Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00585

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
138,464	+		HGI48_RS00580	0.45	-0.4
138,465	-		HGI48_RS00580	0.45	-1.1
138,550	+		HGI48_RS00580	0.50	-0.5
138,550	+		HGI48_RS00580	0.50	-1.3
138,550	+		HGI48_RS00580	0.50	-0.2
138,551	-		HGI48_RS00580	0.51	+0.7
138,675	+		HGI48_RS00580	0.59	+0.1
138,675	+		HGI48_RS00580	0.59	-0.8
138,676	-		HGI48_RS00580	0.59	+0.1
138,676	-		HGI48_RS00580	0.59	+0.7
138,684	+				+0.1
138,684	+		HGI48_RS00580	0.59	-1.3
138,684	+		HGI48_RS00580	0.59	-1.8
138,684	+		HGI48_RS00580	0.59	-0.3
138,684	+		HGI48_RS00580	0.59	+0.1
138,684	+		HGI48_RS00580	0.59	+1.6
138,684	+		HGI48_RS00580	0.59	-0.1
138,685	-		HGI48_RS00580	0.59	-0.8
138,685	-		HGI48_RS00580	0.59	-0.1
138,685	-		HGI48_RS00580	0.59	+1.4
138,685	-		HGI48_RS00580	0.59	+0.4
138,706	+		HGI48_RS00580	0.61	-1.4
138,706	+		HGI48_RS00580	0.61	-0.9
138,707	-				+0.5
138,707	-		HGI48_RS00580	0.61	+1.2
138,707	-		HGI48_RS00580	0.61	+0.4
138,707	-		HGI48_RS00580	0.61	-1.9
138,707	-		HGI48_RS00580	0.61	-0.9
138,753	+		HGI48_RS00580	0.64	+1.8
138,753	+				+0.1
138,834	+		HGI48_RS00580	0.69	+0.0
138,834	+		HGI48_RS00580	0.69	-0.0
139,246	-				-0.3
139,313	-				+1.3
139,313	-				+1.1
139,313	-				-2.3
139,370	+				+0.4
139,375	+				-0.9
139,375	+				-1.8
139,375	+				+0.9
139,375	+				-1.3
139,376	-				-0.3
139,376	-				-0.5
139,376	-				+1.1
139,376	-				-1.5
139,376	-				-0.4
139,405	+				+1.1
139,406	-				-3.5
139,406	-				-0.8
139,406	-				-0.7
139,427	-				-0.3
139,442	+				+1.6
139,443	-				+1.3
139,443	-				+1.3
139,444	+				-0.8
139,444	+				-1.5
139,444	+				+0.5
139,444	+				-0.9
139,444	+				-1.4
139,444	+				-0.6
139,444	+				-0.9
139,444	+				+0.4
139,445	-				-1.8
139,445	-				+1.1
139,445	-				+0.1
139,445	-				+0.6
139,445	-				-1.1
139,445	-				-0.8
139,445	-				+0.9
139,445	-				+0.1
139,445	-				-0.3
139,490	+				-0.9
139,490	+				+0.1
139,490	+				-1.3
139,490	+				-1.5
139,490	+				-0.2
139,490	+				-0.6
139,491	-				-0.1
139,491	-				+0.5
139,515	+				-0.8
139,515	+				+0.2
139,515	+				-0.5
139,516	-				-0.4
139,516	-				-1.9
139,516	-				+0.1
139,595	+		HGI48_RS00585	0.11	-0.9
139,595	+		HGI48_RS00585	0.11	-0.9
139,595	+		HGI48_RS00585	0.11	-0.4
139,595	+		HGI48_RS00585	0.11	-0.3
139,595	+		HGI48_RS00585	0.11	-1.4
139,595	+		HGI48_RS00585	0.11	-0.5
139,595	+		HGI48_RS00585	0.11	+0.8
139,595	+		HGI48_RS00585	0.11	+0.1
139,596	-		HGI48_RS00585	0.11	-2.4
139,596	-		HGI48_RS00585	0.11	+0.2
139,596	-		HGI48_RS00585	0.11	-1.4
139,662	+		HGI48_RS00585	0.16	+1.1
139,724	-				+0.5
139,770	+		HGI48_RS00585	0.24	+0.6
139,770	+		HGI48_RS00585	0.24	+0.1
139,770	+				-0.5
139,771	-		HGI48_RS00585	0.25	-1.5
139,771	-		HGI48_RS00585	0.25	+0.6
139,771	-		HGI48_RS00585	0.25	+0.1
139,771	-		HGI48_RS00585	0.25	-0.4
139,771	-		HGI48_RS00585	0.25	-0.3
139,771	-		HGI48_RS00585	0.25	+0.4
139,824	-		HGI48_RS00585	0.29	+1.1
139,908	+		HGI48_RS00585	0.35	+0.1
