Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00905 and HGI48_RS00910 are separated by 97 nucleotides HGI48_RS00910 and HGI48_RS00915 are separated by 3 nucleotides HGI48_RS00915 and HGI48_RS00920 are separated by 3 nucleotides
HGI48_RS00905: HGI48_RS00905 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 207,461 to 209,098
_RS00905
HGI48_RS00910: HGI48_RS00910 - Sec-independent protein translocase subunit TatA, at 209,196 to 209,450
_RS00910
HGI48_RS00915: HGI48_RS00915 - Sec-independent protein translocase subunit TatB, at 209,454 to 210,026
_RS00915
HGI48_RS00920: HGI48_RS00920 - Sec-independent protein translocase subunit TatC, at 210,030 to 210,797
_RS00920
Position (kb) 209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.605 kb on + strand, within HGI48_RS00905 at 209.186 kb on + strand at 209.186 kb on + strand at 209.186 kb on + strand at 209.186 kb on + strand at 209.195 kb on + strand at 209.195 kb on + strand at 209.196 kb on - strand at 209.207 kb on + strand at 209.207 kb on + strand at 209.207 kb on + strand at 209.207 kb on + strand at 209.208 kb on - strand at 209.210 kb on + strand at 209.210 kb on + strand at 209.245 kb on + strand, within HGI48_RS00910 at 209.246 kb on - strand at 209.246 kb on - strand, within HGI48_RS00910 at 209.246 kb on - strand, within HGI48_RS00910 at 209.303 kb on + strand, within HGI48_RS00910 at 209.304 kb on - strand, within HGI48_RS00910 at 209.359 kb on + strand, within HGI48_RS00910 at 209.359 kb on + strand, within HGI48_RS00910 at 209.360 kb on - strand, within HGI48_RS00910 at 209.360 kb on - strand, within HGI48_RS00910 at 209.435 kb on + strand at 209.435 kb on + strand at 209.435 kb on + strand at 209.435 kb on + strand at 209.435 kb on + strand at 209.435 kb on + strand at 209.436 kb on - strand at 209.448 kb on + strand at 209.471 kb on + strand at 209.510 kb on - strand at 209.539 kb on + strand, within HGI48_RS00915 at 209.898 kb on - strand, within HGI48_RS00915 at 209.898 kb on - strand, within HGI48_RS00915 at 209.898 kb on - strand, within HGI48_RS00915 at 209.992 kb on + strand at 209.993 kb on - strand at 210.029 kb on + strand at 210.029 kb on + strand at 210.029 kb on + strand at 210.029 kb on + strand at 210.029 kb on + strand at 210.029 kb on + strand at 210.030 kb on - strand at 210.030 kb on - strand at 210.081 kb on - strand at 210.095 kb on + strand at 210.095 kb on + strand at 210.096 kb on - strand at 210.102 kb on - strand at 210.109 kb on + strand, within HGI48_RS00920 at 210.109 kb on + strand, within HGI48_RS00920 at 210.135 kb on + strand, within HGI48_RS00920 at 210.153 kb on + strand, within HGI48_RS00920 at 210.153 kb on + strand, within HGI48_RS00920 at 210.153 kb on + strand, within HGI48_RS00920 at 210.154 kb on - strand, within HGI48_RS00920 at 210.154 kb on - strand, within HGI48_RS00920 