Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01345

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS01340 and HGI48_RS01345 are separated by 152 nucleotidesHGI48_RS01345 and HGI48_RS01350 are separated by 314 nucleotides HGI48_RS01340: HGI48_RS01340 - oxidoreductase, at 296,853 to 297,839 _RS01340 HGI48_RS01345: HGI48_RS01345 - RNase E specificity factor CsrD, at 297,992 to 299,938 _RS01345 HGI48_RS01350: HGI48_RS01350 - rod shape-determining protein MreB, at 300,253 to 301,296 _RS01350 Position (kb) 297 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 297.057 kb on + strand, within HGI48_RS01340at 297.057 kb on + strandat 297.057 kb on + strand, within HGI48_RS01340at 297.057 kb on + strandat 297.058 kb on - strandat 297.058 kb on - strand, within HGI48_RS01340at 297.058 kb on - strand, within HGI48_RS01340at 297.058 kb on - strand, within HGI48_RS01340at 297.058 kb on - strand, within HGI48_RS01340at 297.058 kb on - strand, within HGI48_RS01340at 297.058 kb on - strand, within HGI48_RS01340at 297.058 kb on - strand, within HGI48_RS01340at 297.071 kb on + strand, within HGI48_RS01340at 297.071 kb on + strand, within HGI48_RS01340at 297.283 kb on + strandat 297.283 kb on + strandat 297.693 kb on - strand, within HGI48_RS01340at 297.698 kb on + strand, within HGI48_RS01340at 297.702 kb on - strand, within HGI48_RS01340at 297.702 kb on - strand, within HGI48_RS01340at 297.716 kb on + strand, within HGI48_RS01340at 297.717 kb on - strand, within HGI48_RS01340at 297.717 kb on - strand, within HGI48_RS01340at 297.717 kb on - strand, within HGI48_RS01340at 297.717 kb on - strand, within HGI48_RS01340at 297.717 kb on - strand, within HGI48_RS01340at 297.718 kb on + strand, within HGI48_RS01340at 297.718 kb on + strand, within HGI48_RS01340at 297.718 kb on + strand, within HGI48_RS01340at 297.718 kb on + strandat 297.718 kb on + strandat 297.718 kb on + strand, within HGI48_RS01340at 297.718 kb on + strand, within HGI48_RS01340at 297.719 kb on - strand, within HGI48_RS01340at 297.719 kb on - strand, within HGI48_RS01340at 297.719 kb on - strand, within HGI48_RS01340at 297.719 kb on - strand, within HGI48_RS01340at 297.765 kb on + strandat 297.765 kb on + strandat 297.766 kb on - strandat 297.826 kb on - strandat 297.829 kb on - strandat 297.840 kb on - strandat 297.867 kb on + strandat 297.868 kb on - strandat 297.873 kb on + strandat 297.873 kb on + strandat 297.873 kb on + strandat 297.873 kb on + strandat 297.874 kb on - strandat 297.874 kb on - strandat 297.874 kb on - strandat 297.882 kb on + strandat 297.882 kb on + strandat 297.883 kb on - strandat 297.890 kb on - strandat 297.890 kb on - strandat 297.890 kb on - strandat 297.890 kb on - strandat 297.890 kb on - strandat 297.890 kb on - strandat 297.891 