Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00940 and HGI48_RS00945 are separated by 49 nucleotides HGI48_RS00945 and HGI48_RS00950 are separated by 96 nucleotides
HGI48_RS00940: HGI48_RS00940 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 213,463 to 214,950
_RS00940
HGI48_RS00945: HGI48_RS00945 - NAD(P)H-flavin reductase, at 215,000 to 215,701
_RS00945
HGI48_RS00950: HGI48_RS00950 - FAD-dependent oxidoreductase, at 215,798 to 217,489
_RS00950
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 214.986 kb on + strand at 215.017 kb on + strand at 215.018 kb on - strand at 215.023 kb on - strand at 215.349 kb on - strand, within HGI48_RS00945 at 215.349 kb on - strand at 215.352 kb on + strand, within HGI48_RS00945 at 215.352 kb on + strand, within HGI48_RS00945 at 215.353 kb on - strand, within HGI48_RS00945 at 215.353 kb on - strand, within HGI48_RS00945 at 215.400 kb on + strand, within HGI48_RS00945 at 215.401 kb on - strand, within HGI48_RS00945 at 215.438 kb on + strand at 215.595 kb on - strand, within HGI48_RS00945 at 215.595 kb on - strand, within HGI48_RS00945 at 215.675 kb on + strand at 215.754 kb on - strand at 215.799 kb on + strand at 215.799 kb on + strand at 215.799 kb on + strand at 215.799 kb on + strand at 215.800 kb on - strand at 215.800 kb on - strand at 215.800 kb on - strand at 215.800 kb on - strand at 215.820 kb on + strand at 215.827 kb on + strand at 215.827 kb on + strand at 215.828 kb on - strand at 215.828 kb on - strand at 215.965 kb on + strand at 215.966 kb on - strand at 216.070 kb on + strand at 216.071 kb on - strand at 216.071 kb on - strand, within HGI48_RS00950 at 216.071 kb on - strand, within HGI48_RS00950 at 216.071 kb on - strand, within HGI48_RS00950 at 216.172 kb on - strand, within HGI48_RS00950 at 216.172 kb on - strand, within HGI48_RS00950 at 216.326 kb on + strand at 216.326 kb on + strand at 216.326 kb on + strand, within HGI48_RS00950 at 216.326 kb on + strand, within HGI48_RS00950 at 216.326 kb on + strand, within HGI48_RS00950 at 216.326 kb on + strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.327 kb on - strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.372 kb on + strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.373 kb on - strand, within HGI48_RS00950 at 216.484 kb on - strand, within HGI48_RS00950 at 216.484 kb on - strand, within HGI48_RS00950 at 216.484 kb on - strand, within HGI48_RS00950 at 216.484 kb on - strand, within HGI48_RS00950 at 216.505 kb on + strand, within HGI48_RS00950 at 216.505 kb on + strand, within HGI48_RS00950 at 216.506 kb on - strand at 216.506 kb on - strand, within HGI48_RS00950 at 216.506 kb on - strand, within HGI48_RS00950 at 216.506 kb on - strand, within HGI48_RS00950 at 216.506 kb on - strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.612 kb on + strand, within HGI48_RS00950 at 216.613 kb on - strand, within HGI48_RS00950 at 216.613 kb on - strand, within HGI48_RS00950 at 216.613 kb on - strand, within HGI48_RS00950 at 216.677 kb on + strand, within HGI48_RS00950 at 216.677 kb on + strand, within HGI48_RS00950 at 216.677 kb on + strand, within HGI48_RS00950 at 216.677 kb on + strand, within HGI48_RS00950 at 216.678 kb on - strand, within HGI48_RS00950 at 216.678 kb on - strand, within HGI48_RS00950 at 216.678 kb on - strand, within HGI48_RS00950
