Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00170 and HGI48_RS00175 are separated by 101 nucleotides HGI48_RS00175 and HGI48_RS00180 are separated by 656 nucleotides
HGI48_RS00170: HGI48_RS00170 - aldose 1-epimerase family protein, at 43,899 to 45,107
_RS00170
HGI48_RS00175: HGI48_RS00175 - glyoxylate/hydroxypyruvate reductase GhrB, at 45,209 to 46,171
_RS00175
HGI48_RS00180: HGI48_RS00180 - RNA-directed DNA polymerase, at 46,828 to 47,766
_RS00180
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 44.212 kb on + strand, within HGI48_RS00170 at 44.241 kb on - strand, within HGI48_RS00170 at 44.241 kb on - strand, within HGI48_RS00170 at 44.349 kb on + strand, within HGI48_RS00170 at 44.349 kb on + strand, within HGI48_RS00170 at 44.350 kb on - strand at 44.375 kb on + strand, within HGI48_RS00170 at 44.421 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170 at 44.575 kb on + strand, within HGI48_RS00170 at 44.575 kb on + strand, within HGI48_RS00170 at 44.575 kb on + strand, within HGI48_RS00170 at 44.576 kb on - strand, within HGI48_RS00170 at 44.580 kb on + strand, within HGI48_RS00170 at 44.581 kb on - strand, within HGI48_RS00170 at 44.697 kb on + strand, within HGI48_RS00170 at 44.697 kb on + strand, within HGI48_RS00170 at 44.697 kb on + strand, within HGI48_RS00170 at 44.697 kb on + strand, within HGI48_RS00170 at 44.697 kb on + strand, within HGI48_RS00170 at 44.698 kb on - strand, within HGI48_RS00170 at 44.698 kb on - strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.699 kb on + strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.700 kb on - strand, within HGI48_RS00170 at 44.735 kb on + strand, within HGI48_RS00170 at 44.736 kb on - strand, within HGI48_RS00170 at 44.736 kb on - strand, within HGI48_RS00170 at 44.883 kb on + strand, within HGI48_RS00170 at 44.883 kb on + strand, within HGI48_RS00170 at 44.884 kb on - strand, within HGI48_RS00170 at 44.884 kb on - strand, within HGI48_RS00170 at 44.913 kb on + strand, within HGI48_RS00170 at 44.913 kb on + strand, within HGI48_RS00170 at 44.914 kb on - strand, within HGI48_RS00170 at 44.978 kb on + strand, within HGI48_RS00170 at 44.979 kb on - strand, within HGI48_RS00170 at 44.997 kb on + strand at 44.997 kb on + strand at 44.997 kb on + strand at 44.998 kb on - strand at 45.120 kb on + strand at 45.120 kb on + strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.140 kb on + strand at 45.140 kb on + strand at 45.140 kb on + strand at 45.140 kb on + strand at 45.140 kb on + strand at 45.141 kb on - strand at 45.146 kb on + strand at 45.146 kb on + strand at 45.147 kb on - strand at 45.147 kb on - strand at 45.179 kb on - strand at 45.179 kb on - strand at 45.179 kb on - strand at 45.186 kb on - strand at 45.186 kb on - strand at 45.211 kb on - strand