kb on + strandat 297.892 kb on - strandat 297.892 kb on - strandat 297.892 kb on - strandat 297.892 kb on - strandat 297.892 kb on - strandat 297.892 kb on - strandat 297.907 kb on + strandat 297.908 kb on - strandat 297.919 kb on + strandat 298.017 kb on + strandat 298.053 kb on + strandat 298.053 kb on + strandat 298.053 kb on + strandat 298.054 kb on - strandat 298.054 kb on - strandat 298.054 kb on - strandat 298.054 kb on - strandat 298.088 kb on + strandat 298.088 kb on + strandat 298.088 kb on + strandat 298.088 kb on + strandat 298.089 kb on - strandat 298.089 kb on - strandat 298.089 kb on - strandat 298.090 kb on + strandat 298.090 kb on + strandat 298.091 kb on - strandat 298.091 kb on - strandat 298.250 kb on + strand, within HGI48_RS01345at 298.250 kb on + strand, within HGI48_RS01345at 298.250 kb on + strand, within HGI48_RS01345at 298.250 kb on + strandat 298.250 kb on + strand, within HGI48_RS01345at 298.251 kb on - strand, within HGI48_RS01345at 298.251 kb on - strand, within HGI48_RS01345at 298.254 kb on + strand, within HGI48_RS01345at 298.254 kb on + strand, within HGI48_RS01345at 298.255 kb on - strandat 298.255 kb on - strand, within HGI48_RS01345at 298.257 kb on + strand, within HGI48_RS01345at 298.257 kb on + strand, within HGI48_RS01345at 298.257 kb on + strand, within HGI48_RS01345at 298.258 kb on - strand, within HGI48_RS01345at 298.258 kb on - strand, within HGI48_RS01345at 298.258 kb on - strandat 298.258 kb on - strand, within HGI48_RS01345at 298.305 kb on - strand, within HGI48_RS01345at 298.361 kb on + strand, within HGI48_RS01345at 298.362 kb on - strand, within HGI48_RS01345at 298.362 kb on - strand, within HGI48_RS01345at 298.383 kb on + strand, within HGI48_RS01345at 298.384 kb on - strand, within HGI48_RS01345at 298.392 kb on - strand, within HGI48_RS01345at 298.521 kb on + strand, within HGI48_RS01345at 298.652 kb on - strand, within HGI48_RS01345at 298.694 kb on - strand, within HGI48_RS01345at 298.818 kb on - strand, within HGI48_RS01345at 298.838 kb on + strand, within HGI48_RS01345at 298.839 kb on - strandat 298.907 kb on + strand, within HGI48_RS01345at 298.910 kb on + strand, within HGI48_RS01345at 298.910 kb on + strand, within HGI48_RS01345at 298.911 kb on - strand, within HGI48_RS01345at 298.911 kb on - strand, within HGI48_RS01345at 298.911 kb on - strand, within HGI48_RS01345at 298.911 kb on - strand, within HGI48_RS01345at 298.911 kb on - strandat 298.996 kb on + strand, within HGI48_RS01345at 298.997 kb on - strand, within HGI48_RS01345at 299.057 kb on + strandat 299.057 kb on + strand, within HGI48_RS01345at 299.212 kb on + strand, within HGI48_RS01345at 299.212 kb on + strand, within HGI48_RS01345at 299.212 kb on + strand, within HGI48_RS01345at 299.212 kb on + strand, within