Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01600

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01590 and HGI48_RS01595 are separated by 10 nucleotidesHGI48_RS01595 and HGI48_RS01600 are separated by 37 nucleotidesHGI48_RS01600 and HGI48_RS01605 overlap by 4 nucleotides HGI48_RS01590: HGI48_RS01590 - divisome-associated lipoprotein YraP, at 352,156 to 352,731 _RS01590 HGI48_RS01595: HGI48_RS01595 - DnaA initiator-associating protein DiaA, at 352,742 to 353,332 _RS01595 HGI48_RS01600: HGI48_RS01600 - YraN family protein, at 353,370 to 353,726 _RS01600 HGI48_RS01605: HGI48_RS01605 - penicillin-binding protein activator, at 353,723 to 355,756 _RS01605 Position (kb) 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 352.409 kb on + strandat 352.410 kb on - strand, within HGI48_RS01590at 352.437 kb on + strand, within HGI48_RS01590at 352.540 kb on + strand, within HGI48_RS01590at 352.703 kb on - strandat 352.722 kb on - strandat 352.807 kb on + strand, within HGI48_RS01595at 352.808 kb on - strand, within HGI48_RS01595at 352.808 kb on - strand, within HGI48_RS01595at 352.808 kb on - strandat 353.037 kb on + strand, within HGI48_RS01595at 353.037 kb on + strand, within HGI48_RS01595at 353.095 kb on + strand, within HGI48_RS01595at 353.096 kb on - strand, within HGI48_RS01595at 353.182 kb on + strand, within HGI48_RS01595at 353.182 kb on + strand, within HGI48_RS01595at 353.254 kb on + strand, within HGI48_RS01595at 353.255 kb on - strand, within HGI48_RS01595at 353.317 kb on + strandat 353.317 kb on + strandat 353.430 kb on + strand, within HGI48_RS01600at 353.431 kb on - strand, within HGI48_RS01600at 353.526 kb on - strand, within HGI48_RS01600at 353.528 kb on + strand, within HGI48_RS01600at 353.529 kb on - strand, within HGI48_RS01600at 353.529 kb on - strand, within HGI48_RS01600at 353.606 kb on + strand, within HGI48_RS01600at 353.607 kb on - strand, within HGI48_RS01600at 353.773 kb on + strandat 353.773 kb on + strandat 353.774 kb on - strandat 353.803 kb on + strandat 353.803 kb on + strandat 353.804 kb on - strandat 353.903 kb on + strandat 353.904 kb on - strandat 354.039 kb on + strand, within HGI48_RS01605at 354.057 kb on + strand, within HGI48_RS01605at 354.139 kb on + strand, within HGI48_RS01605at 354.139 kb on + strand, within HGI48_RS01605at 354.139 kb on + strand, within HGI48_RS01605at 354.139 kb on + strand, within HGI48_RS01605at 354.139 kb on + strand, within HGI48_RS01605at 354.139 kb on + strand, within HGI48_RS01605at 354.140 kb on - strandat 354.140 kb on - strand, within HGI48_RS01605at 354.140 kb on - strand, within HGI48_RS01605at 354.140 kb on - strand, within HGI48_RS01605at 354.140 kb on - strandat 354.141 kb on + strandat 354.141 kb on + strand, within HGI48_RS01605at 354.141 kb on + strand, within HGI48_RS01605at 354.141 kb on + strand, within HGI48_RS01605at 354.141 kb on + strand, within HGI48_RS01605at 354.141 kb on + strand, within HGI48_RS01605at 354.141 kb on + strand, within HGI48_RS01605at 354.141 kb on + strand, within HGI48_RS01605at 354.141 kb on + strand, within HGI48_RS01605at 354.142 kb on - strand, within HGI48_RS01605at 354.142 kb on - strand, within HGI48_RS01605at 354.142 kb on - strand, within HGI48_RS01605at 354.142 kb on - strand, within HGI48_RS01605at 354.142 kb on - strand, within HGI48_RS01605at 354.142 kb on - strand, within HGI48_RS01605at 354.221 kb on - strand, within HGI48_RS01605at 354.254 kb on - strand, within HGI48_RS01605at 354.293 kb on - strand, within HGI48_RS01605at 354.437 kb on - strand, within HGI48_RS01605at 354.488 kb on + strand, within HGI48_RS01605at 354.499 kb on - strand, within HGI48_RS01605at 354.499 kb on - strand, within HGI48_RS01605at 354.499 kb on - strand, within HGI48_RS01605at 354.653 kb on - strandat 354.653 kb on - strand, within HGI48_RS01605at 354.667 kb on + strand, within HGI48_RS01605at 354.678 kb on + strand, within HGI48_RS01605at 354.715 kb on + strand, within HGI48_RS01605

