Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01635 and HGI48_RS01640 are separated by 420 nucleotides HGI48_RS01640 and HGI48_RS01645 overlap by 4 nucleotides HGI48_RS01645 and HGI48_RS01650 are separated by 205 nucleotides
HGI48_RS01635: HGI48_RS01635 - outer membrane channel protein TolC, at 360,345 to 361,757
_RS01635
HGI48_RS01640: HGI48_RS01640 - ADP-ribose diphosphatase, at 362,178 to 362,819
_RS01640
HGI48_RS01645: HGI48_RS01645 - DUF1249 family protein, at 362,816 to 363,241
_RS01645
HGI48_RS01650: HGI48_RS01650 - 3',5'-cyclic-AMP phosphodiesterase, at 363,447 to 364,274
_RS01650
Position (kb) 362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 361.318 kb on + strand, within HGI48_RS01635 at 361.344 kb on + strand, within HGI48_RS01635 at 361.355 kb on - strand, within HGI48_RS01635 at 361.549 kb on + strand, within HGI48_RS01635 at 361.567 kb on - strand, within HGI48_RS01635 at 361.810 kb on + strand at 361.810 kb on + strand at 361.810 kb on + strand at 361.811 kb on - strand at 361.811 kb on - strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.826 kb on - strand at 361.826 kb on - strand at 361.847 kb on + strand at 361.847 kb on + strand at 361.847 kb on + strand at 361.848 kb on - strand at 361.899 kb on + strand at 361.900 kb on - strand at 361.900 kb on - strand at 361.995 kb on - strand at 362.024 kb on - strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.163 kb on - strand at 362.177 kb on + strand at 362.177 kb on + strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.196 kb on - strand at 362.211 kb on - strand at 362.217 kb on - strand at 362.217 kb on - strand at 362.238 kb on - strand at 362.238 kb on - strand at 362.256 kb on + strand, within HGI48_RS01640 at 362.257 kb on - strand, within HGI48_RS01640 at 362.407 kb on + strand, within HGI48_RS01640 at 362.407 kb on + strand, within HGI48_RS01640 at 362.407 kb on + strand, within HGI48_RS01640 at 362.407 kb on + strand, within HGI48_RS01640 at 362.407 kb on + strand, within HGI48_RS01640 at 362.408 kb on - strand at 362.408 kb on - strand at 362.408 kb on - strand, within HGI48_RS01640 at 362.408 kb on - strand, within HGI48_RS01640 at 362.408 kb on - strand, within HGI48_RS01640 at 362.572 kb on - strand, within HGI48_RS01640 at 362.648 kb on + strand, within HGI48_RS01640 at 362.686 kb on + strand, within HGI48_RS01640 at 362.712 kb on + strand, within HGI48_RS01640 at 362.712 kb on + strand at 362.712 kb on + strand, within HGI48_RS01640 at 362.712 kb on + strand, within HGI48_RS01640 at 362.735 kb on + strand, within HGI48_RS01640 at 362.736 kb on - strand, within HGI48_RS01640 at 362.795 kb on - strand at 362.795 kb on - strand at 362.828 kb on + strand at 362.829 kb on - strand at 362.829 kb on - strand at 362.830 kb on + strand at 362.831 kb on - strand at 362.831 kb on - strand at 362.831 kb on - strand at 362.930 kb on - strand, within