Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02035 and HGI48_RS02040 are separated by 286 nucleotides HGI48_RS02040 and HGI48_RS02045 overlap by 10 nucleotides HGI48_RS02045 and HGI48_RS02050 are separated by 448 nucleotides
HGI48_RS02035: HGI48_RS02035 - ATP-binding protein, at 447,320 to 449,041
_RS02035
HGI48_RS02040: HGI48_RS02040 - GNAT family N-acetyltransferase, at 449,328 to 449,807
_RS02040
HGI48_RS02045: HGI48_RS02045 - DUF1778 domain-containing protein, at 449,798 to 450,070
_RS02045
HGI48_RS02050: HGI48_RS02050 - integrase family protein, at 450,519 to 451,219
_RS02050
Position (kb) 449
450 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 448.579 kb on - strand, within HGI48_RS02035 at 448.604 kb on - strand at 448.604 kb on - strand, within HGI48_RS02035 at 448.669 kb on + strand at 448.670 kb on - strand, within HGI48_RS02035 at 448.753 kb on + strand, within HGI48_RS02035 at 448.753 kb on + strand, within HGI48_RS02035 at 448.754 kb on - strand, within HGI48_RS02035 at 448.755 kb on + strand, within HGI48_RS02035 at 448.755 kb on + strand, within HGI48_RS02035 at 448.755 kb on + strand, within HGI48_RS02035 at 448.756 kb on - strand, within HGI48_RS02035 at 448.756 kb on - strand, within HGI48_RS02035 at 448.762 kb on + strand, within HGI48_RS02035 at 448.783 kb on + strand, within HGI48_RS02035 at 448.837 kb on + strand, within HGI48_RS02035 at 448.849 kb on + strand, within HGI48_RS02035 at 448.960 kb on + strand at 448.961 kb on - strand at 449.051 kb on + strand at 449.089 kb on - strand at 449.100 kb on - strand at 449.131 kb on + strand at 449.225 kb on - strand at 449.314 kb on - strand at 449.314 kb on - strand at 449.329 kb on + strand at 449.330 kb on - strand at 449.343 kb on + strand at 449.343 kb on + strand at 449.344 kb on - strand at 449.387 kb on - strand, within HGI48_RS02040 at 449.415 kb on + strand, within HGI48_RS02040 at 449.475 kb on + strand, within HGI48_RS02040 at 449.510 kb on + strand, within HGI48_RS02040 at 449.510 kb on + strand, within HGI48_RS02040 at 449.547 kb on + strand, within HGI48_RS02040 at 449.547 kb on + strand, within HGI48_RS02040 at 449.573 kb on + strand, within HGI48_RS02040 at 449.573 kb on + strand, within HGI48_RS02040 at 449.633 kb on - strand, within HGI48_RS02040 at 449.633 kb on - strand, within HGI48_RS02040 at 449.784 kb on + strand at 449.784 kb on + strand at 449.784 kb on + strand at 449.785 kb on - strand at 449.886 kb on + strand, within HGI48_RS02045 at 449.886 kb on + strand, within HGI48_RS02045 at 449.886 kb on + strand, within HGI48_RS02045 at 449.886 kb on + strand, within HGI48_RS02045 at 449.886 kb on + strand, within HGI48_RS02045 at 449.887 kb on - strand at 449.887 kb on - strand, within HGI48_RS02045 at 449.887 kb on - strand, within HGI48_RS02045 at 449.887 kb on - strand, within HGI48_RS02045 at 449.887 kb on - strand, within HGI48_RS02045 at 449.887 kb on - strand, within HGI48_RS02045 at 449.887 kb on - strand, within HGI48_RS02045 at 449.887 kb on - strand, within HGI48_RS02045 at 449.887 kb on - strand, within HGI48_RS02045 at 450.028 kb on + strand, within HGI48_RS02045 at 450.029 kb on - strand, within HGI48_RS02045 at 450.037 kb on + strand at 450.037 kb on + strand, within HGI48_RS02045 at 450.041 kb on - strand, within HGI48_RS02045 at 450.097 kb on + strand at 450.098 kb on - strand at 450.099 kb on + strand at 450.099 kb on + strand at 450.099 kb on + strand at 450.100 kb on - strand at 450.110 kb on + strand at 450.110 kb on + strand at 450.111 kb on - strand at 450.220 kb on - strand at 450.225 kb on + strand at 450.232 