at 45.424 kb on + strand, within HGI48_RS00175 at 45.425 kb on - strand, within HGI48_RS00175 at 45.664 kb on - strand, within HGI48_RS00175 at 45.677 kb on - strand, within HGI48_RS00175 at 45.737 kb on - strand, within HGI48_RS00175 at 45.742 kb on + strand at 45.742 kb on + strand, within HGI48_RS00175 at 45.743 kb on - strand, within HGI48_RS00175 at 45.743 kb on - strand, within HGI48_RS00175 at 45.749 kb on - strand, within HGI48_RS00175 at 45.755 kb on + strand, within HGI48_RS00175 at 45.755 kb on + strand, within HGI48_RS00175 at 45.755 kb on + strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.756 kb on - strand, within HGI48_RS00175 at 45.764 kb on - strand, within HGI48_RS00175 at 45.890 kb on + strand, within HGI48_RS00175 at 45.890 kb on + strand, within HGI48_RS00175 at 45.890 kb on + strand, within HGI48_RS00175 at 45.890 kb on + strand at 45.902 kb on - strand, within HGI48_RS00175 at 46.005 kb on + strand at 46.005 kb on + strand, within HGI48_RS00175 at 46.005 kb on + strand, within HGI48_RS00175 at 46.021 kb on + strand, within HGI48_RS00175 at 46.022 kb on - strand, within HGI48_RS00175 at 46.235 kb on + strand at 46.236 kb on - strand at 46.279 kb on + strand at 46.279 kb on + strand at 46.322 kb on - strand at 46.332 kb on - strand at 46.332 kb on - strand at 46.408 kb on + strand at 46.408 kb on + strand at 46.409 kb on - strand at 46.409 kb on - strand at 46.409 kb on - strand at 46.409 kb on - strand at 46.409 kb on - strand at 46.416 kb on + strand at 46.416 kb on + strand at 46.416 kb on + strand at 46.416 kb on + strand at 46.417 kb on - strand at 46.417 kb on - strand at 46.449 kb on - strand at 46.543 kb on - strand at 46.553 kb on - strand at 46.554 kb on + strand at 46.555 kb on - strand at 46.655 kb on + strand at 46.656 kb on - strand at 46.658 kb on + strand at 46.658 kb on + strand at 46.658 kb on + strand at 46.658 kb on + strand at 46.658 kb on + strand at 46.659 kb on - strand at 46.659 kb on - strand at 46.659 kb on - strand at 46.659 kb on - strand at 46.659 kb on - strand at 46.693 kb on - strand at 46.701 kb on + strand at 46.702 kb on - strand at 46.705 kb on + strand at 46.771 kb on + strand at 46.775 kb on - strand at 46.803 kb on + strand at 46.815 kb on + strand at 46.816 kb on - strand at 46.817 kb on + strand at 46.817 kb on + strand at 46.859 kb on + strand at 46.859 kb on + strand at 46.859 kb on + strand at 46.880 kb on + strand at 46.880 kb on + strand at 46.881 kb on - strand at 46.881 kb on - strand at 46.888 kb on + strand at 46.888 kb on + strand at 46.912 kb on + strand at 46.912 kb on + strand at 46.913 kb on - strand at 46.913 kb on - strand at 46.971 kb on + strand at 46.971 kb on + strand at 46.980 kb on + strand, within HGI48_RS00180 at 46.980 kb on + strand, within