Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01190

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01185 and HGI48_RS01190 overlap by 1 nucleotidesHGI48_RS01190 and HGI48_RS01195 are separated by 91 nucleotidesHGI48_RS01195 and HGI48_RS01200 are separated by 311 nucleotides HGI48_RS01185: HGI48_RS01185 - uroporphyrinogen decarboxylase, at 265,369 to 266,442 _RS01185 HGI48_RS01190: HGI48_RS01190 - deoxyribonuclease V, at 266,442 to 267,116 _RS01190 HGI48_RS01195: HGI48_RS01195 - YjaG family protein, at 267,208 to 267,798 _RS01195 HGI48_RS01200: HGI48_RS01200 - DNA-binding protein HU-alpha, at 268,110 to 268,382 _RS01200 Position (kb) 266 267 268Strain fitness (log2 ratio) -2 -1 0 1 2at 266.422 kb on + strandat 266.448 kb on - strandat 266.507 kb on + strandat 266.507 kb on + strandat 266.507 kb on + strandat 266.507 kb on + strandat 266.508 kb on - strandat 266.508 kb on - strandat 266.625 kb on + strand, within HGI48_RS01190at 266.626 kb on - strandat 266.640 kb on - strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strandat 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strandat 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strandat 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.660 kb on + strand, within HGI48_RS01190at 266.660 kb on + strand, within HGI48_RS01190at 266.660 kb on + strand, within HGI48_RS01190at 266.660 kb on + strand, within HGI48_RS01190at 266.661 kb on - strand, within HGI48_RS01190at 266.661 kb on - strand, within HGI48_RS01190at 266.661 kb on - strand, within HGI48_RS01190at 266.661 kb on - strand, within HGI48_RS01190at 267.114 kb on + strandat 267.114 kb on + strandat 267.115 kb on - strandat 267.115 kb on - strandat 267.115 kb on - strandat 267.115 kb on - strandat 267.140 kb on - strandat 267.151 kb on + strandat 267.151 kb on + strandat 267.151 kb on + strandat 267.153 kb on + strandat 267.176 kb on + strandat 267.188 kb on + strandat 267.188 kb on + strandat 267.188 kb on + strandat 267.191 kb on + strandat 267.191 kb on + strandat 267.191 kb on + strandat 267.192 kb on - strandat 267.192 kb on - strandat 267.202 kb on + strandat 267.203 kb on - strandat 267.213 kb on - strandat 267.291 kb on + strand, within HGI48_RS01195at 267.291 kb on + strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.295 kb on + strand, within HGI48_RS01195at 267.304 kb on + strand, within HGI48_RS01195at 267.304 kb on + strand, within HGI48_RS01195at 267.305 kb on - strand, within HGI48_RS01195at 267.305 kb on - strand, within HGI48_RS01195at 267.308 kb on - strandat 267.358 kb on - strand, within HGI48_RS01195at 267.476 kb on + strand, within HGI48_RS01195at 267.476 kb on + strand, within HGI48_RS01195at 267.732 kb on - strandat 267.790 kb on + strandat 267.804 kb on + strandat 267.816 kb on + strandat 267.816 kb on + strandat 267.817 kb on - strandat 267.817 kb on - strandat 267.839 kb on + strandat 267.868 kb on + strandat 267.923 kb on + strandat 267.923 kb on + strandat 267.938 kb on - strandat 267.984 kb on + strandat 267.984 kb on + strandat 267.992 kb on + strandat 267.992 kb on + strandat 267.992 kb on + strandat 268.040 kb on + strandat 268.040 kb on + strandat 268.040 kb on + strandat 268.040 kb on + strandat 268.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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266,422 + -0.1
