Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00735 and HGI48_RS00740 overlap by 4 nucleotides HGI48_RS00740 and HGI48_RS00745 overlap by 1 nucleotides
HGI48_RS00735: HGI48_RS00735 - glycosyltransferase family 4 protein, at 168,463 to 169,587
_RS00735
HGI48_RS00740: HGI48_RS00740 - glycosyltransferase family 9 protein, at 169,584 to 170,690
_RS00740
HGI48_RS00745: HGI48_RS00745 - O-antigen ligase family protein, at 170,690 to 171,898
_RS00745
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1
2 at 168.738 kb on + strand, within HGI48_RS00735 at 168.738 kb on + strand, within HGI48_RS00735 at 168.738 kb on + strand at 168.862 kb on + strand at 168.862 kb on + strand, within HGI48_RS00735 at 168.863 kb on - strand at 169.215 kb on + strand at 169.551 kb on + strand at 169.807 kb on - strand, within HGI48_RS00740 at 169.875 kb on + strand, within HGI48_RS00740 at 169.876 kb on + strand, within HGI48_RS00740 at 169.877 kb on - strand, within HGI48_RS00740 at 169.880 kb on + strand at 169.893 kb on + strand, within HGI48_RS00740 at 169.928 kb on + strand, within HGI48_RS00740 at 169.928 kb on + strand, within HGI48_RS00740 at 169.929 kb on - strand, within HGI48_RS00740 at 169.929 kb on - strand, within HGI48_RS00740 at 169.988 kb on + strand, within HGI48_RS00740 at 169.988 kb on + strand, within HGI48_RS00740 at 169.989 kb on - strand, within HGI48_RS00740 at 169.989 kb on - strand, within HGI48_RS00740 at 170.149 kb on + strand, within HGI48_RS00740 at 170.235 kb on + strand, within HGI48_RS00740 at 170.237 kb on + strand, within HGI48_RS00740 at 170.237 kb on + strand, within HGI48_RS00740 at 170.237 kb on + strand, within HGI48_RS00740 at 170.273 kb on + strand, within HGI48_RS00740 at 170.417 kb on + strand, within HGI48_RS00740 at 170.436 kb on + strand, within HGI48_RS00740 at 170.486 kb on + strand, within HGI48_RS00740 at 170.487 kb on - strand at 170.495 kb on + strand at 170.627 kb on + strand at 170.627 kb on + strand at 170.627 kb on + strand at 170.628 kb on - strand at 170.674 kb on + strand at 170.674 kb on + strand at 170.674 kb on + strand at 170.674 kb on + strand at 170.674 kb on + strand at 170.675 kb on - strand at 170.675 kb on - strand at 170.675 kb on - strand at 170.675 kb on - strand at 170.728 kb on + strand at 170.741 kb on + strand at 170.741 kb on + strand at 170.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 168,738 + HGI48_RS00735 0.24 +0.6 168,738 + HGI48_RS00735 0.24 -1.5 168,738 + +0.1 168,862 + +1.1 168,862 + HGI48_RS00735 0.35 +0.6 168,863 - +0.1 169,215 + +0.1 169,551 + +0.1 169,807 - HGI48_RS00740 0.20 -0.4 169,875 + HGI48_RS00740 0.26 -1.4 169,876 + HGI48_RS00740 0.26 -1.5 169,877 - HGI48_RS00740 0.26 -1.8 169,880 + +0.1 169,893 + HGI48_RS00740 0.28 -2.6 169,928 + HGI48_RS00740 0.31 +0.1 169,928 + HGI48_RS00740 0.31 -0.9 169,929 - HGI48_RS00740 0.31 +1.3 169,929 - HGI48_RS00740 0.31 -0.1 169,988 + HGI48_RS00740 0.36 -1.3 169,988 + HGI48_RS00740 0.36 +0.1 169,989 - HGI48_RS00740 0.37 -0.9 169,989 - HGI48_RS00740 0.37 -0.9 170,149 + HGI48_RS00740 0.51 -1.4 170,235 + HGI48_RS00740 0.59 -1.8 170,237 + HGI48_RS00740 0.59 -0.2 170,237 + HGI48_RS00740 0.59 -1.1 170,237 + HGI48_RS00740 0.59 -0.9 170,273 + HGI48_RS00740 0.62 -1.1 170,417 + HGI48_RS00740 0.75 -0.9 170,436 + HGI48_RS00740 0.77 -2.1 170,486 + HGI48_RS00740 0.81 +1.6 170,487 - -0.5 170,495 + +1.6 170,627 + -0.5 170,627 + -0.8 170,627 + +2.6 170,628 - -0.8 170,674 + -1.9 170,674 + +0.6 170,674 + +0.3 170,674 + -0.8 170,674 + +0.4 170,675 - +0.5 170,675 - +0.4 170,675 - +0.1 170,675 - +2.2 170,728 + -0.8 170,741 + -1.3 170,741 + +1.1 170,741 + -0.2
Or see this region's nucleotide sequence