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 214,986 + +0.1 215,017 + +0.1 215,018 - +1.1 215,023 - +0.1 215,349 - HGI48_RS00945 0.50 -0.5 215,349 - -0.5 215,352 + HGI48_RS00945 0.50 -0.7 215,352 + HGI48_RS00945 0.50 -0.1 215,353 - HGI48_RS00945 0.50 +0.2 215,353 - HGI48_RS00945 0.50 +0.1 215,400 + HGI48_RS00945 0.57 +0.7 215,401 - HGI48_RS00945 0.57 -0.5 215,438 + -0.5 215,595 - HGI48_RS00945 0.85 -0.7 215,595 - HGI48_RS00945 0.85 +0.7 215,675 + +0.3 215,754 - -0.3 215,799 + -2.6 215,799 + +0.2 215,799 + -0.3 215,799 + -0.2 215,800 - +0.2 215,800 - -0.5 215,800 - -1.5 215,800 - +0.3 215,820 + +1.4 215,827 + +3.2 215,827 + +0.7 215,828 - +2.1 215,828 - -0.5 215,965 + -0.1 215,966 - -0.3 216,070 + -0.5 216,071 - +0.1 216,071 - HGI48_RS00950 0.16 -1.1 216,071 - HGI48_RS00950 0.16 -0.9 216,071 - HGI48_RS00950 0.16 -2.3 216,172 - HGI48_RS00950 0.22 +0.8 216,172 - HGI48_RS00950 0.22 -0.9 216,326 + +1.6 216,326 + +1.8 216,326 + HGI48_RS00950 0.31 -0.7 216,326 + HGI48_RS00950 0.31 -0.2 216,326 + HGI48_RS00950 0.31 -0.6 216,326 + HGI48_RS00950 0.31 -0.4 216,327 - HGI48_RS00950 0.31 +0.5 216,327 - HGI48_RS00950 0.31 +1.1 216,327 - HGI48_RS00950 0.31 -0.9 216,327 - +3.1 216,327 - HGI48_RS00950 0.31 -0.2 216,327 - HGI48_RS00950 0.31 -0.3 216,327 - HGI48_RS00950 0.31 -0.4 216,327 - HGI48_RS00950 0.31 +1.1 216,327 - HGI48_RS00950 0.31 -0.1 216,372 + HGI48_RS00950 0.34 +1.7 216,372 + HGI48_RS00950 0.34 +0.7 216,372 + HGI48_RS00950 0.34 +0.4 216,372 + HGI48_RS00950 0.34 +0.1 216,372 + +0.1 216,372 + HGI48_RS00950 0.34 -1.0 216,372 + HGI48_RS00950 0.34 +0.3 216,372 + HGI48_RS00950 0.34 +0.3 216,372 + HGI48_RS00950 0.34 -0.4 216,372 + HGI48_RS00950 0.34 +0.1 216,372 + HGI48_RS00950 0.34 -1.3 216,372 + HGI48_RS00950 0.34 -0.9 216,372 + HGI48_RS00950 0.34 +1.7 216,372 + HGI48_RS00950 0.34 +0.7 216,372 + HGI48_RS00950 0.34 -1.0 216,372 + HGI48_RS00950 0.34 +0.5 216,373 - HGI48_RS00950 0.34 -0.7 216,373 - HGI48_RS00950 0.34 -0.6 216,373 - HGI48_RS00950 0.34 +0.1 216,373 - HGI48_RS00950 0.34 +1.3 216,373 - HGI48_RS00950 0.34 +0.1 216,373 - HGI48_RS00950 0.34 -1.1 216,373 - HGI48_RS00950 0.34 +0.5 216,373 - HGI48_RS00950 0.34 -1.4 216,373 - HGI48_RS00950 0.34 -1.5 216,484 - HGI48_RS00950 0.41 -0.7 216,484 - HGI48_RS00950 0.41 +1.5 216,484 - HGI48_RS00950 0.41 +0.6 216,484 - HGI48_RS00950 0.41 -0.1 216,505 + HGI48_RS00950 0.42 +1.1 216,505 + HGI48_RS00950 0.42 -1.0 216,506 - +0.5 216,506 - HGI48_RS00950 0.42 +0.4 216,506 - HGI48_RS00950 0.42 +0.4 216,506 - HGI48_RS00950 0.42 +0.4 216,506 - HGI48_RS00950 0.42 +0.1 216,612 + HGI48_RS00950 0.48 +0.3 216,612 + HGI48_RS00950 0.48 -1.7 216,612 + HGI48_RS00950 0.48 -1.8 216,612 + HGI48_RS00950 0.48 +1.1 216,612 + HGI48_RS00950 0.48 +0.6 216,612 + HGI48_RS00950 0.48 +1.1 216,612 + HGI48_RS00950 0.48 -0.5 216,612 + HGI48_RS00950 0.48 +0.2 216,613 - HGI48_RS00950 0.48 +1.7 216,613 - HGI48_RS00950 0.48 +0.1 216,613 - HGI48_RS00950 0.48 -0.9 216,677 + HGI48_RS00950 0.52 -0.7 216,677 + HGI48_RS00950 0.52 -1.5 216,677 + HGI48_RS00950 0.52 -0.7 216,677 + HGI48_RS00950 0.52 +1.5 216,678 - HGI48_RS00950 0.52 +0.3 216,678 - HGI48_RS00950 0.52 +0.1 216,678 - HGI48_RS00950 0.52 -0.7
Or see this region's nucleotide sequence