,962 + HGI48_RS02470 0.26 -0.9 534,962 + HGI48_RS02470 0.26 -0.9 534,962 + HGI48_RS02470 0.26 +1.3 534,962 + HGI48_RS02470 0.26 -0.2 534,963 - HGI48_RS02470 0.27 -0.6 534,966 + -0.6 534,967 - HGI48_RS02470 0.27 -0.3 535,180 + HGI48_RS02470 0.53 +0.0 535,180 + HGI48_RS02470 0.53 -0.4 535,180 + HGI48_RS02470 0.53 +1.0 535,181 - HGI48_RS02470 0.53 +0.6 535,181 - HGI48_RS02470 0.53 +1.8 535,181 - HGI48_RS02470 0.53 +0.3 535,181 - HGI48_RS02470 0.53 -0.0 535,181 - +2.4 535,181 - HGI48_RS02470 0.53 -0.9 535,182 + HGI48_RS02470 0.53 -0.6 535,182 + HGI48_RS02470 0.53 -0.9 535,182 + HGI48_RS02470 0.53 +0.0 535,182 + +0.4 535,220 - HGI48_RS02470 0.58 +0.8 535,266 - HGI48_RS02470 0.63 +0.6 535,336 - HGI48_RS02470 0.71 +0.4 535,336 - HGI48_RS02470 0.71 +1.6 535,377 + HGI48_RS02470 0.76 -1.6 535,377 + HGI48_RS02470 0.76 +0.7 535,378 - HGI48_RS02470 0.77 +0.4 535,378 - HGI48_RS02470 0.77 -0.3 535,378 - +0.4 535,378 - HGI48_RS02470 0.77 -0.0 535,378 - HGI48_RS02470 0.77 -0.1 535,378 - HGI48_RS02470 0.77 -0.5 535,378 - HGI48_RS02470 0.77 +1.3 535,378 - HGI48_RS02470 0.77 -1.4 535,518 + -2.7 535,518 + +1.0 535,518 + +0.6 535,518 + +1.0 535,519 - +0.1 535,519 - +0.4 535,519 - -0.9 535,523 + -1.5 535,523 + -0.9 535,562 - -0.3
Or see this region's nucleotide sequence