HGI48_RS01345at 299.212 kb on + strand, within HGI48_RS01345at 299.212 kb on + strand, within HGI48_RS01345at 299.212 kb on + strand, within HGI48_RS01345at 299.212 kb on + strand, within HGI48_RS01345at 299.212 kb on + strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.213 kb on - strand, within HGI48_RS01345at 299.218 kb on - strand, within HGI48_RS01345at 299.240 kb on + strand, within HGI48_RS01345at 299.304 kb on - strand, within HGI48_RS01345at 299.336 kb on + strand, within HGI48_RS01345at 299.336 kb on + strand, within HGI48_RS01345at 299.336 kb on + strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strandat 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.337 kb on - strand, within HGI48_RS01345at 299.375 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.570 kb on + strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strandat 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strandat 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.571 kb on - strand, within HGI48_RS01345at 299.573 kb on - strand, within HGI48_RS01345at 299.573 kb on - strandat 299.592 kb on + strand, within HGI48_RS01345at 299.593 kb on - strandat 299.593 kb on - strand, within HGI48_RS01345at 299.593 kb on - strand, within HGI48_RS01345at 299.666 kb on + strandat 299.667 kb on - strand, within HGI48_RS01345at 299.668 kb on + strand, within HGI48_RS01345at 299.669 kb on - strand, within HGI48_RS01345at 299.669 kb on - strand, within HGI48_RS01345at 299.669 kb on - strand, within HGI48_RS01345at 299.811 kb on + strandat 299.812 kb on - strandat 299.812 kb on - strandat 299.812 kb on - strandat 299.815 kb on + strandat 299.816 kb on - strandat 299.930 kb on + strandat 299.930 kb on + strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.931 kb on - strandat 299.959 kb on - strandat 299.959 kb on - strandat 299.959 kb on - strandat 299.963 kb on + strandat 299.964 kb on - strandat 299.964 kb on - strandat 299.964 kb on - strandat 299.964 kb on - strandat 299.964 kb on - strandat 300.034 kb on + strandat 300.034 kb on + strandat 300.035 kb on - strandat 300.035 kb on - strandat 300.035 kb on - strandat 300.157 kb on + strandat 300.200 kb on + strandat 300.200 kb on + strandat 300.200 kb on + strandat 300.205 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
297,057 + HGI48_RS01340 0.21 +0.3
297,057 + -0.6
297,057 + HGI48_RS01340 0.21 +0.5
297,057 + +1.0
297,058 - +1.0
297,058 - HGI48_RS01340 0.21 +0.0
297,058 - HGI48_RS01340 0.21 -1.0
297,058 - HGI48_RS01340 0.21 -0.3
297,058 - HGI48_RS01340 0.21 +0.1
297,058 - HGI48_RS01340 0.21 -0.1
297,058 - HGI48_RS01340 0.21 +0.9
297,058 - HGI48_RS01340 0.21 -1.3
297,071 + HGI48_RS01340 0.22 +1.0
297,071 + HGI48_RS01340 0.22 +0.6
297,283 + -0.6
297,283 + +1.0
