Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00750 and HGI48_RS00755 overlap by 4 nucleotides HGI48_RS00755 and HGI48_RS00760 are separated by 29 nucleotides
HGI48_RS00750: HGI48_RS00750 - glycosyltransferase family 4 protein, at 172,034 to 173,152
_RS00750
HGI48_RS00755: HGI48_RS00755 - putative lipopolysaccharide heptosyltransferase III, at 173,149 to 174,234
_RS00755
HGI48_RS00760: HGI48_RS00760 - lipopolysaccharide heptosyltransferase RfaC, at 174,264 to 175,244
_RS00760
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1 at 173.192 kb on - strand at 173.192 kb on - strand at 173.496 kb on + strand, within HGI48_RS00755 at 173.497 kb on - strand, within HGI48_RS00755 at 173.497 kb on - strand, within HGI48_RS00755 at 173.497 kb on - strand, within HGI48_RS00755 at 173.497 kb on - strand, within HGI48_RS00755 at 173.593 kb on - strand, within HGI48_RS00755 at 173.677 kb on + strand, within HGI48_RS00755 at 173.689 kb on + strand, within HGI48_RS00755 at 173.725 kb on + strand, within HGI48_RS00755 at 173.726 kb on - strand at 173.726 kb on - strand, within HGI48_RS00755 at 173.823 kb on - strand, within HGI48_RS00755 at 173.926 kb on - strand, within HGI48_RS00755 at 173.926 kb on - strand at 173.955 kb on - strand, within HGI48_RS00755 at 174.193 kb on - strand at 174.196 kb on - strand at 174.196 kb on - strand at 174.196 kb on - strand at 174.238 kb on - strand at 174.238 kb on - strand at 174.249 kb on - strand at 174.260 kb on - strand at 174.265 kb on + strand at 174.266 kb on - strand at 174.266 kb on - strand at 174.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 173,192 - -1.3 173,192 - -0.2 173,496 + HGI48_RS00755 0.32 -1.3 173,497 - HGI48_RS00755 0.32 -0.7 173,497 - HGI48_RS00755 0.32 -0.6 173,497 - HGI48_RS00755 0.32 -0.7 173,497 - HGI48_RS00755 0.32 +0.1 173,593 - HGI48_RS00755 0.41 -0.2 173,677 + HGI48_RS00755 0.49 +0.6 173,689 + HGI48_RS00755 0.50 -1.8 173,725 + HGI48_RS00755 0.53 -1.3 173,726 - +1.1 173,726 - HGI48_RS00755 0.53 -0.9 173,823 - HGI48_RS00755 0.62 -2.5 173,926 - HGI48_RS00755 0.72 -0.8 173,926 - +0.1 173,955 - HGI48_RS00755 0.74 +0.7 174,193 - -1.7 174,196 - -0.8 174,196 - -2.3 174,196 - -1.7 174,238 - -0.2 174,238 - -1.1 174,249 - +0.4 174,260 - -0.9 174,265 + -0.3 174,266 - +1.1 174,266 - +0.5 174,266 - +0.1
Or see this region's nucleotide sequence