HGI48_RS01645 at 362.931 kb on - strand, within HGI48_RS01645 at 362.952 kb on - strand, within HGI48_RS01645 at 362.974 kb on + strand, within HGI48_RS01645 at 362.982 kb on - strand, within HGI48_RS01645 at 362.984 kb on - strand at 362.984 kb on - strand, within HGI48_RS01645 at 363.027 kb on - strand, within HGI48_RS01645 at 363.059 kb on + strand, within HGI48_RS01645 at 363.059 kb on + strand, within HGI48_RS01645 at 363.059 kb on + strand, within HGI48_RS01645 at 363.059 kb on + strand, within HGI48_RS01645 at 363.059 kb on + strand, within HGI48_RS01645 at 363.060 kb on - strand, within HGI48_RS01645 at 363.060 kb on - strand at 363.060 kb on - strand, within HGI48_RS01645 at 363.060 kb on - strand, within HGI48_RS01645 at 363.062 kb on + strand, within HGI48_RS01645 at 363.062 kb on + strand, within HGI48_RS01645 at 363.062 kb on + strand, within HGI48_RS01645 at 363.063 kb on - strand, within HGI48_RS01645 at 363.063 kb on - strand, within HGI48_RS01645 at 363.112 kb on + strand, within HGI48_RS01645 at 363.123 kb on - strand, within HGI48_RS01645 at 363.145 kb on - strand, within HGI48_RS01645 at 363.201 kb on - strand at 363.201 kb on - strand at 363.213 kb on - strand at 363.213 kb on - strand at 363.213 kb on - strand at 363.213 kb on - strand at 363.213 kb on - strand at 363.213 kb on - strand at 363.239 kb on + strand at 363.239 kb on + strand at 363.239 kb on + strand at 363.240 kb on - strand at 363.240 kb on - strand at 363.240 kb on - strand at 363.240 kb on - strand at 363.243 kb on + strand at 363.243 kb on + strand at 363.243 kb on + strand at 363.243 kb on + strand at 363.243 kb on + strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.244 kb on - strand at 363.245 kb on + strand at 363.246 kb on - strand at 363.246 kb on - strand at 363.254 kb on + strand at 363.255 kb on - strand at 363.255 kb on - strand at 363.255 kb on - strand at 363.255 kb on - strand at 363.331 kb on + strand at 363.332 kb on - strand at 363.391 kb on + strand at 363.395 kb on + strand at 363.396 kb on - strand at 363.396 kb on - strand at 363.396 kb on - strand at 363.402 kb on - strand at 363.403 kb on + strand at 363.403 kb on + strand at 363.404 kb on - strand at 363.404 kb on - strand at 363.404 kb on - strand at 363.404 kb on - strand at 363.404 kb on - strand at 363.404 kb on - strand at 363.444 kb on + strand at 363.499 kb on + strand at 363.505 kb on + strand at 363.506 kb on - strand at 363.557 kb on + strand, within HGI48_RS01650 at 363.557 kb on + strand, within HGI48_RS01650 at 363.557 kb on + strand, within HGI48_RS01650 at 363.557 kb on + strand, within HGI48_RS01650 at 363.557 kb on + strand, within HGI48_RS01650 at 363.558 kb on - strand, within HGI48_RS01650 at 363.558 kb on - strand, within HGI48_RS01650 at 363.561 kb on + strand, within HGI48_RS01650 at 363.561 kb on + strand, within HGI48_RS01650 at 363.561 kb on + strand, within HGI48_RS01650 at 363.561 kb on + strand, within HGI48_RS01650 at 363.562 kb on - strand, within HGI48_RS01650 at 363.562 kb on - strand, within HGI48_RS01650 at 363.570 kb on + strand, within HGI48_RS01650 at 363.571 kb on - strand, within HGI48_RS01650 at 363.653 kb on + strand, within HGI48_RS01650 at 363.653 kb on + strand, within HGI48_RS01650 at 363.654 kb on - strand at 363.654 kb on - strand, within HGI48_RS01650 at 363.654 kb on - strand, within HGI48_RS01650 at 363.666 kb on + strand, within HGI48_RS01650 at 363.666 kb on + strand at 363.666 kb on + strand, within HGI48_RS01650 at 363.666 kb on + strand, within HGI48_RS01650 at 363.666 kb on + strand, within HGI48_RS01650 at 363.666 kb on + strand, within HGI48_RS01650 at 363.667 kb on - strand, within HGI48_RS01650 at 363.667 kb on - strand, within HGI48_RS01650 at 363.667 kb on - strand, within HGI48_RS01650 at 363.667 kb on - strand, within HGI48_RS01650 at 363.667 kb on - strand at 363.667 kb on - strand, within HGI48_RS01650 at 363.667 kb on - strand, within HGI48_RS01650 at 363.687 kb on - strand, within HGI48_RS01650 at 363.687 kb on - strand, within HGI48_RS01650
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 361,318 + HGI48_RS01635 0.69 +0.1 361,344 + HGI48_RS01635 0.71 +0.8 361,355 - HGI48_RS01635 0.71 -2.3 361,549 + HGI48_RS01635 0.85 +0.4 361,567 - HGI48_RS01635 0.86 -1.3 361,810 + -3.1 361,810 + +0.6 361,810 + -0.6 361,811 - -0.2 361,811 - +0.0 361,812 + -1.1 361,812 + -0.2 361,812 + -0.8 361,812 + +0.0 361,812 + -2.4 361,812 + -1.0 361,812 + -1.0 361,813 - -0.4 361,813 - +1.8 361,813 - +0.4 361,813 - -0.6 361,813 - +1.3 361,813 - +0.0 361,813 - +0.6 361,813 - -0.9 361,826 - +0.4 361,826 - -2.1 361,847 + -0.6 361,847 + -0.6 361,847 + -1.0 361,848 - -0.4 361,899 + -2.3 361,900 - +1.0 361,900 - -1.0 361,995 - +0.9 362,024 - -1.3 362,077 + +0.0 362,077 + +1.3 362,078 - -0.6 362,078 - +1.0 362,163 - +0.3 362,177 + +0.0 362,177 + +0.4 362,178 - -0.3 362,178 - +1.5 362,178 - +0.0 362,178 - +0.5 362,178 - -1.3 362,178 - -1.0 362,178 - -1.8 362,196 - +0.2 362,211 - +0.0 362,217 - -0.2 362,217 - -0.6 362,238 - -0.6 362,238 - -0.3 362,256 + HGI48_RS01640 0.12 -1.2 362,257 - HGI48_RS01640 0.12 +0.6 362,407 + HGI48_RS01640 0.36 -1.3 362,407 + HGI48_RS01640 0.36 -0.6 362,407 + HGI48_RS01640 0.36 -0.1 362,407 + HGI48_RS01640 0.36 +0.0 362,407 + HGI48_RS01640 0.36 -1.6 362,408 - +1.6 362,408 - +3.0 362,408 - HGI48_RS01640 0.36 +0.0 362,408 - HGI48_RS01640 0.36 -0.6 362,408 - HGI48_RS01640 0.36 -1.0 362,572 - HGI48_RS01640 0.61 -0.8 362,648 + HGI48_RS01640 0.73 +0.6 362,686 + HGI48_RS01640 0.79 +1.0 362,712 + HGI48_RS01640 0.83 -0.5 362,712 + -0.6 362,712 + HGI48_RS01640 0.83 -0.6 362,712 + HGI48_RS01640 0.83 -0.6 362,735 + HGI48_RS01640 0.87 +0.0 362,736 - HGI48_RS01640 0.87 -1.6 362,795 - -0.4 362,795 - -1.6 362,828 + +0.0 362,829 - -1.8 362,829 - +0.8 362,830 + +0.2 