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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352,409 + +1.0
352,410 - HGI48_RS01590 0.44 -1.0
352,437 + HGI48_RS01590 0.49 -1.6
352,540 + HGI48_RS01590 0.67 -1.0
352,703 - -0.6
352,722 - +1.0
352,807 + HGI48_RS01595 0.11 +1.0
352,808 - HGI48_RS01595 0.11 -0.5
352,808 - HGI48_RS01595 0.11 +0.8
352,808 - +2.3
353,037 + HGI48_RS01595 0.50 +1.8
353,037 + HGI48_RS01595 0.50 +1.3
353,095 + HGI48_RS01595 0.60 +0.0
353,096 - HGI48_RS01595 0.60 -0.0
353,182 + HGI48_RS01595 0.74 -0.3
353,182 + HGI48_RS01595 0.74 +0.8
353,254 + HGI48_RS01595 0.87 +0.7
353,255 - HGI48_RS01595 0.87 +0.4
353,317 + +0.3
353,317 + +0.0
353,430 + HGI48_RS01600 0.17 -1.3
353,431 - HGI48_RS01600 0.17 +0.7
353,526 - HGI48_RS01600 0.44 -0.4
353,528 + HGI48_RS01600 0.44 +1.4
353,529 - HGI48_RS01600 0.45 +0.4
353,529 - HGI48_RS01600 0.45 +0.4
353,606 + HGI48_RS01600 0.66 -0.5
353,607 - HGI48_RS01600 0.66 -2.1
353,773 + -1.4
353,773 + +1.7
353,774 - -1.6
353,803 + -0.3
353,803 + +1.3
353,804 - -0.7
353,903 + -0.6
353,904 - -0.3
354,039 + HGI48_RS01605 0.16 -0.3
354,057 + HGI48_RS01605 0.16 +4.4
354,139 + HGI48_RS01605 0.20 +0.6
354,139 + HGI48_RS01605 0.20 -1.0
354,139 + HGI48_RS01605 0.20 -1.6
354,139 + HGI48_RS01605 0.20 -1.8
354,139 + HGI48_RS01605 0.20 -0.6
354,139 + HGI48_RS01605 0.20 +1.0
354,140 - +0.4
354,140 - HGI48_RS01605 0.21 -1.4
354,140 - HGI48_RS01605 0.21 +0.4
354,140 - HGI48_RS01605 0.21 -1.0
354,140 - +0.4
354,141 + +0.4
354,141 + HGI48_RS01605 0.21 -2.0
354,141 + HGI48_RS01605 0.21 +0.7
354,141 + HGI48_RS01605 0.21 -0.6
354,141 + HGI48_RS01605 0.21 +1.5
354,141 + HGI48_RS01605 0.21 -1.1
354,141 + HGI48_RS01605 0.21 +1.0
354,141 + HGI48_RS01605 0.21 -3.1
354,141 + HGI48_RS01605 0.21 -1.3
354,142 - HGI48_RS01605 0.21 -1.6
354,142 - HGI48_RS01605 0.21 -0.6
354,142 - HGI48_RS01605 0.21 +0.7
354,142 - HGI48_RS01605 0.21 +0.3
354,142 - HGI48_RS01605 0.21 +0.0
354,142 - HGI48_RS01605 0.21 -1.4
354,221 - HGI48_RS01605 0.24 -0.9
354,254 - HGI48_RS01605 0.26 -1.3
354,293 - HGI48_RS01605 0.28 -2.4
354,437 - HGI48_RS01605 0.35 +0.8
354,488 + HGI48_RS01605 0.38 +0.5
354,499 - HGI48_RS01605 0.38 +0.6
354,499 - HGI48_RS01605 0.38 -1.0
354,499 - HGI48_RS01605 0.38 +0.8
354,653 - -0.6
354,653 - HGI48_RS01605 0.46 -0.3
354,667 + HGI48_RS01605 0.46 +1.2
354,678 + HGI48_RS01605 0.47 +1.2
354,715 + HGI48_RS01605 0.49 +0.0

Or see this region's nucleotide sequence