139,966	+		HGI48_RS00585	0.39	+1.3
139,966	+		HGI48_RS00585	0.39	-0.9
139,967	-		HGI48_RS00585	0.39	-0.8
139,970	+		HGI48_RS00585	0.40	+0.1
139,970	+		HGI48_RS00585	0.40	-0.0
139,970	+		HGI48_RS00585	0.40	-2.4
139,970	+		HGI48_RS00585	0.40	+0.5
139,971	-				-0.5
139,971	-		HGI48_RS00585	0.40	+1.4
139,971	-		HGI48_RS00585	0.40	-1.5
139,971	-				+0.5
139,971	-		HGI48_RS00585	0.40	+1.1
140,002	+		HGI48_RS00585	0.42	+0.1
140,002	+		HGI48_RS00585	0.42	+0.1
140,003	-		HGI48_RS00585	0.42	-0.6
140,003	-		HGI48_RS00585	0.42	-1.3
140,003	-		HGI48_RS00585	0.42	-0.4
140,003	-		HGI48_RS00585	0.42	-0.5
140,035	+		HGI48_RS00585	0.44	-0.8
140,112	+		HGI48_RS00585	0.50	-1.5
140,112	+		HGI48_RS00585	0.50	+0.5
140,112	+		HGI48_RS00585	0.50	-1.9
140,112	+		HGI48_RS00585	0.50	+0.4
140,112	+				+0.1
140,112	+		HGI48_RS00585	0.50	+0.2
140,113	-		HGI48_RS00585	0.50	+2.9
140,133	-		HGI48_RS00585	0.52	-0.7
140,133	-		HGI48_RS00585	0.52	-0.3
140,144	+		HGI48_RS00585	0.53	+0.1
140,145	-		HGI48_RS00585	0.53	-0.9
140,184	+		HGI48_RS00585	0.56	+0.7
140,184	+		HGI48_RS00585	0.56	-0.8
140,185	-		HGI48_RS00585	0.56	+0.8
140,185	-		HGI48_RS00585	0.56	+0.2
140,185	-		HGI48_RS00585	0.56	+1.9
140,291	+		HGI48_RS00585	0.64	-1.8
140,294	+		HGI48_RS00585	0.64	-1.3
140,295	-		HGI48_RS00585	0.64	+1.1
140,372	+		HGI48_RS00585	0.70	-1.9
140,373	-		HGI48_RS00585	0.70	-0.6
140,373	-		HGI48_RS00585	0.70	+0.8
140,373	-		HGI48_RS00585	0.70	+0.4
140,377	+		HGI48_RS00585	0.70	-1.9
140,377	+		HGI48_RS00585	0.70	-0.3
140,377	+		HGI48_RS00585	0.70	+0.7
140,377	+		HGI48_RS00585	0.70	-1.5
140,377	+		HGI48_RS00585	0.70	+0.4
140,378	-		HGI48_RS00585	0.70	+0.1
140,410	-		HGI48_RS00585	0.73	-0.9
140,420	+		HGI48_RS00585	0.73	-0.4
140,504	+		HGI48_RS00585	0.80	-0.8
140,504	+		HGI48_RS00585	0.80	-0.8
140,504	+		HGI48_RS00585	0.80	+0.3
140,559	+		HGI48_RS00585	0.84	-0.9
140,560	-		HGI48_RS00585	0.84	+0.5
140,560	-		HGI48_RS00585	0.84	-1.5
140,600	+		HGI48_RS00585	0.87	+0.1
140,600	+		HGI48_RS00585	0.87	-0.3
140,677	+				-0.9
140,678	-				+0.1
140,678	-				+0.8
140,678	-				+0.1
140,681	+				+1.5
140,681	+				-1.0
140,681	+				-3.0
140,681	+				-2.1
140,681	+				+0.3
140,681	+				+1.4
140,682	-				-0.3
140,682	-				+0.0
140,713	+				-0.6
140,719	-				+0.1
140,741	+				+2.1
140,741	+				-0.7
140,741	+				+0.1
140,742	-				-0.5
140,742	-				-0.3
140,742	-				+0.6
140,747	+				+0.1
140,748	-				-0.5
140,748	-				+0.3
140,748	-				+0.2
140,748	-				-1.5
140,748	-				+1.5
140,763	-				+0.6
140,801	-				+1.2
140,807	-				+0.6
140,807	-				+1.1
140,810	+				+2.4
140,811	-				+0.2
140,811	-				+0.3
140,834	+				-0.4
140,834	+				-0.4
140,835	-				-0.5
140,849	+				-0.1
140,849	+				+0.9
140,849	+				-0.3
140,849	+				+0.2
140,849	+				+2.9
140,850	-				-0.1
140,850	-				-0.3
140,850	-				+1.1
140,850	-				+0.7
140,850	-				+0.4
140,854	+				+0.1
140,854	+				-0.7
140,855	-				+0.1
140,855	-				+1.3
140,859	-				+1.1
140,859	-				+1.1
140,930	+				-0.9
140,930	+				-1.3
