Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02340

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS02335 and HGI48_RS02340 are separated by 494 nucleotidesHGI48_RS02340 and HGI48_RS02345 are separated by 21 nucleotides HGI48_RS02335: HGI48_RS02335 - DUF1440 domain-containing protein, at 507,275 to 507,817 _RS02335 HGI48_RS02340: HGI48_RS02340 - FAD-dependent 2-octaprenylphenol hydroxylase, at 508,312 to 509,523 _RS02340 HGI48_RS02345: HGI48_RS02345 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 509,545 to 510,723 _RS02345 Position (kb) 508 509 510Strain fitness (log2 ratio) -2 -1 0 1 2at 507.322 kb on + strandat 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.376 kb on + strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.377 kb on - strand, within HGI48_RS02335at 507.544 kb on - strand, within HGI48_RS02335at 507.544 kb on - strandat 507.553 kb on + strand, within HGI48_RS02335at 507.554 kb on - strand, within HGI48_RS02335at 507.559 kb on + strand, within HGI48_RS02335at 507.621 kb on + strand, within HGI48_RS02335at 507.621 kb on + strand, within HGI48_RS02335at 507.622 kb on - strandat 507.622 kb on - strand, within HGI48_RS02335at 507.665 kb on + strand, within HGI48_RS02335at 507.666 kb on - strand, within HGI48_RS02335at 507.666 kb on - strand, within HGI48_RS02335at 507.865 kb on - strandat 507.952 kb on + strandat 508.019 kb on + strandat 508.102 kb on - strandat 509.524 kb on - strandat 509.524 kb on - strandat 509.524 kb on - strandat 509.581 kb on + strandat 509.581 kb on + strandat 509.582 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
507,322 + +2.0
507,376 + HGI48_RS02335 0.19 -0.4
507,376 + HGI48_RS02335 0.19 +0.3
507,376 + HGI48_RS02335 0.19 +1.2
507,376 + HGI48_RS02335 0.19 -0.7
507,376 + HGI48_RS02335 0.19 -2.2
507,376 + HGI48_RS02335 0.19 -1.6
507,377 - HGI48_RS02335 0.19 -0.6
507,377 - HGI48_RS02335 0.19 -0.0
507,377 - HGI48_RS02335 0.19 -1.6
507,377 - HGI48_RS02335 0.19 -0.0
507,377 - HGI48_RS02335 0.19 +0.9
507,377 - HGI48_RS02335 0.19 -0.0
507,377 - HGI48_RS02335 0.19 +1.8
507,377 - HGI48_RS02335 0.19 -0.4
507,377 - HGI48_RS02335 0.19 -0.6
507,377 - HGI48_RS02335 0.19 -1.0
507,377 - HGI48_RS02335 0.19 +0.9
507,377 - HGI48_RS02335 0.19 +1.2
507,544 - HGI48_RS02335 0.50 -1.7
507,544 - -0.0
507,553 + HGI48_RS02335 0.51 +0.5
507,554 - HGI48_RS02335 0.51 -0.4
507,559 + HGI48_RS02335 0.52 +0.3
507,621 + HGI48_RS02335 0.64 -0.3
507,621 + HGI48_RS02335 0.64 -0.2
507,622 - -0.6
507,622 - HGI48_RS02335 0.64 -1.0
507,665 + HGI48_RS02335 0.72 -0.7
507,666 - HGI48_RS02335 0.72 -0.6
507,666 - HGI48_RS02335 0.72 +0.1
507,865 - +1.0
507,952 + +0.3
508,019 + +1.0
508,102 - -0.2
509,524 - -0.9
509,524 - -0.0
509,524 - +0.4
509,581 + +1.4
509,581 + -0.4
509,582 - +1.0

Or see this region's nucleotide sequence