362,831 - -0.8 362,831 - -1.2 362,831 - +1.1 362,930 - HGI48_RS01645 0.27 +0.8 362,931 - HGI48_RS01645 0.27 +0.3 362,952 - HGI48_RS01645 0.32 +1.1 362,974 + HGI48_RS01645 0.37 -0.5 362,982 - HGI48_RS01645 0.39 -1.6 362,984 - +1.0 362,984 - HGI48_RS01645 0.39 +1.0 363,027 - HGI48_RS01645 0.50 -1.6 363,059 + HGI48_RS01645 0.57 +0.2 363,059 + HGI48_RS01645 0.57 -2.6 363,059 + HGI48_RS01645 0.57 -0.6 363,059 + HGI48_RS01645 0.57 -0.8 363,059 + HGI48_RS01645 0.57 -0.5 363,060 - HGI48_RS01645 0.57 +1.3 363,060 - -0.6 363,060 - HGI48_RS01645 0.57 +0.0 363,060 - HGI48_RS01645 0.57 +0.0 363,062 + HGI48_RS01645 0.58 -0.6 363,062 + HGI48_RS01645 0.58 +0.6 363,062 + HGI48_RS01645 0.58 +0.3 363,063 - HGI48_RS01645 0.58 -1.1 363,063 - HGI48_RS01645 0.58 +0.3 363,112 + HGI48_RS01645 0.69 +2.0 363,123 - HGI48_RS01645 0.72 +0.6 363,145 - HGI48_RS01645 0.77 -1.7 363,201 - -1.3 363,201 - +0.1 363,213 - -0.4 363,213 - -1.3 363,213 - +0.0 363,213 - -2.3 363,213 - -0.6 363,213 - +0.7 363,239 + -0.3 363,239 + -0.6 363,239 + +0.0 363,240 - -0.7 363,240 - +0.4 363,240 - +1.8 363,240 - +0.6 363,243 + +1.6 363,243 + -0.6 363,243 + +0.3 363,243 + +0.0 363,243 + +0.0 363,244 - +0.4 363,244 - +0.2 363,244 - -1.3 363,244 - -0.6 363,244 - -1.1 363,244 - -1.3 363,244 - +0.4 363,244 - -1.0 363,244 - +0.9 363,244 - +0.9 363,245 + +0.0 363,246 - -1.0 363,246 - -0.4 363,254 + -0.8 363,255 - -1.0 363,255 - -1.6 363,255 - -0.4 363,255 - -0.7 363,331 + +0.7 363,332 - -0.1 363,391 + -1.3 363,395 + -1.0 363,396 - -1.6 363,396 - -0.3 363,396 - +0.0 363,402 - +1.0 363,403 + -2.3 363,403 + -0.8 363,404 - -1.1 363,404 - +1.7 363,404 - +0.9 363,404 - +0.6 363,404 - +0.3 363,404 - -2.4 363,444 + +0.2 363,499 + -1.6 363,505 + +1.8 363,506 - +0.1 363,557 + HGI48_RS01650 0.13 -0.7 363,557 + HGI48_RS01650 0.13 -1.3 363,557 + HGI48_RS01650 0.13 +0.3 363,557 + HGI48_RS01650 0.13 -0.3 363,557 + HGI48_RS01650 0.13 -0.2 363,558 - HGI48_RS01650 0.13 -0.6 363,558 - HGI48_RS01650 0.13 -0.4 363,561 + HGI48_RS01650 0.14 -1.0 363,561 + HGI48_RS01650 0.14 +0.6 363,561 + HGI48_RS01650 0.14 -0.1 363,561 + HGI48_RS01650 0.14 +0.3 363,562 - HGI48_RS01650 0.14 -1.4 363,562 - HGI48_RS01650 0.14 +1.8 363,570 + HGI48_RS01650 0.15 -0.3 363,571 - HGI48_RS01650 0.15 -0.0 363,653 + HGI48_RS01650 0.25 -1.0 363,653 + HGI48_RS01650 0.25 -0.3 363,654 - -0.6 363,654 - HGI48_RS01650 0.25 -0.3 363,654 - HGI48_RS01650 0.25 +0.2 363,666 + HGI48_RS01650 0.26 -2.0 363,666 + +0.4 363,666 + HGI48_RS01650 0.26 +1.9 363,666 + HGI48_RS01650 0.26 -0.0 363,666 + HGI48_RS01650 0.26 -1.6 363,666 + HGI48_RS01650 0.26 -0.1 363,667 - HGI48_RS01650 0.27 +0.5 363,667 - HGI48_RS01650 0.27 -0.8 363,667 - HGI48_RS01650 0.27 -1.8 363,667 - HGI48_RS01650 0.27 +0.0 363,667 - -0.6 363,667 - HGI48_RS01650 0.27 -0.1 363,667 - HGI48_RS01650 0.27 -0.6 363,687 - HGI48_RS01650 0.29 +2.0 363,687 - HGI48_RS01650 0.29 +1.2
Or see this region's nucleotide sequence