266,448 - +0.6
266,507 + +0.0
266,507 + +0.0
266,507 + -1.0
266,507 + -0.1
266,508 - -1.0
266,508 - +0.6
266,625 + HGI48_RS01190 0.27 -1.3
266,626 - +2.3
266,640 - HGI48_RS01190 0.29 +1.0
266,658 + HGI48_RS01190 0.32 +0.3
266,658 + HGI48_RS01190 0.32 -0.5
266,658 + HGI48_RS01190 0.32 -0.5
266,658 + HGI48_RS01190 0.32 +0.0
266,658 + HGI48_RS01190 0.32 +0.2
266,658 + HGI48_RS01190 0.32 +0.3
266,658 + HGI48_RS01190 0.32 +0.6
266,658 + HGI48_RS01190 0.32 -0.4
266,658 + HGI48_RS01190 0.32 +0.0
266,658 + HGI48_RS01190 0.32 -1.3
266,658 + HGI48_RS01190 0.32 -0.4
266,658 + HGI48_RS01190 0.32 -0.4
266,658 + HGI48_RS01190 0.32 -1.1
266,658 + HGI48_RS01190 0.32 +0.0
266,658 + HGI48_RS01190 0.32 -1.0
266,658 + +0.0
266,658 + HGI48_RS01190 0.32 +0.7
266,658 + HGI48_RS01190 0.32 -0.3
266,658 + HGI48_RS01190 0.32 -0.4
266,658 + HGI48_RS01190 0.32 +0.2
266,658 + HGI48_RS01190 0.32 -1.0
266,659 - HGI48_RS01190 0.32 +1.2
266,659 - HGI48_RS01190 0.32 +0.2
266,659 - HGI48_RS01190 0.32 -0.8
266,659 - HGI48_RS01190 0.32 -0.4
266,659 - HGI48_RS01190 0.32 +0.0
266,659 - +1.0
266,659 - HGI48_RS01190 0.32 -0.1
266,659 - HGI48_RS01190 0.32 -1.8
266,659 - +1.0
266,659 - HGI48_RS01190 0.32 +0.9
266,659 - HGI48_RS01190 0.32 +0.6
266,659 - HGI48_RS01190 0.32 +0.4
266,659 - HGI48_RS01190 0.32 +0.6
266,659 - HGI48_RS01190 0.32 -0.4
266,659 - HGI48_RS01190 0.32 -1.4
266,660 + HGI48_RS01190 0.32 -1.5
266,660 + HGI48_RS01190 0.32 -1.3
266,660 + HGI48_RS01190 0.32 +0.9
266,660 + HGI48_RS01190 0.32 +0.1
266,661 - HGI48_RS01190 0.32 -0.1
266,661 - HGI48_RS01190 0.32 -0.3
266,661 - HGI48_RS01190 0.32 +1.0
266,661 - HGI48_RS01190 0.32 +0.6
267,114 + -0.1
267,114 + +1.0
267,115 - -1.8
267,115 - -0.7
267,115 - -1.3
267,115 - -2.0
267,140 - +0.6
267,151 + -0.8
267,151 + -0.1
267,151 + +1.6
267,153 + +0.8
267,176 + +2.4
267,188 + -0.3
267,188 + -2.4
267,188 + +0.5
267,191 + +0.3
267,191 + +1.8
267,191 + -0.5
267,192 - -0.4
267,192 - -1.0
267,202 + +0.2
267,203 - -0.3
267,213 - +0.0
267,291 + HGI48_RS01195 0.14 -0.1
267,291 + HGI48_RS01195 0.14 +1.2
267,292 - HGI48_RS01195 0.14 -1.3
267,292 - HGI48_RS01195 0.14 -2.0
267,292 - HGI48_RS01195 0.14 -0.5
267,292 - HGI48_RS01195 0.14 +0.6
267,292 - HGI48_RS01195 0.14 -2.1
267,292 - HGI48_RS01195 0.14 -0.5
267,292 - HGI48_RS01195 0.14 -1.5
267,292 - HGI48_RS01195 0.14 +0.5
267,292 - HGI48_RS01195 0.14 +0.6
267,292 - HGI48_RS01195 0.14 -1.0
267,295 + HGI48_RS01195 0.15 -1.5
267,304 + HGI48_RS01195 0.16 +0.5
267,304 + HGI48_RS01195 0.16 +0.0
267,305 - HGI48_RS01195 0.16 +0.8
267,305 - HGI48_RS01195 0.16 -0.4
267,308 - +2.0
267,358 - HGI48_RS01195 0.25 +0.6
267,476 + HGI48_RS01195 0.45 +1.0
267,476 + HGI48_RS01195 0.45 -0.7
267,732 - +2.0
267,790 + -0.5
267,804 + +0.2
267,816 + +0.8
267,816 + +0.0
267,817 - -1.3
267,817 - +0.6
267,839 + -2.0
267,868 + -0.5
267,923 + -1.0
267,923 + +0.0
267,938 - +1.0
267,984 + +0.8
267,984 + -0.5
267,992 + -0.7
267,992 + +2.6
267,992 + -0.5
268,040 + -2.3
268,040 + -1.1
268,040 + +0.5
268,040 + -1.0
268,041 - -0.7

Or see this region's nucleotide sequence