at 210.154 kb on - strand, within HGI48_RS00920 at 210.203 kb on + strand, within HGI48_RS00920 at 210.204 kb on - strand, within HGI48_RS00920 at 210.294 kb on + strand, within HGI48_RS00920 at 210.294 kb on + strand, within HGI48_RS00920 at 210.295 kb on - strand, within HGI48_RS00920 at 210.327 kb on + strand, within HGI48_RS00920 at 210.327 kb on + strand, within HGI48_RS00920 at 210.328 kb on - strand, within HGI48_RS00920 at 210.384 kb on + strand, within HGI48_RS00920 at 210.384 kb on + strand, within HGI48_RS00920 at 210.384 kb on + strand at 210.385 kb on - strand, within HGI48_RS00920 at 210.385 kb on - strand, within HGI48_RS00920 at 210.385 kb on - strand at 210.387 kb on - strand, within HGI48_RS00920 at 210.405 kb on + strand, within HGI48_RS00920 at 210.432 kb on - strand, within HGI48_RS00920
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 208,605 + HGI48_RS00905 0.70 -0.3 209,186 + +1.1 209,186 + -0.9 209,186 + -1.5 209,186 + +1.4 209,195 + -0.8 209,195 + -0.3 209,196 - -0.2 209,207 + +0.1 209,207 + +0.3 209,207 + +1.3 209,207 + -1.1 209,208 - -1.3 209,210 + -1.8 209,210 + +0.2 209,245 + HGI48_RS00910 0.19 -1.3 209,246 - +0.5 209,246 - HGI48_RS00910 0.20 -1.3 209,246 - HGI48_RS00910 0.20 -0.5 209,303 + HGI48_RS00910 0.42 -0.9 209,304 - HGI48_RS00910 0.42 -1.3 209,359 + HGI48_RS00910 0.64 +0.5 209,359 + HGI48_RS00910 0.64 -0.3 209,360 - HGI48_RS00910 0.64 -1.8 209,360 - HGI48_RS00910 0.64 -0.1 209,435 + +1.5 209,435 + -1.9 209,435 + +1.9 209,435 + -0.5 209,435 + -1.4 209,435 + +0.5 209,436 - -1.9 209,448 + +0.8 209,471 + -1.5 209,510 - -0.5 209,539 + HGI48_RS00915 0.15 -0.9 209,898 - HGI48_RS00915 0.77 -0.8 209,898 - HGI48_RS00915 0.77 -0.4 209,898 - HGI48_RS00915 0.77 -0.9 209,992 + +0.5 209,993 - -0.3 210,029 + +1.4 210,029 + +0.1 210,029 + -1.9 210,029 + -1.3 210,029 + -0.2 210,029 + -2.4 210,030 - -0.4 210,030 - -1.8 210,081 - +1.3 210,095 + +1.1 210,095 + +1.6 210,096 - -0.4 210,102 - -0.9 210,109 + HGI48_RS00920 0.10 -0.1 210,109 + HGI48_RS00920 0.10 +0.1 210,135 + HGI48_RS00920 0.14 -1.5 210,153 + HGI48_RS00920 0.16 +0.1 210,153 + HGI48_RS00920 0.16 +0.3 210,153 + HGI48_RS00920 0.16 -3.7 210,154 - HGI48_RS00920 0.16 -0.5 210,154 - HGI48_RS00920 0.16 -1.5 210,154 - HGI48_RS00920 0.16 -1.6 210,203 + HGI48_RS00920 0.23 -0.4 210,204 - HGI48_RS00920 0.23 +0.6 210,294 + HGI48_RS00920 0.34 -0.6 210,294 + HGI48_RS00920 0.34 -0.4 210,295 - HGI48_RS00920 0.35 -0.4 210,327 + HGI48_RS00920 0.39 -1.9 210,327 + HGI48_RS00920 0.39 -1.1 210,328 - HGI48_RS00920 0.39 -0.9 210,384 + HGI48_RS00920 0.46 -0.5 210,384 + HGI48_RS00920 0.46 -0.3 210,384 + +0.5 210,385 - HGI48_RS00920 0.46 -0.7 210,385 - HGI48_RS00920 0.46 +0.3 210,385 - +2.6 210,387 - HGI48_RS00920 0.46 -1.9 210,405 + HGI48_RS00920 0.49 -1.9 210,432 - HGI48_RS00920 0.52 -0.7
Or see this region's nucleotide sequence