297,693 - HGI48_RS01340 0.85 -1.4
297,698 + HGI48_RS01340 0.86 +0.0
297,702 - HGI48_RS01340 0.86 -0.3
297,702 - HGI48_RS01340 0.86 +0.3
297,716 + HGI48_RS01340 0.87 -1.0
297,717 - HGI48_RS01340 0.88 -0.1
297,717 - HGI48_RS01340 0.88 +0.3
297,717 - HGI48_RS01340 0.88 -0.8
297,717 - HGI48_RS01340 0.88 +0.2
297,717 - HGI48_RS01340 0.88 +2.0
297,718 + HGI48_RS01340 0.88 +0.3
297,718 + HGI48_RS01340 0.88 +0.2
297,718 + HGI48_RS01340 0.88 +0.7
297,718 + +0.4
297,718 + +1.0
297,718 + HGI48_RS01340 0.88 -0.3
297,718 + HGI48_RS01340 0.88 -1.8
297,719 - HGI48_RS01340 0.88 +0.8
297,719 - HGI48_RS01340 0.88 +0.3
297,719 - HGI48_RS01340 0.88 -0.1
297,719 - HGI48_RS01340 0.88 +4.4
297,765 + -0.6
297,765 + -0.2
297,766 - -0.3
297,826 - +0.2
297,829 - -0.8
297,840 - -1.6
297,867 + -0.4
297,868 - +0.3
297,873 + -0.2
297,873 + +2.3
297,873 + +0.4
297,873 + +2.6
297,874 - -1.1
297,874 - -0.6
297,874 - -0.4
297,882 + +0.8
297,882 + +0.0
297,883 - +1.0
297,890 - -1.0
297,890 - -1.5
297,890 - -0.6
297,890 - -1.3
297,890 - -1.6
297,890 - +0.6
297,891 + +0.0
297,892 - +1.0
297,892 - -0.6
297,892 - -0.3
297,892 - -1.3
297,892 - +0.7
297,892 - -1.1
297,907 + +2.3
297,908 - +0.7
297,919 + -1.0
298,017 + +1.4
298,053 + -0.7
298,053 + -0.3
298,053 + -2.1
298,054 - +0.6
298,054 - +0.0
298,054 - -0.7
298,054 - -0.8
298,088 + +0.0
298,088 + +0.0
298,088 + -0.3
298,088 + -1.8
298,089 - +0.2
298,089 - +0.4
298,089 - -1.0
298,090 + -1.8
298,090 + +0.2
298,091 - +1.5
298,091 - -1.2
298,250 + HGI48_RS01345 0.13 -1.3
298,250 + HGI48_RS01345 0.13 -1.0
298,250 + HGI48_RS01345 0.13 -0.6
298,250 + -0.6
298,250 + HGI48_RS01345 0.13 -1.6
298,251 - HGI48_RS01345 0.13 +0.0
298,251 - HGI48_RS01345 0.13 +0.6
298,254 + HGI48_RS01345 0.13 -1.6
298,254 + HGI48_RS01345 0.13 -0.2
298,255 - +3.0
298,255 - HGI48_RS01345 0.14 -2.8
298,257 + HGI48_RS01345 0.14 -0.3
298,257 + HGI48_RS01345 0.14 -0.4
298,257 + HGI48_RS01345 0.14 +0.9
298,258 - HGI48_RS01345 0.14 -1.6
298,258 - HGI48_RS01345 0.14 -2.9
298,258 - -0.6
298,258 - HGI48_RS01345 0.14 +0.7
298,305 - HGI48_RS01345 0.16 +0.6
298,361 + HGI48_RS01345 0.19 +2.3
298,362 - HGI48_RS01345 0.19 -1.1
298,362 - HGI48_RS01345 0.19 -1.3
298,383 + HGI48_RS01345 0.20 -0.4
298,384 - HGI48_RS01345 0.20 +0.1
298,392 - HGI48_RS01345 0.21 +0.0
298,521 + HGI48_RS01345 0.27 +0.5
298,652 - HGI48_RS01345 0.34 -0.1
298,694 - HGI48_RS01345 0.36 -0.6
298,818 - HGI48_RS01345 0.42 -1.4
298,838 + HGI48_RS01345 0.43 +0.3
298,839 - +1.0
298,907 + HGI48_RS01345 0.47 -0.8
298,910 + HGI48_RS01345 0.47 +0.5
298,910 + HGI48_RS01345 0.47 +0.2
298,911 - HGI48_RS01345 0.47 +1.0
298,911 - HGI48_RS01345 0.47 -0.9
298,911 - HGI48_RS01345 0.47 -0.8
298,911 - HGI48_RS01345 0.47 +1.7
298,911 - +1.4
298,996 + HGI48_RS01345 0.52 -0.9
298,997 - HGI48_RS01345 0.52 -0.3
299,057 + +0.4