HGI48_RS00180 at 47.003 kb on + strand, within HGI48_RS00180 at 47.003 kb on + strand, within HGI48_RS00180 at 47.003 kb on + strand, within HGI48_RS00180 at 47.037 kb on + strand, within HGI48_RS00180 at 47.038 kb on - strand, within HGI48_RS00180 at 47.044 kb on + strand, within HGI48_RS00180 at 47.055 kb on + strand, within HGI48_RS00180 at 47.070 kb on + strand, within HGI48_RS00180 at 47.098 kb on + strand, within HGI48_RS00180 at 47.118 kb on - strand, within HGI48_RS00180 at 47.118 kb on - strand, within HGI48_RS00180 at 47.118 kb on - strand, within HGI48_RS00180 at 47.118 kb on - strand, within HGI48_RS00180 at 47.145 kb on + strand at 47.146 kb on - strand, within HGI48_RS00180 at 47.146 kb on - strand, within HGI48_RS00180
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 44,212 + HGI48_RS00170 0.26 -0.3 44,241 - HGI48_RS00170 0.28 -1.3 44,241 - HGI48_RS00170 0.28 -1.5 44,349 + HGI48_RS00170 0.37 -0.7 44,349 + HGI48_RS00170 0.37 -0.4 44,350 - -0.5 44,375 + HGI48_RS00170 0.39 +1.2 44,421 + HGI48_RS00170 0.43 -2.9 44,499 + HGI48_RS00170 0.50 -1.9 44,499 + HGI48_RS00170 0.50 -0.2 44,499 + HGI48_RS00170 0.50 +1.6 44,499 + HGI48_RS00170 0.50 -0.7 44,499 + HGI48_RS00170 0.50 -0.2 44,500 - HGI48_RS00170 0.50 -1.2 44,500 - HGI48_RS00170 0.50 +0.1 44,500 - HGI48_RS00170 0.50 +0.1 44,500 - HGI48_RS00170 0.50 -1.9 44,503 + HGI48_RS00170 0.50 -2.4 44,503 + HGI48_RS00170 0.50 +0.1 44,503 + HGI48_RS00170 0.50 +0.6 44,575 + HGI48_RS00170 0.56 -0.8 44,575 + HGI48_RS00170 0.56 +1.9 44,575 + HGI48_RS00170 0.56 +1.0 44,576 - HGI48_RS00170 0.56 -0.4 44,580 + HGI48_RS00170 0.56 +0.8 44,581 - HGI48_RS00170 0.56 -0.2 44,697 + HGI48_RS00170 0.66 -0.8 44,697 + HGI48_RS00170 0.66 +0.5 44,697 + HGI48_RS00170 0.66 +0.2 44,697 + HGI48_RS00170 0.66 +0.7 44,697 + HGI48_RS00170 0.66 -1.6 44,698 - HGI48_RS00170 0.66 +3.1 44,698 - HGI48_RS00170 0.66 +1.6 44,699 + HGI48_RS00170 0.66 +0.5 44,699 + HGI48_RS00170 0.66 -0.4 44,699 + HGI48_RS00170 0.66 -0.9 44,699 + HGI48_RS00170 0.66 -0.3 44,699 + HGI48_RS00170 0.66 -0.3 44,699 + HGI48_RS00170 0.66 -0.5 44,699 + HGI48_RS00170 0.66 +1.4 44,700 - HGI48_RS00170 0.66 +1.1 44,700 - HGI48_RS00170 0.66 +1.2 44,700 - HGI48_RS00170 0.66 +1.9 44,700 - HGI48_RS00170 0.66 -0.1 44,700 - HGI48_RS00170 0.66 +0.1 44,700 - HGI48_RS00170 0.66 -0.4 44,700 - HGI48_RS00170 0.66 -1.8 44,700 - HGI48_RS00170 0.66 -0.9 44,735 + HGI48_RS00170 0.69 -0.3 44,736 - HGI48_RS00170 0.69 +0.3 44,736 - HGI48_RS00170 0.69 +0.1 44,883 + HGI48_RS00170 0.81 -0.9 44,883 + HGI48_RS00170 0.81 +1.7 44,884 - HGI48_RS00170 0.81 +0.1 44,884 - HGI48_RS00170 0.81 +0.8 44,913 + HGI48_RS00170 0.84 +0.3 44,913 + HGI48_RS00170 0.84 -0.4 44,914 - HGI48_RS00170 0.84 -1.5 44,978 + HGI48_RS00170 0.89 -0.3 44,979 - HGI48_RS00170 0.89 +0.7 44,997 + +0.6 44,997 + -0.5 44,997 + +0.7 44,998 - -2.3 45,120 + +0.8 45,120 + +0.5 45,121 - -0.3 45,121 - +1.1 45,121 - +0.1 45,121 - -1.8 45,140 + +0.1 45,140 + +0.1 45,140 + -1.4 45,140 + +1.6 45,140 + -1.3 45,141 - -0.3 45,146 + -0.3 45,146 + -0.4 45,147 - -0.5 45,147 - +1.1 45,179 - -1.5 45,179 - +0.5 45,179 - -0.5 45,186 - -2.4 45,186 - -0.3 45,211 - +0.6 45,424 + HGI48_RS00175 0.22 -0.2 45,425 - HGI48_RS00175 0.22 -0.3 45,664 - HGI48_RS00175 0.47 +0.2 45,677 - HGI48_RS00175 0.49 -3.0 45,737 - HGI48_RS00175 0.55 +0.7 45,742 + +0.5 45,742 + HGI48_RS00175 0.55 -0.1 45,743 - HGI48_RS00175 0.55 +1.8 45,743 - HGI48_RS00175 0.55 -0.9 45,749 - HGI48_RS00175 0.56 -0.2 45,755 + HGI48_RS00175 0.57 +0.1 45,755 + HGI48_RS00175 0.57 +0.1 45,755 + HGI48_RS00175 0.57 -0.2 45,756 - HGI48_RS00175 0.57 -0.8 45,756 - HGI48_RS00175 0.57 -0.5 45,756 - HGI48_RS00175 0.57 -0.7 45,756 - HGI48_RS00175 0.57 +0.6 45,756 - HGI48_RS00175 0.57 +1.3 45,756 - HGI48_RS00175 0.57 +0.7 45,756 - HGI48_RS00175 0.57 -0.5 45,764 - HGI48_RS00175 0.58 -0.3 45,890 + HGI48_RS00175 0.71 +0.8 45,890 + HGI48_RS00175 0.71 -0.1 45,890 + HGI48_RS00175 0.71 +0.1 45,890 + +3.1 45,902 - HGI48_RS00175 0.72 -0.8 46,005 + +1.8 46,005 + HGI48_RS00175 0.83 -0.4 46,005 + HGI48_RS00175 0.83 +0.3 46,021 + HGI48_RS00175 0.84 -1.8 46,022 - HGI48_RS00175 0.84 +0.4 46,235 + +0.2 46,236 - -0.4 46,279 + -1.8 46,279 + +0.5 46,322 - -0.7 46,332 - +1.1 46,332 - -0.5 46,408 + +1.1 46,408 + -1.3 46,409 - -0.5 46,409 - +1.2 46,409 - +1.3 46,409 - -1.8 46,409 - -0.9 46,416 + +0.8 46,416 + -2.1 46,416 + +0.7 46,416 + -1.3 46,417 - -0.5 46,417 - -0.0 46,449 - +0.4 46,543 - +1.1 46,553 - -1.5 46,554 + -0.9 46,555 - -0.2 46,655 + +1.1 46,656 - -0.2 46,658 + -0.2 46,658 + +0.6 46,658 + -0.5 46,658 + +0.5 46,658 + -1.8 46,659 - -0.6 46,659 - -0.5 46,659 - +0.2 46,659 - +1.2 46,659 - +0.5 46,693 - +0.3 46,701 + +0.6 46,702 - +0.1 46,705 + +0.2 46,771 + +0.2 46,775 - +0.4 46,803 + -0.2 46,815 + -1.3 46,816 - -1.3 46,817 + -0.1 46,817 + +0.1 46,859 + +0.2 46,859 + -1.5 46,859 + -0.4 46,880 + +0.5 46,880 + -2.1 46,881 - +0.1 46,881 - -1.5 46,888 + +1.2 46,888 + -0.6 46,912 + -1.1 46,912 + -0.5 46,913 - -0.5 46,913 - +0.5 46,971 + +0.5 46,971 + +0.5 46,980 + HGI48_RS00180 0.16 -1.5 46,980 + HGI48_RS00180 0.16 +0.1 47,003 + HGI48_RS00180 0.19 +0.2 47,003 + HGI48_RS00180 0.19 +0.1 47,003 + HGI48_RS00180 0.19 +2.9 47,037 + HGI48_RS00180 0.22 +0.2 47,038 - HGI48_RS00180 0.22 -0.8 47,044 + HGI48_RS00180 0.23 -0.1 47,055 + HGI48_RS00180 0.24 +0.6 47,070 + HGI48_RS00180 0.26 +0.5 47,098 + HGI48_RS00180 0.29 -0.5 47,118 - HGI48_RS00180 0.31 +0.3 47,118 - HGI48_RS00180 0.31 -0.5 47,118 - HGI48_RS00180 0.31 +1.1 47,118 - HGI48_RS00180 0.31 -0.2 47,145 + -0.5 47,146 - HGI48_RS00180 0.34 +0.1 47,146 - HGI48_RS00180 0.34 -0.8
Or see this region's nucleotide sequence