140,931	-				-0.3
140,931	-				+1.8
140,941	+				-0.2
140,941	+				-0.5
140,941	+				+0.4
140,941	+				+1.9
140,952	+				+1.5
140,952	+				-1.5
140,960	+				+0.9
140,960	+				+3.1
140,960	+				-0.3
140,960	+				+0.7
140,960	+				-0.3
140,960	+				-0.6
140,960	+				+1.4
140,960	+				-0.2
140,960	+				+1.4
140,961	-				-0.1
140,961	-				-1.5
140,961	-				+2.6
140,961	-				-2.4
140,961	-				-1.3
140,961	-				+0.1
140,961	-				+0.5
140,961	-				+0.1
140,986	+				+0.1
140,986	+				-1.9
140,986	+				+0.1
141,029	-				-0.5
141,033	+				-0.3
141,034	-				+1.3
141,099	-				+2.2
141,099	-				-0.2
141,099	-				-0.5
141,113	-				-0.4
141,113	-				-0.1
141,182	+				-0.7
141,358	+		HGI48_RS00590	0.13	-1.3
141,358	+		HGI48_RS00590	0.13	-0.6
141,358	+		HGI48_RS00590	0.13	-1.9
141,358	+				-0.5
141,359	-		HGI48_RS00590	0.14	+1.1
141,364	+		HGI48_RS00590	0.15	+0.4
141,364	+		HGI48_RS00590	0.15	-1.1
141,384	+		HGI48_RS00590	0.19	+0.1
141,384	+				-0.5
141,385	-		HGI48_RS00590	0.20	-1.4
141,392	+				-0.5
141,393	-		HGI48_RS00590	0.21	-1.1
141,393	-		HGI48_RS00590	0.21	-1.5
141,393	-		HGI48_RS00590	0.21	-0.9
141,393	-				+2.4
141,450	+		HGI48_RS00590	0.34	-2.3
141,451	-		HGI48_RS00590	0.35	+1.1
141,451	-		HGI48_RS00590	0.35	+1.2
141,451	-				+1.1
141,451	-		HGI48_RS00590	0.35	-0.9
141,459	+		HGI48_RS00590	0.37	-0.2
141,459	+		HGI48_RS00590	0.37	+0.6
141,459	+		HGI48_RS00590	0.37	-0.9
141,460	-		HGI48_RS00590	0.37	-0.5
141,478	+		HGI48_RS00590	0.41	-0.2
141,482	+		HGI48_RS00590	0.42	-0.3
141,482	+				-0.5
141,482	+		HGI48_RS00590	0.42	-0.1
141,482	+				+1.6
141,483	-		HGI48_RS00590	0.42	+0.7
141,483	-		HGI48_RS00590	0.42	-1.3
141,483	-		HGI48_RS00590	0.42	-0.5
141,483	-		HGI48_RS00590	0.42	-1.6
141,483	-		HGI48_RS00590	0.42	+0.6
141,483	-				-0.5
141,483	-		HGI48_RS00590	0.42	+0.1
141,483	-		HGI48_RS00590	0.42	+0.3
141,483	-		HGI48_RS00590	0.42	+1.9
141,496	+		HGI48_RS00590	0.45	-1.8
141,535	+		HGI48_RS00590	0.54	+0.2
141,535	+		HGI48_RS00590	0.54	-1.5
141,536	-		HGI48_RS00590	0.54	-1.3
141,536	-		HGI48_RS00590	0.54	+0.5
141,558	+		HGI48_RS00590	0.59	+0.2
141,558	+		HGI48_RS00590	0.59	-0.0
141,558	+		HGI48_RS00590	0.59	+0.6
141,559	-		HGI48_RS00590	0.59	-0.8
141,559	-		HGI48_RS00590	0.59	-0.9
141,562	+		HGI48_RS00590	0.60	+0.9
141,562	+		HGI48_RS00590	0.60	+0.6
141,563	-		HGI48_RS00590	0.60	-1.5
141,563	-		HGI48_RS00590	0.60	+1.3
141,575	-				+0.1
141,603	+		HGI48_RS00590	0.69	+1.1
141,604	-		HGI48_RS00590	0.70	-1.2
141,604	-		HGI48_RS00590	0.70	+0.8
141,682	+		HGI48_RS00590	0.87	-1.7
141,682	+		HGI48_RS00590	0.87	+0.4
141,682	+		HGI48_RS00590	0.87	-2.4
141,682	+		HGI48_RS00590	0.87	-0.9
141,683	-		HGI48_RS00590	0.88	+0.1
141,683	-		HGI48_RS00590	0.88	-0.9
141,704	+				+1.8
141,704	+				-0.7
141,704	+				+2.4
141,704	+				+0.6
141,704	+				+0.1
141,704	+				-0.1
141,704	+				+0.4
141,705	-				-1.5
141,705	-				+1.4
141,734	+				+0.1
141,734	+				-0.1
141,734	+				-2.3
141,734	+				+0.1
141,735	-				-0.9
141,735	-				-2.1