kb on - strand at 450.246 kb on + strand at 450.518 kb on + strand at 450.518 kb on + strand at 450.545 kb on + strand at 450.551 kb on + strand at 450.552 kb on - strand at 450.570 kb on + strand at 450.571 kb on - strand at 450.571 kb on - strand at 450.623 kb on + strand, within HGI48_RS02050 at 450.685 kb on - strand, within HGI48_RS02050 at 450.685 kb on - strand, within HGI48_RS02050 at 450.741 kb on + strand at 450.741 kb on + strand, within HGI48_RS02050 at 450.741 kb on + strand, within HGI48_RS02050 at 450.741 kb on + strand, within HGI48_RS02050 at 450.742 kb on - strand at 450.743 kb on + strand, within HGI48_RS02050 at 450.743 kb on + strand, within HGI48_RS02050 at 450.743 kb on + strand, within HGI48_RS02050 at 450.743 kb on + strand, within HGI48_RS02050 at 450.743 kb on + strand, within HGI48_RS02050 at 450.744 kb on - strand, within HGI48_RS02050 at 450.744 kb on - strand, within HGI48_RS02050
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 448,579 - HGI48_RS02035 0.73 -0.6 448,604 - +0.0 448,604 - HGI48_RS02035 0.75 -1.0 448,669 + +1.6 448,670 - HGI48_RS02035 0.78 +3.0 448,753 + HGI48_RS02035 0.83 -2.2 448,753 + HGI48_RS02035 0.83 +1.7 448,754 - HGI48_RS02035 0.83 -0.6 448,755 + HGI48_RS02035 0.83 +0.0 448,755 + HGI48_RS02035 0.83 +0.0 448,755 + HGI48_RS02035 0.83 +0.3 448,756 - HGI48_RS02035 0.83 -1.1 448,756 - HGI48_RS02035 0.83 -0.6 448,762 + HGI48_RS02035 0.84 -0.4 448,783 + HGI48_RS02035 0.85 -0.6 448,837 + HGI48_RS02035 0.88 +0.3 448,849 + HGI48_RS02035 0.89 -1.0 448,960 + +0.2 448,961 - -0.6 449,051 + -1.2 449,089 - +1.2 449,100 - -0.4 449,131 + +1.2 449,225 - -0.9 449,314 - +0.6 449,314 - -0.7 449,329 + -1.0 449,330 - +2.0 449,343 + +0.4 449,343 + +1.3 449,344 - +2.2 449,387 - HGI48_RS02040 0.12 -1.8 449,415 + HGI48_RS02040 0.18 -1.3 449,475 + HGI48_RS02040 0.31 -0.5 449,510 + HGI48_RS02040 0.38 -1.1 449,510 + HGI48_RS02040 0.38 -0.3 449,547 + HGI48_RS02040 0.46 +0.0 449,547 + HGI48_RS02040 0.46 +0.0 449,573 + HGI48_RS02040 0.51 +0.7 449,573 + HGI48_RS02040 0.51 -0.6 449,633 - HGI48_RS02040 0.64 -1.6 449,633 - HGI48_RS02040 0.64 -2.7 449,784 + +0.0 449,784 + -0.2 449,784 + -0.4 449,785 - -1.3 449,886 + HGI48_RS02045 0.32 +1.0 449,886 + HGI48_RS02045 0.32 -0.2 449,886 + HGI48_RS02045 0.32 -0.5 449,886 + HGI48_RS02045 0.32 +0.5 449,886 + HGI48_RS02045 0.32 +0.0 449,887 - -0.6 449,887 - HGI48_RS02045 0.33 -0.6 449,887 - HGI48_RS02045 0.33 -1.0 449,887 - HGI48_RS02045 0.33 -1.1 449,887 - HGI48_RS02045 0.33 -2.2 449,887 - HGI48_RS02045 0.33 -1.8 449,887 - HGI48_RS02045 0.33 +1.0 449,887 - HGI48_RS02045 0.33 +1.3 449,887 - HGI48_RS02045 0.33 -0.4 450,028 + HGI48_RS02045 0.84 +0.2 450,029 - HGI48_RS02045 0.85 +0.6 450,037 + +1.6 450,037 + HGI48_RS02045 0.88 +0.8 450,041 - HGI48_RS02045 0.89 -1.6 450,097 + -2.2 450,098 - -0.8 450,099 + -1.8 450,099 + -0.3 450,099 + -0.4 450,100 - +1.3 450,110 + -0.3 450,110 + -2.0 450,111 - +1.6 450,220 - -1.3 450,225 + -1.8 450,232 - +0.0 450,246 + -0.1 450,518 + -0.5 450,518 + -0.6 450,545 + -1.0 450,551 + -0.7 450,552 - +0.0 450,570 + -0.8 450,571 - +2.0 450,571 - -1.3 450,623 + HGI48_RS02050 0.15 +1.5 450,685 - HGI48_RS02050 0.24 -0.2 450,685 - HGI48_RS02050 0.24 -1.8 450,741 + +0.0 450,741 + HGI48_RS02050 0.32 -0.6 450,741 + HGI48_RS02050 0.32 +0.3 450,741 + HGI48_RS02050 0.32 +0.0 450,742 - +1.7 450,743 + HGI48_RS02050 0.32 +1.3 450,743 + HGI48_RS02050 0.32 -1.8 450,743 + HGI48_RS02050 0.32 -1.2 450,743 + HGI48_RS02050 0.32 -1.3 450,743 + HGI48_RS02050 0.32 -0.1 450,744 - HGI48_RS02050 0.32 -1.6 450,744 - HGI48_RS02050 0.32 +0.0
Or see this region's nucleotide sequence