299,057 + HGI48_RS01345 0.55 -1.6
299,212 + HGI48_RS01345 0.63 -1.3
299,212 + HGI48_RS01345 0.63 -0.1
299,212 + HGI48_RS01345 0.63 -1.6
299,212 + HGI48_RS01345 0.63 +0.4
299,212 + HGI48_RS01345 0.63 +0.3
299,212 + HGI48_RS01345 0.63 +0.6
299,212 + HGI48_RS01345 0.63 +0.0
299,212 + HGI48_RS01345 0.63 -2.0
299,212 + HGI48_RS01345 0.63 +0.4
299,213 - HGI48_RS01345 0.63 -0.6
299,213 - HGI48_RS01345 0.63 -0.1
299,213 - HGI48_RS01345 0.63 -0.6
299,213 - HGI48_RS01345 0.63 +1.4
299,213 - HGI48_RS01345 0.63 -1.6
299,213 - HGI48_RS01345 0.63 +0.4
299,213 - HGI48_RS01345 0.63 -1.2
299,213 - HGI48_RS01345 0.63 +0.8
299,213 - HGI48_RS01345 0.63 -1.8
299,213 - HGI48_RS01345 0.63 +0.7
299,213 - HGI48_RS01345 0.63 -0.5
299,213 - HGI48_RS01345 0.63 +0.1
299,213 - HGI48_RS01345 0.63 +0.3
299,213 - HGI48_RS01345 0.63 +1.0
299,218 - HGI48_RS01345 0.63 +0.4
299,240 + HGI48_RS01345 0.64 -0.2
299,304 - HGI48_RS01345 0.67 -1.2
299,336 + HGI48_RS01345 0.69 -0.9
299,336 + HGI48_RS01345 0.69 -1.0
299,336 + HGI48_RS01345 0.69 -2.0
299,337 - HGI48_RS01345 0.69 +5.8
299,337 - HGI48_RS01345 0.69 -1.0
299,337 - HGI48_RS01345 0.69 +0.2
299,337 - HGI48_RS01345 0.69 +1.0
299,337 - HGI48_RS01345 0.69 -0.8
299,337 - +1.4
299,337 - HGI48_RS01345 0.69 +1.4
299,337 - HGI48_RS01345 0.69 -1.3
299,337 - HGI48_RS01345 0.69 -1.0
299,375 + HGI48_RS01345 0.71 -0.2
299,570 + HGI48_RS01345 0.81 -0.8
299,570 + HGI48_RS01345 0.81 +1.0
299,570 + HGI48_RS01345 0.81 -1.6
299,570 + HGI48_RS01345 0.81 +0.4
299,570 + HGI48_RS01345 0.81 +0.0
299,570 + HGI48_RS01345 0.81 +1.6
299,571 - HGI48_RS01345 0.81 +0.1
299,571 - +0.4
299,571 - HGI48_RS01345 0.81 -0.2
299,571 - HGI48_RS01345 0.81 -1.0
299,571 - HGI48_RS01345 0.81 +1.3
299,571 - -0.6
299,571 - HGI48_RS01345 0.81 -0.7
299,571 - HGI48_RS01345 0.81 -0.0
299,571 - HGI48_RS01345 0.81 -1.0
299,571 - HGI48_RS01345 0.81 +0.2
299,573 - HGI48_RS01345 0.81 +0.0
299,573 - +0.4
299,592 + HGI48_RS01345 0.82 +0.0
299,593 - +0.0
299,593 - HGI48_RS01345 0.82 +0.3
299,593 - HGI48_RS01345 0.82 +0.2
299,666 + +0.4
299,667 - HGI48_RS01345 0.86 -1.6
299,668 + HGI48_RS01345 0.86 -1.3
299,669 - HGI48_RS01345 0.86 -1.6
299,669 - HGI48_RS01345 0.86 +1.2
299,669 - HGI48_RS01345 0.86 -0.8
299,811 + -0.8
299,812 - +0.2
299,812 - -1.1
299,812 - +0.0
299,815 + +1.0
299,816 - +0.6
299,930 + -2.1
299,930 + +0.3
299,931 - -0.2
299,931 - -0.8
299,931 - -1.6
299,931 - -1.0
299,931 - -0.8
299,931 - +0.4
299,931 - +0.5
299,931 - -0.6
299,959 - -0.1
299,959 - -0.6
299,959 - -0.6
299,963 + +1.2
299,964 - -1.8
299,964 - -1.3
299,964 - +1.6
299,964 - +1.0
299,964 - +0.9
300,034 + +0.0
300,034 + -0.4
300,035 - -1.3
300,035 - -0.8
300,035 - -1.3
300,157 + -0.4
300,200 + -0.3
300,200 + +1.0
300,200 + -2.0
300,205 + -1.6

Or see this region's nucleotide sequence